Clone RE24541 Report

Search the DGRC for RE24541

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:245
Well:41
Vector:pFlc-1
Associated Gene/TranscriptCG12567-RF
Protein status:RE24541.pep: gold
Sequenced Size:1899

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12567 2001-12-14 Blastp of sequenced clone
CG12567 2002-01-01 Sim4 clustering to Release 2
CG12567 2003-01-01 Sim4 clustering to Release 3
CG12567 2008-04-29 Release 5.5 accounting
CG12567 2008-08-15 Release 5.9 accounting
CR41437 2008-08-15 Release 5.9 accounting
CG12567 2008-12-18 5.12 accounting
CR41437 2008-12-18 5.12 accounting

Clone Sequence Records

RE24541.complete Sequence

1899 bp (1899 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071204

> RE24541.complete
AACAGGCAAACGAACTTTCAAATATGTTACTTATTAATATTGTAGTGCCA
ACAGAGCATCTCTTTGTCCTCAGTATTCATAAGTGTGACATTCGTCCATT
TGTGGTAGAGGGGAAACAAGTTGGTCTTATTAAGTCAGATGTTTTAAAAC
ATCTCGAAAAGTATCCTGAAGTATTTTGCATTCGTGCTTGTGAGCAAACT
AAACAGGGTTTGGTAGAGCTAAATCCTGCTTTTCGTGACTATAACGAGCG
CACTGAGCAACTGGAAAAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTT
TTCCTGCATTACAGGGATGGAGAGATGAGTATTTCGAGGTAAAAGCAGAC
TGCAGAGCTCTACTTAAAATGGAACGAGCTGCTACTCCGCTCTTTGGAGT
GCGCAAGTACGGCGTCGATATAAACGGTTACGTAAGACATCCGACGCTTG
GACTATGCATTTGGCTGCAGCAGCGGTCAAACACAAAAGAGACCTGGCCT
GGAAAGTGGGACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTAT
TAAGGAAACAGCCATTAAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTG
ACCTAGTCAAGAATTTGGTGTCCGCAGGATGTGTCTCATTTTACTTTGAA
AGCCGACAAGGACTTTTTCCCAATACCGAATATGTTTTCGACTTAGAGCT
ACCACTTGACTTTGTGCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTG
AGCTGCTAACAGCCAAGGACTGTGTGGAGCGCGTTTTTACTTCAGATTTC
AAGACAACTTCAGCGCCTGTGGTGATTGATTTTCTTATCCGACACGGTCA
CATAACAGCAGATGATGTTGTCGACTTCACACAAATCGTTGAGCTCTTGC
ACGTGCCCTTACAGTCCATATATACGTACAAGACACGCTTTGAGCAATCC
ATAAAACAACCTCAATTCTTGCCAGGTGATTCCAAAAACTGTAACTGTGC
AATATTTCAGAAAATATCAATGGAGAATGGGCACAAGAAGGCGAATTAAT
TTGAAATGCTGTATAGTCATAAAAAAAATAATGAGGCATGGCTACAAAGA
AATATTAATGCAAGCTCAAAACAAAATAAAAGTGATTGTAATTGAAGTGA
ACTTTCTGAAGCCCAGGCTAGTCTCCAAGAGGTAAACATTAATGGACGTA
TTGCCCTTCCCTAGAAGTCTGATTATAAAATGAAGTTTCGTGTCAGCAAA
GTTCATAAAAAATACGATTTTGTTTTAAGCTTTTTTTATTTCACAATATC
GGTCAGCATTAAGAAGTAAAATTATTACAAATTATCAAATATCACTTCAT
TGTGTAGTCTACTAACAGCTGTGAAGAGTTTGTAATGCACTTAGAATTTT
AAAAGTAGTGTTGAGCTGGTTTGTATTTGAATAATGAACAAAATAATGAC
AAATTCTAAAATTCTGCTAAAAAATATTAGGAGGTTATTATGATGTTAAG
GTAGATTAAGCATAATGTTTTCTTGTTTAAGGATATGCGTTGGTTTGGGC
TTTATTTGTTGTTTTCGTTGGTATAAACAATCAAATTTTAACTATATTTT
TAAATATTAATTGTTATTATATAACCTCCCTTATACTTGTCAAACATGGA
GAAAAATCCCAGAACTCGTTTTTTTCAAAATACTAAATTTACTTAAACTG
CAATATTATAGCAGTGTGAATTAACTATAGTGTATGTATATTAATATATT
ATATTACATCTTTTAATATATGTAGTAACCAAAGTGCTCAAAATTAAGAG
ATACATTATAGGTAGGATAATGTTACTTATGTACATTTTTGTAACCTAAT
ACAATATTTAATAAAGTAAATATATAAAAAGCCGAAAAAAAAAAAAAAA

