Clone RE24665 Report

Search the DGRC for RE24665

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:246
Well:65
Vector:pFlc-1
Associated Gene/TranscriptBsg25A-RA
Protein status:RE24665.pep: gold
Preliminary Size:1442
Sequenced Size:1366

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12205 2002-01-01 Sim4 clustering to Release 2
CG12205 2002-02-22 Blastp of sequenced clone
CG12205 2003-01-01 Sim4 clustering to Release 3
Bsg25A 2008-04-29 Release 5.5 accounting
Bsg25A 2008-08-15 Release 5.9 accounting
Bsg25A 2008-12-18 5.12 accounting

Clone Sequence Records

RE24665.complete Sequence

1366 bp (1366 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089611

> RE24665.complete
ACCTGTAAAGGTTTTCGCATTGGTGGTATATAAGGTGTTGACTTATTAGC
AGTAATTCAGTTTGCAAGTGGACAACAAGCAGCACAATGATTAACCGCCG
TCAGCGTTTGGAATTCGCCCTGACCCTATTGCCCTATGATCCCGAGACAG
TTCAGTTGTCTGAAACGCAGAAAAAAGTGGAGGCGATCATCGCCCGCCTG
CGAACGGATGACTCCTTTACGGAGGAGGAGAGCGATGACTGCAAGGTGCG
GCGCATTCAAGATGCAAATGAGTTTGCCGATTCCGCCATGCGACACATCG
AAATGTCCGATAGTGGCAAGCTGAGCACTCTGGAAACTCTTACACTGGCT
GCTGAGAAGCTGCTAAGGACACAGCGTTCACCGGATCAGGATTTCGATGA
CATGGTGCAGGATGTGGAGTACTCGCAGCTGATGAGGAACACCATCCAGG
CGGTAAATGAGGCGCGTTTGAAGCTTCTCCAGCAATGGGAGCGCAGTAAG
CGCAAGGCTCTCGATCTCCTCACCATCGAAATTGAAAAGGTCCAGGAAAT
GGATCAGGAGCCAGAGCACAAACAGTCTCATGAGCAGGACCAGGATCAGG
AGCAGAGTTCGGAGCCTTTTAACGCGTTTCGCGATGGAGCCGATGAGCAC
AACACCTCGACGCCGAAAACAAACGACGAAGATCTTGGTTTGGACGATGA
CGATGAGGACTATGTGCCCGGCGGAGAAGAGACAATGGGTAACAAGAGGA
AGCGTATCAAGAAACCGGTGACCTCCACTCCGAATGCGAAACGGCGGTGT
CCTGGTTTCGAATTCGACCTGGACGGCGAATCGCCGATGGTGACGATCGG
TCCCAATGGCACCGAAGTTTCCCGCATTAGCCTAAGTGCCATCAACTGGG
ACATGACCGGACCCTCGATCACGAGGAAGCTGCTCTGCGAGATCTTCGAC
CGGGATACACTGGCCCATCATACGCTATCCGGAAAACCATCGCCGGCATT
TAGGGACTGTGCCCGTCCCAGCAAACAGCAGCTGGATCCGCTCAAGGTGG
CCGATCTGGTCTATCTGATGACTAACAGCCTGGACATGACTCCGCGGGAA
GTGCGCACTGCCATCACCACCAAATGTGCGGATGAAAACAAGATGCTACG
CTCGCGAATGCAGCGCAAATCAAAGTAGGAAACTTTTCCATGGAAACTCC
CTGGGAAAGACCTCCTTTTTCATTTTCTAGGAATGAATTCCCGAAAGTAG
GTCCATTTACCCGTTAAAACCCTAATTCTGATTCTACAGTATACTAAGTC
CCGGCACAGCCGATAACACCAATTGAATAAAGAAACCCACTTTCTTACCC
AAAAAAAAAAAAAAAA

RE24665.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-RA 1448 Bsg25A-RA 4..1355 1..1352 6760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4682178..4683439 1350..89 6310 100 Minus
chr2L 23010047 chr2L 4683497..4683585 89..1 445 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4683050..4684313 1352..89 6320 100 Minus
2L 23513712 2L 4684371..4684459 89..1 445 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4683050..4684313 1352..89 6320 100 Minus
2L 23513712 2L 4684371..4684459 89..1 445 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:13:04 has no hits.

