Clone RE24638 Report

Search the DGRC for RE24638

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:246
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG11857-RA
Protein status:RE24638.pep: gold
Preliminary Size:1155
Sequenced Size:1816

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11857 2002-01-01 Sim4 clustering to Release 2
CG11857 2002-03-28 Blastp of sequenced clone
CG11857 2003-01-01 Sim4 clustering to Release 3
CG11857 2008-04-29 Release 5.5 accounting
CG11857 2008-08-15 Release 5.9 accounting
CG11857 2008-12-18 5.12 accounting

Clone Sequence Records

RE24638.complete Sequence

1816 bp (1816 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094863

> RE24638.complete
GGCCGATAGTTTGACAGCCCTGCCACTGAGAGAGCATAATGACGTGGTGA
ACTCTGTGTGAAAAAAGAACAATAAATTGCCGACAAATCTCTAGTGTAAT
TAAATTAGTTACCGCATAGAAACGCACTAAACTGTGGCCAGAACTTTACG
AATCCCGAATACTGTCTATATAGCAATCTCAGGAAACTGACAGTTGAAAC
AGCCCTACAACAAGGAGGAAGAAGAAGAAGGCGACGACGGGCGGTGCAGA
ATATGAATTAGAGAATAATTAGCGATTGAAGCGCGTCTAGTTTGCCAGTT
GGCCCATTTCGTGTTTTGTTAGCCCCTTTCCGGCAGCCCCTGCCCCCGTC
CCGGAAAATTTTGCAATTCCCGAATCGATACACGTGTGCAGCGAGAACAA
CGACAGCGTCAAAGTCAACAATAAAAGTCGAGGGCCGGAGATTAATGAGA
GACTACCGACGACGACCATGATGAACGAGGACAGCAGTGCTGCCGGCGGC
GGCGGGGTTAAGAAGTTCTTTCAGCGCCTCTCACAGACCTACCAATCCGC
CTTGGACCGTAGCACACCGCACACACGAATGCGCTGGGTGTTCGCCGGCT
TTCTGCTCCTGCTCTTTGTGCTGCGCATCTTCATCTATCAGGGCTGGTAC
ATCGTGTGCTATGCGCTTGGCATTTACCACTTGAACCTGTTTATCGCTTT
TTTAACGCCCAAGATCGACCCGGAGTTCGATCCGTATTCGCAGGATGACG
AGGACGAGGGACCCAATCTGCCAACTCGCAGCAACGAAGAGTTCCGGCCA
TTCATTCGCCGCCTGCCGGAGTTCAAGTTCTGGCTGTCGGTGGCGAAGAG
CACGCTCATCGGTCTGATTTGTACATTCTTCGATTTCTTCAACGTGCCGG
TATTCTGGCCCATCCTGGTCATGTACTTTATCACGCTCTTCTGCATCACG
ATGAAGCGCCAGATCAAGCATATGATCAAGTACAAGTACTTGCCGTTTAC
CCGCAATAAACCGCGCTACCAGCGGGTGAATGATCTGGCGGGTTCCGGAC
CCGGTTCCGTGGCGGGCAACTCAAAGTGACAATTAGCCGCACAGACGTCG
GACACGCGGGCGACGGCAGCGGGATCGGGTGATCCTTCAAATGCCTCTTC
TGCAGCTGCAGCGCCACCATCACCAACCAGCGACAGCGCAGCGACCAAGG
ATGTGGGGTCGCCAACAGCATCGTCCATCAAACCACCGCAGATCATTGCC
ATTGAGGACTACTAGAGAAAGCTACCGAAAGCAGCCCGGAATGGGAACCA
GCAGCATAACATCAACCAGAAACAAGCTTATAATATGATTTTCCTTTTCG
GTTTGTGTAGCATTTTTCGTTTCACTGTTGAGTTGTCGTACGGCGTCTTG
TGCAAAATACCTTGTTTATTGTTTAATCTAACTGCTTGTTTAAATTTATA
TTTATTTACAATGCTTTCTATCTATTGTAAATCCCAAACGATACCGAAAT
ACTGCAGATCAGCTCTAATTTAGTTTTTCATCCTAATCCTAACAATAATT
TAATAACTCTTCTATCCAAAAAGTAGACTTACTGTATTTGAATCCAATTA
TTTTTGATTATCGTGCTAAGATGCTATAATAATATGTCTAAATATATATA
CAAACATATATATATATATATTTTGCATTATGATTATACAATTTTTGTTA
GCGTTAACTATACAGAATGTTAAAAAAAGGCGAATTGAAAACTGAAACTA
TAGGAAGTGTACACTGGGTGCGTCTTATGAATAAAGAAAGACAAAAGAAA
ACAAAAAAAAAAAAAA

