BDGP Sequence Production Resources |
Search the DGRC for RE24541
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 245 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12567-RF |
Protein status: | RE24541.pep: gold |
Sequenced Size: | 1899 |
Gene | Date | Evidence |
---|---|---|
CG12567 | 2001-12-14 | Blastp of sequenced clone |
CG12567 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12567 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12567 | 2008-04-29 | Release 5.5 accounting |
CG12567 | 2008-08-15 | Release 5.9 accounting |
CR41437 | 2008-08-15 | Release 5.9 accounting |
CG12567 | 2008-12-18 | 5.12 accounting |
CR41437 | 2008-12-18 | 5.12 accounting |
1899 bp (1899 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071204
> RE24541.complete AACAGGCAAACGAACTTTCAAATATGTTACTTATTAATATTGTAGTGCCA ACAGAGCATCTCTTTGTCCTCAGTATTCATAAGTGTGACATTCGTCCATT TGTGGTAGAGGGGAAACAAGTTGGTCTTATTAAGTCAGATGTTTTAAAAC ATCTCGAAAAGTATCCTGAAGTATTTTGCATTCGTGCTTGTGAGCAAACT AAACAGGGTTTGGTAGAGCTAAATCCTGCTTTTCGTGACTATAACGAGCG CACTGAGCAACTGGAAAAGGTTTTGCGTAACTTGCGCTCCGAGGGACTTT TTCCTGCATTACAGGGATGGAGAGATGAGTATTTCGAGGTAAAAGCAGAC TGCAGAGCTCTACTTAAAATGGAACGAGCTGCTACTCCGCTCTTTGGAGT GCGCAAGTACGGCGTCGATATAAACGGTTACGTAAGACATCCGACGCTTG GACTATGCATTTGGCTGCAGCAGCGGTCAAACACAAAAGAGACCTGGCCT GGAAAGTGGGACAATATGGTAGGCGGTGGACTTTCAGTCGGCTTTGGTAT TAAGGAAACAGCCATTAAGGAGGCTGCAGAGGAGGCATCAATTCCTTCTG ACCTAGTCAAGAATTTGGTGTCCGCAGGATGTGTCTCATTTTACTTTGAA AGCCGACAAGGACTTTTTCCCAATACCGAATATGTTTTCGACTTAGAGCT ACCACTTGACTTTGTGCCTCAAAACGCTGACGGGGAGGTCCAGGCCTTTG AGCTGCTAACAGCCAAGGACTGTGTGGAGCGCGTTTTTACTTCAGATTTC AAGACAACTTCAGCGCCTGTGGTGATTGATTTTCTTATCCGACACGGTCA CATAACAGCAGATGATGTTGTCGACTTCACACAAATCGTTGAGCTCTTGC ACGTGCCCTTACAGTCCATATATACGTACAAGACACGCTTTGAGCAATCC ATAAAACAACCTCAATTCTTGCCAGGTGATTCCAAAAACTGTAACTGTGC AATATTTCAGAAAATATCAATGGAGAATGGGCACAAGAAGGCGAATTAAT TTGAAATGCTGTATAGTCATAAAAAAAATAATGAGGCATGGCTACAAAGA AATATTAATGCAAGCTCAAAACAAAATAAAAGTGATTGTAATTGAAGTGA ACTTTCTGAAGCCCAGGCTAGTCTCCAAGAGGTAAACATTAATGGACGTA TTGCCCTTCCCTAGAAGTCTGATTATAAAATGAAGTTTCGTGTCAGCAAA GTTCATAAAAAATACGATTTTGTTTTAAGCTTTTTTTATTTCACAATATC GGTCAGCATTAAGAAGTAAAATTATTACAAATTATCAAATATCACTTCAT TGTGTAGTCTACTAACAGCTGTGAAGAGTTTGTAATGCACTTAGAATTTT AAAAGTAGTGTTGAGCTGGTTTGTATTTGAATAATGAACAAAATAATGAC AAATTCTAAAATTCTGCTAAAAAATATTAGGAGGTTATTATGATGTTAAG GTAGATTAAGCATAATGTTTTCTTGTTTAAGGATATGCGTTGGTTTGGGC TTTATTTGTTGTTTTCGTTGGTATAAACAATCAAATTTTAACTATATTTT TAAATATTAATTGTTATTATATAACCTCCCTTATACTTGTCAAACATGGA GAAAAATCCCAGAACTCGTTTTTTTCAAAATACTAAATTTACTTAAACTG CAATATTATAGCAGTGTGAATTAACTATAGTGTATGTATATTAATATATT ATATTACATCTTTTAATATATGTAGTAACCAAAGTGCTCAAAATTAAGAG ATACATTATAGGTAGGATAATGTTACTTATGTACATTTTTGTAACCTAAT ACAATATTTAATAAAGTAAATATATAAAAAGCCGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-RF | 1885 | CG12567-RF | 1..1885 | 1..1884 | 9370 | 99.8 | Plus |
CG12567-RA | 2214 | CG12567-RA | 402..2214 | 73..1884 | 9025 | 99.9 | Plus |
CG12567-RE | 2266 | CG12567-RE | 584..2266 | 203..1884 | 8375 | 99.9 | Plus |
CG12567-RE | 2266 | CG12567-RE | 402..536 | 73..207 | 675 | 100 | Plus |
CG12567-RE | 2266 | CG12567-RE | 1..53 | 23..75 | 265 | 100 | Plus |