RE24541.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-RF 1885 CG12567-RF 1..1885 1..1884 9370 99.8 Plus
CG12567-RA 2214 CG12567-RA 402..2214 73..1884 9025 99.9 Plus
CG12567-RE 2266 CG12567-RE 584..2266 203..1884 8375 99.9 Plus
CG12567-RE 2266 CG12567-RE 402..536 73..207 675 100 Plus
CG12567-RE 2266 CG12567-RE 1..53 23..75 265 100 Plus
CG12567-RA 2214 CG12567-RA 1..53 23..75 265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2LHet 368865 chr2LHet 19634..20652 1884..867 5045 99.9 Minus
chr2LHet 368865 chr2LHet 20724..21388 867..203 3325 100 Minus
chrU 10048995 chrU 3352020..3352395 1884..1509 1675 97.4 Minus
chr2LHet 368865 chr2LHet 7917..8293 1884..1509 1665 97.1 Minus
chr2LHet 368865 chr2LHet 1702..2077 1884..1509 1660 97.1 Minus
chr2LHet 368865 chr2LHet 4916..5291 1884..1509 1660 97.1 Minus
chr2LHet 368865 chr2LHet 16268..16626 1867..1509 1590 97.2 Minus
chrU 10048995 chrU 3348952..3349187 1741..1509 1085 98.3 Minus
chr2LHet 368865 chr2LHet 179478..179715 867..630 1070 96.6 Minus
chr2LHet 368865 chr2LHet 271098..271335 630..867 1070 96.6 Plus
chr2L 23010047 chr2L 22966700..22966943 1629..1868 845 92.6 Plus
chr2LHet 368865 chr2LHet 176013..176179 1085..920 695 95.8 Minus
chr2LHet 368865 chr2LHet 175838..176014 1286..1113 685 93.8 Minus
chr2LHet 368865 chr2LHet 21436..21570 207..73 675 100 Minus
chrU 10048995 chrU 3348058..3348140 1833..1751 370 96.4 Minus
chr2LHet 368865 chr2LHet 32919..32993 75..1 360 98.7 Minus
chrU 10048995 chrU 3343916..3343960 1884..1840 210 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CR41437-RA 342 CR41437-RA 167..241 75..1 360 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23161116..23162140 1890..867 5075 99.9 Minus
2L 23513712 2L 23162212..23162876 867..203 3325 100 Minus
2L 23513712 2L 23140222..23140603 1890..1509 1705 97.4 Minus
2L 23513712 2L 23149437..23149819 1890..1509 1695 97.2 Minus
2L 23513712 2L 23143222..23143603 1890..1509 1690 97.1 Minus
2L 23513712 2L 23146436..23146817 1890..1509 1690 97.1 Minus
2L 23513712 2L 23157794..23158152 1867..1509 1590 97.2 Minus
2L 23513712 2L 23137160..23137395 1741..1509 1085 98.3 Minus
2L 23513712 2L 23323955..23324192 867..630 1070 96.6 Minus
2L 23513712 2L 23415916..23416153 630..867 1070 96.6 Plus
2L 23513712 2L 23075465..23075708 1629..1868 845 92.6 Plus
2L 23513712 2L 23320471..23320637 1085..920 695 95.8 Minus
2L 23513712 2L 23320296..23320472 1286..1113 685 93.8 Minus
2L 23513712 2L 23162924..23163058 207..73 675 100 Minus
2L 23513712 2L 23136266..23136348 1833..1751 370 96.4 Minus
2L 23513712 2L 23174410..23174484 75..1 360 98.7 Minus
2L 23513712 2L 23132119..23132169 1890..1840 240 98 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23161116..23162140 1890..867 5085 99.9 Minus
2L 23513712 2L 23162212..23162876 867..203 3325 100 Minus
2L 23513712 2L 23140222..23140603 1890..1509 1725 97.4 Minus
2L 23513712 2L 23149437..23149819 1890..1509 1715 97.1 Minus
2L 23513712 2L 23146436..23146817 1890..1509 1710 97.1 Minus
2L 23513712 2L 23143222..23143603 1890..1509 1710 97.1 Minus
2L 23513712 2L 23157794..23158152 1867..1509 1610 97.2 Minus
2L 23513712 2L 23137160..23137395 1741..1509 1095 98.3 Minus
2L 23513712 2L 23415916..23416153 630..867 1070 96.6 Plus
2L 23513712 2L 23323955..23324192 867..630 1070 96.6 Minus
2L 23513712 2L 23075465..23075708 1629..1868 875 92.6 Plus
2L 23513712 2L 23320471..23320637 1085..920 705 95.8 Minus
2L 23513712 2L 23320296..23320472 1286..1113 695 93.7 Minus
2L 23513712 2L 23162924..23163058 207..73 675 100 Minus
2L 23513712 2L 23136266..23136348 1833..1751 370 96.3 Minus
2L 23513712 2L 23174410..23174484 75..1 360 98.6 Minus
2L 23513712 2L 23132119..23132169 1890..1840 240 98 Minus
2L 23513712 2L 23154454..23154488 1890..1856 160 97.1 Minus
2L 23513712 2L 23152651..23152693 1890..1848 155 90.6 Minus
Blast to na_te.dros performed 2019-03-15 20:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 328..364 1450..1487 124 84.2 Plus
gypsy9 5349 gypsy9 GYPSY9 5349bp 361..527 1067..1230 116 53.9 Plus