RE24638.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11857-RA 1959 CG11857-RA 122..1926 2..1806 8995 99.8 Plus
CG11857-RB 1740 CG11857-RB 2..1025 2..1025 5105 99.9 Plus
CG11857.a 1662 CG11857.a 96..947 174..1025 4245 99.8 Plus
CG11857-RB 1740 CG11857-RB 1025..1737 1094..1806 3550 99.8 Plus
CG11857.a 1662 CG11857.a 947..1659 1094..1806 3550 99.8 Plus
CG11857.a 1662 CG11857.a 2..95 2..95 470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21082574..21083842 534..1802 6330 99.9 Plus
chr3R 27901430 chr3R 21081981..21082515 2..536 2675 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25259491..25260763 534..1806 6335 99.8 Plus
3R 32079331 3R 25258898..25259432 2..536 2675 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25000322..25001594 534..1806 6335 99.8 Plus
3R 31820162 3R 24999729..25000263 2..536 2675 100 Plus
Blast to na_te.dros performed 2019-03-15 14:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 6639..6816 1589..1412 124 57.6 Minus

RE24638.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:07:34 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21081980..21082515 1..536 99 -> Plus
chr3R 21082577..21083819 537..1779 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:09 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 1..612 468..1079 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:25 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 1..612 468..1079 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:19:03 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 1..612 468..1079 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:47 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 1..612 468..1079 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:50:55 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 1..612 468..1079 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:20 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 2..1779 2..1779 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:25 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 2..1779 2..1779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:19:03 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 1..1778 2..1779 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:47 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 2..1779 2..1779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:50:55 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
CG11857-RA 1..1778 2..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:34 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25258897..25259432 1..536 99 -> Plus
3R 25259494..25260736 537..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:34 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25258897..25259432 1..536 99 -> Plus
3R 25259494..25260736 537..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:34 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25258897..25259432 1..536 99 -> Plus
3R 25259494..25260736 537..1779 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:19:03 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21084619..21085154 1..536 99 -> Plus
arm_3R 21085216..21086458 537..1779 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:41 Download gff for RE24638.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24999728..25000263 1..536 99 -> Plus
3R 25000325..25001567 537..1779 99   Plus

RE24638.pep Sequence

Translation from 467 to 1078

> RE24638.pep
MMNEDSSAAGGGGVKKFFQRLSQTYQSALDRSTPHTRMRWVFAGFLLLLF
VLRIFIYQGWYIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQDDEDEGPN
LPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPIL
VMYFITLFCITMKRQIKHMIKYKYLPFTRNKPRYQRVNDLAGSGPGSVAG
NSK*

RE24638.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17557-PA 203 GF17557-PA 1..203 1..203 994 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11383-PA 203 GG11383-PA 1..203 1..203 1075 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22588-PA 208 GH22588-PA 1..208 1..203 912 84.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11857-PA 203 CG11857-PA 1..203 1..203 1092 100 Plus
CG11857-PC 265 CG11857-PC 1..203 1..203 1092 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23640-PA 208 GI23640-PA 1..208 1..203 919 86.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21709-PA 207 GL21709-PA 1..207 1..203 957 89 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11240-PA 207 GA11240-PA 1..207 1..203 957 89 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17826-PA 203 GM17826-PA 1..203 1..203 1080 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21194-PA 203 GD21194-PA 1..203 1..203 1080 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24716-PA 206 GJ24716-PA 1..206 1..203 942 87 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12924-PA 207 GK12924-PA 1..207 1..203 929 87.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23580-PA 203 GE23580-PA 1..203 1..203 1076 99 Plus

RE24638.hyp Sequence

Translation from 467 to 1078

> RE24638.hyp
MMNEDSSAAGGGGVKKFFQRLSQTYQSALDRSTPHTRMRWVFAGFLLLLF
VLRIFIYQGWYIVCYALGIYHLNLFIAFLTPKIDPEFDPYSQDDEDEGPN
LPTRSNEEFRPFIRRLPEFKFWLSVAKSTLIGLICTFFDFFNVPVFWPIL
VMYFITLFCITMKRQIKHMIKYKYLPFTRNKPRYQRVNDLAGSGPGSVAG
NSK*

RE24638.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11857-PA 203 CG11857-PA 1..203 1..203 1092 100 Plus