CG12567-RA | 2214 | CG12567-RA | 1..53 | 23..75 | 265 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2LHet | 368865 | chr2LHet | 19634..20652 | 1884..867 | 5045 | 99.9 | Minus |
chr2LHet | 368865 | chr2LHet | 20724..21388 | 867..203 | 3325 | 100 | Minus |
chrU | 10048995 | chrU | 3352020..3352395 | 1884..1509 | 1675 | 97.4 | Minus |
chr2LHet | 368865 | chr2LHet | 7917..8293 | 1884..1509 | 1665 | 97.1 | Minus |
chr2LHet | 368865 | chr2LHet | 1702..2077 | 1884..1509 | 1660 | 97.1 | Minus |
chr2LHet | 368865 | chr2LHet | 4916..5291 | 1884..1509 | 1660 | 97.1 | Minus |
chr2LHet | 368865 | chr2LHet | 16268..16626 | 1867..1509 | 1590 | 97.2 | Minus |
chrU | 10048995 | chrU | 3348952..3349187 | 1741..1509 | 1085 | 98.3 | Minus |
chr2LHet | 368865 | chr2LHet | 179478..179715 | 867..630 | 1070 | 96.6 | Minus |
chr2LHet | 368865 | chr2LHet | 271098..271335 | 630..867 | 1070 | 96.6 | Plus |
chr2L | 23010047 | chr2L | 22966700..22966943 | 1629..1868 | 845 | 92.6 | Plus |
chr2LHet | 368865 | chr2LHet | 176013..176179 | 1085..920 | 695 | 95.8 | Minus |
chr2LHet | 368865 | chr2LHet | 175838..176014 | 1286..1113 | 685 | 93.8 | Minus |
chr2LHet | 368865 | chr2LHet | 21436..21570 | 207..73 | 675 | 100 | Minus |
chrU | 10048995 | chrU | 3348058..3348140 | 1833..1751 | 370 | 96.4 | Minus |
chr2LHet | 368865 | chr2LHet | 32919..32993 | 75..1 | 360 | 98.7 | Minus |
chrU | 10048995 | chrU | 3343916..3343960 | 1884..1840 | 210 | 97.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CR41437-RA | 342 | CR41437-RA | 167..241 | 75..1 | 360 | 98.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23161116..23162140 | 1890..867 | 5075 | 99.9 | Minus |
2L | 23513712 | 2L | 23162212..23162876 | 867..203 | 3325 | 100 | Minus |
2L | 23513712 | 2L | 23140222..23140603 | 1890..1509 | 1705 | 97.4 | Minus |
2L | 23513712 | 2L | 23149437..23149819 | 1890..1509 | 1695 | 97.2 | Minus |
2L | 23513712 | 2L | 23143222..23143603 | 1890..1509 | 1690 | 97.1 | Minus |
2L | 23513712 | 2L | 23146436..23146817 | 1890..1509 | 1690 | 97.1 | Minus |
2L | 23513712 | 2L | 23157794..23158152 | 1867..1509 | 1590 | 97.2 | Minus |
2L | 23513712 | 2L | 23137160..23137395 | 1741..1509 | 1085 | 98.3 | Minus |
2L | 23513712 | 2L | 23323955..23324192 | 867..630 | 1070 | 96.6 | Minus |
2L | 23513712 | 2L | 23415916..23416153 | 630..867 | 1070 | 96.6 | Plus |
2L | 23513712 | 2L | 23075465..23075708 | 1629..1868 | 845 | 92.6 | Plus |
2L | 23513712 | 2L | 23320471..23320637 | 1085..920 | 695 | 95.8 | Minus |
2L | 23513712 | 2L | 23320296..23320472 | 1286..1113 | 685 | 93.8 | Minus |
2L | 23513712 | 2L | 23162924..23163058 | 207..73 | 675 | 100 | Minus |
2L | 23513712 | 2L | 23136266..23136348 | 1833..1751 | 370 | 96.4 | Minus |
2L | 23513712 | 2L | 23174410..23174484 | 75..1 | 360 | 98.7 | Minus |
2L | 23513712 | 2L | 23132119..23132169 | 1890..1840 | 240 | 98 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23161116..23162140 | 1890..867 | 5085 | 99.9 | Minus |
2L | 23513712 | 2L | 23162212..23162876 | 867..203 | 3325 | 100 | Minus |
2L | 23513712 | 2L | 23140222..23140603 | 1890..1509 | 1725 | 97.4 | Minus |