RE24541.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:17 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
chr2LHet 19634..20651 868..1884 99 <- Minus
chr2LHet 20724..21384 207..867 100 <- Minus
chr2LHet 21437..21570 73..206 100 <- Minus
chr2LHet 32922..32993 1..72 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:08:06 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RB 1..1047 3..1049 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:42 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 1..1026 24..1049 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:44 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 1..1026 24..1049 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:56 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RB 1..1047 3..1049 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:00 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 1..1026 24..1049 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:43:59 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CR41437-RA 167..241 1..75 98   Minus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:08:05 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RB 1..1885 1..1884 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:42 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 1..1885 1..1884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:44 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 1..1885 1..1884 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:57 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RB 1..1885 1..1884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:00 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
CG12567-RF 1..1885 1..1884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:17 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 868..1884 99 <- Minus
2L 23162212..23162872 207..867 100 <- Minus
2L 23162925..23163058 73..206 100 <- Minus
2L 23174413..23174484 1..72 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:17 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 868..1884 99 <- Minus
2L 23162212..23162872 207..867 100 <- Minus
2L 23162925..23163058 73..206 100 <- Minus
2L 23174413..23174484 1..72 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:17 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 868..1884 99 <- Minus
2L 23162212..23162872 207..867 100 <- Minus
2L 23162925..23163058 73..206 100 <- Minus
2L 23174413..23174484 1..72 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:44 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 19633..20650 868..1884 99 <- Minus
2LHet 20723..21383 207..867 100 <- Minus
2LHet 21436..21569 73..206 100 <- Minus
2LHet 32924..32995 1..72 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:16 Download gff for RE24541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23161122..23162139 868..1884 99 <- Minus
2L 23162212..23162872 207..867 100 <- Minus
2L 23162925..23163058 73..206 100 <- Minus
2L 23174413..23174484 1..72 98   Minus

RE24541.hyp Sequence

Translation from 2 to 1048

> RE24541.hyp
HANELSNMLLINIVVPTEHLFVLSIHKCDIRPFVVEGKQVGLIKSDVLKH
LEKYPEVFCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLF
PALQGWRDEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLG
LCIWLQQRSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSD
LVKNLVSAGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFE
LLTAKDCVERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLH
VPLQSIYTYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*

RE24541.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-PF 341 CG12567-PF 1..341 8..348 1795 100 Plus
CG12567-PG 349 CG12567-PG 7..349 4..348 1717 94.8 Plus
CG12567-PA 349 CG12567-PA 7..349 4..348 1717 94.8 Plus
CG12567-PD 335 CG12567-PD 10..335 23..348 1714 99.4 Plus
CG12567-PC 70 CG12567-PC 7..69 4..68 240 72.3 Plus

RE24541.pep Sequence

Translation from 23 to 1048

> RE24541.pep
MLLINIVVPTEHLFVLSIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEV
FCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWR
DEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQ
RSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVS
AGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDC
VERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIY
TYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*

RE24541.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15848-PA 326 GF15848-PA 3..323 17..340 1468 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21418-PA 2299 GG21418-PA 2013..2299 55..341 1474 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13287-PA 337 GH13287-PA 10..330 18..337 1411 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12567-PF 341 CG12567-PF 1..341 1..341 1795 100 Plus
CG12567-PG 349 CG12567-PG 20..349 12..341 1716 98.2 Plus
CG12567-PA 349 CG12567-PA 20..349 12..341 1716 98.2 Plus
CG12567-PD 335 CG12567-PD 10..335 16..341 1714 99.4 Plus
CG12567-PC 70 CG12567-PC 20..69 12..61 239 88 Plus
CG12567-PE 75 CG12567-PE 20..69 12..61 239 88 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17480-PA 352 GI17480-PA 11..350 3..341 1385 76.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21174-PA 577 GL21174-PA 282..576 53..340 1313 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30010-PA 356 GA30010-PA 20..355 12..340 1494 85.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11126-PA 226 GM11126-PA 1..226 116..341 1200 98.2 Plus
Dsec\GM18784-PA 210 GM18784-PA 1..210 132..341 1112 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15002-PA 352 GJ15002-PA 11..348 3..339 1442 79.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23708-PA 352 GK23708-PA 21..351 12..340 1437 83.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14900-PA 335 GE14900-PA 10..335 16..341 1679 95.1 Plus