2L | 23513712 | 2L | 23149437..23149819 | 1890..1509 | 1715 | 97.1 | Minus |
2L | 23513712 | 2L | 23146436..23146817 | 1890..1509 | 1710 | 97.1 | Minus |
2L | 23513712 | 2L | 23143222..23143603 | 1890..1509 | 1710 | 97.1 | Minus |
2L | 23513712 | 2L | 23157794..23158152 | 1867..1509 | 1610 | 97.2 | Minus |
2L | 23513712 | 2L | 23137160..23137395 | 1741..1509 | 1095 | 98.3 | Minus |
2L | 23513712 | 2L | 23415916..23416153 | 630..867 | 1070 | 96.6 | Plus |
2L | 23513712 | 2L | 23323955..23324192 | 867..630 | 1070 | 96.6 | Minus |
2L | 23513712 | 2L | 23075465..23075708 | 1629..1868 | 875 | 92.6 | Plus |
2L | 23513712 | 2L | 23320471..23320637 | 1085..920 | 705 | 95.8 | Minus |
2L | 23513712 | 2L | 23320296..23320472 | 1286..1113 | 695 | 93.7 | Minus |
2L | 23513712 | 2L | 23162924..23163058 | 207..73 | 675 | 100 | Minus |
2L | 23513712 | 2L | 23136266..23136348 | 1833..1751 | 370 | 96.3 | Minus |
2L | 23513712 | 2L | 23174410..23174484 | 75..1 | 360 | 98.6 | Minus |
2L | 23513712 | 2L | 23132119..23132169 | 1890..1840 | 240 | 98 | Minus |
2L | 23513712 | 2L | 23154454..23154488 | 1890..1856 | 160 | 97.1 | Minus |
2L | 23513712 | 2L | 23152651..23152693 | 1890..1848 | 155 | 90.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2LHet | 19634..20651 | 868..1884 | 99 | <- | Minus |
chr2LHet | 20724..21384 | 207..867 | 100 | <- | Minus |
chr2LHet | 21437..21570 | 73..206 | 100 | <- | Minus |
chr2LHet | 32922..32993 | 1..72 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RB | 1..1047 | 3..1049 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RF | 1..1026 | 24..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RF | 1..1026 | 24..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RB | 1..1047 | 3..1049 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RF | 1..1026 | 24..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CR41437-RA | 167..241 | 1..75 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RB | 1..1885 | 1..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RF | 1..1885 | 1..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RF | 1..1885 | 1..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RB | 1..1885 | 1..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12567-RF | 1..1885 | 1..1884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 868..1884 | 99 | <- | Minus |
2L | 23162212..23162872 | 207..867 | 100 | <- | Minus |
2L | 23162925..23163058 | 73..206 | 100 | <- | Minus |
2L | 23174413..23174484 | 1..72 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 868..1884 | 99 | <- | Minus |
2L | 23162212..23162872 | 207..867 | 100 | <- | Minus |
2L | 23162925..23163058 | 73..206 | 100 | <- | Minus |
2L | 23174413..23174484 | 1..72 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 868..1884 | 99 | <- | Minus |
2L | 23162212..23162872 | 207..867 | 100 | <- | Minus |
2L | 23162925..23163058 | 73..206 | 100 | <- | Minus |
2L | 23174413..23174484 | 1..72 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2LHet | 19633..20650 | 868..1884 | 99 | <- | Minus |
2LHet | 20723..21383 | 207..867 | 100 | <- | Minus |
2LHet | 21436..21569 | 73..206 | 100 | <- | Minus |
2LHet | 32924..32995 | 1..72 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23161122..23162139 | 868..1884 | 99 | <- | Minus |
2L | 23162212..23162872 | 207..867 | 100 | <- | Minus |
2L | 23162925..23163058 | 73..206 | 100 | <- | Minus |
2L | 23174413..23174484 | 1..72 | 98 | Minus |
Translation from 2 to 1048
> RE24541.hyp HANELSNMLLINIVVPTEHLFVLSIHKCDIRPFVVEGKQVGLIKSDVLKH LEKYPEVFCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLF PALQGWRDEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLG LCIWLQQRSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSD LVKNLVSAGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFE LLTAKDCVERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLH VPLQSIYTYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-PF | 341 | CG12567-PF | 1..341 | 8..348 | 1795 | 100 | Plus |
CG12567-PG | 349 | CG12567-PG | 7..349 | 4..348 | 1717 | 94.8 | Plus |
CG12567-PA | 349 | CG12567-PA | 7..349 | 4..348 | 1717 | 94.8 | Plus |
CG12567-PD | 335 | CG12567-PD | 10..335 | 23..348 | 1714 | 99.4 | Plus |
CG12567-PC | 70 | CG12567-PC | 7..69 | 4..68 | 240 | 72.3 | Plus |
Translation from 23 to 1048
> RE24541.pep MLLINIVVPTEHLFVLSIHKCDIRPFVVEGKQVGLIKSDVLKHLEKYPEV FCIRACEQTKQGLVELNPAFRDYNERTEQLEKVLRNLRSEGLFPALQGWR DEYFEVKADCRALLKMERAATPLFGVRKYGVDINGYVRHPTLGLCIWLQQ RSNTKETWPGKWDNMVGGGLSVGFGIKETAIKEAAEEASIPSDLVKNLVS AGCVSFYFESRQGLFPNTEYVFDLELPLDFVPQNADGEVQAFELLTAKDC VERVFTSDFKTTSAPVVIDFLIRHGHITADDVVDFTQIVELLHVPLQSIY TYKTRFEQSIKQPQFLPGDSKNCNCAIFQKISMENGHKKAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15848-PA | 326 | GF15848-PA | 3..323 | 17..340 | 1468 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21418-PA | 2299 | GG21418-PA | 2013..2299 | 55..341 | 1474 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13287-PA | 337 | GH13287-PA | 10..330 | 18..337 | 1411 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12567-PF | 341 | CG12567-PF | 1..341 | 1..341 | 1795 | 100 | Plus |
CG12567-PG | 349 | CG12567-PG | 20..349 | 12..341 | 1716 | 98.2 | Plus |
CG12567-PA | 349 | CG12567-PA | 20..349 | 12..341 | 1716 | 98.2 | Plus |
CG12567-PD | 335 | CG12567-PD | 10..335 | 16..341 | 1714 | 99.4 | Plus |
CG12567-PC | 70 | CG12567-PC | 20..69 | 12..61 | 239 | 88 | Plus |
CG12567-PE | 75 | CG12567-PE | 20..69 | 12..61 | 239 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17480-PA | 352 | GI17480-PA | 11..350 | 3..341 | 1385 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21174-PA | 577 | GL21174-PA | 282..576 | 53..340 | 1313 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30010-PA | 356 | GA30010-PA | 20..355 | 12..340 | 1494 | 85.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11126-PA | 226 | GM11126-PA | 1..226 | 116..341 | 1200 | 98.2 | Plus |
Dsec\GM18784-PA | 210 | GM18784-PA | 1..210 | 132..341 | 1112 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15002-PA | 352 | GJ15002-PA | 11..348 | 3..339 | 1442 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23708-PA | 352 | GK23708-PA | 21..351 | 12..340 | 1437 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14900-PA | 335 | GE14900-PA | 10..335 | 16..341 | 1679 | 95.1 | Plus |