RE24665.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:18 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4682178..4683438 90..1350 100 <- Minus
chr2L 4683497..4683585 1..89 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:11 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1092 87..1178 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:53 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1092 87..1178 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:47 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1092 87..1178 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:06 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1092 87..1178 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:02 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1092 87..1178 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:03:58 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1350 1..1350 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:53 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1350 1..1350 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:47 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 3..1352 1..1350 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:07 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 1..1350 1..1350 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:02 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
Bsg25A-RA 3..1352 1..1350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:18 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4683052..4684312 90..1350 100 <- Minus
2L 4684371..4684459 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:18 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4683052..4684312 90..1350 100 <- Minus
2L 4684371..4684459 1..89 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:18 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4683052..4684312 90..1350 100 <- Minus
2L 4684371..4684459 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:47 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4683052..4684312 90..1350 100 <- Minus
arm_2L 4684371..4684459 1..89 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:15 Download gff for RE24665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4683052..4684312 90..1350 100 <- Minus
2L 4684371..4684459 1..89 100   Minus

RE24665.pep Sequence

Translation from 86 to 1177

> RE24665.pep
MINRRQRLEFALTLLPYDPETVQLSETQKKVEAIIARLRTDDSFTEEESD
DCKVRRIQDANEFADSAMRHIEMSDSGKLSTLETLTLAAEKLLRTQRSPD
QDFDDMVQDVEYSQLMRNTIQAVNEARLKLLQQWERSKRKALDLLTIEIE
KVQEMDQEPEHKQSHEQDQDQEQSSEPFNAFRDGADEHNTSTPKTNDEDL
GLDDDDEDYVPGGEETMGNKRKRIKKPVTSTPNAKRRCPGFEFDLDGESP
MVTIGPNGTEVSRISLSAINWDMTGPSITRKLLCEIFDRDTLAHHTLSGK
PSPAFRDCARPSKQQLDPLKVADLVYLMTNSLDMTPREVRTAITTKCADE
NKMLRSRMQRKSK*

RE24665.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23938-PA 378 GF23938-PA 1..376 1..363 1376 78 Plus
Dana\GF20597-PA 362 GF20597-PA 209..343 221..355 326 50 Plus
Dana\GF20590-PA 380 GF20590-PA 260..361 246..349 208 45.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24360-PA 370 GG24360-PA 1..370 1..363 1661 89 Plus
Dere\GG24506-PA 375 GG24506-PA 253..356 251..355 300 52.4 Plus
Dere\GG24864-PA 380 GG24864-PA 258..359 246..349 225 47.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13742-PA 377 GH13742-PA 1..371 1..360 1197 65.1 Plus
Dgri\GH10578-PA 381 GH10578-PA 257..360 251..355 298 54.3 Plus
Dgri\GH11155-PA 307 GH11155-PA 165..283 230..349 211 38.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-PA 363 CG12205-PA 1..363 1..363 1871 100 Plus
insv-PB 376 CG3227-PB 168..365 158..362 290 38.3 Plus
insv-PA 376 CG3227-PA 168..365 158..362 290 38.3 Plus
Elba2-PA 381 CG9883-PA 261..374 249..363 230 43.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17884-PA 387 GI17884-PA 1..384 1..363 1190 63 Plus
Dmoj\GI23044-PA 390 GI23044-PA 271..374 251..355 306 54.3 Plus
Dmoj\GI17861-PA 394 GI17861-PA 279..374 253..349 204 44.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15989-PA 409 GL15989-PA 46..396 1..353 1250 73.2 Plus
Dper\GL26458-PA 398 GL26458-PA 277..380 251..355 302 54.7 Plus
Dper\GL26565-PA 379 GL26565-PA 258..359 246..349 219 47.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11475-PA 363 GA11475-PA 1..350 2..353 1246 73.1 Plus
Dpse\GA16802-PA 376 GA16802-PA 255..358 251..355 302 54.7 Plus
Dpse\GA22097-PA 379 GA22097-PA 258..359 246..349 218 47.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18079-PA 363 GM18079-PA 1..363 1..363 1861 96.4 Plus
Dsec\GM18215-PA 376 GM18215-PA 254..357 251..355 296 52.4 Plus
Dsec\GM18346-PA 381 GM18346-PA 259..360 246..349 225 47.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22697-PA 363 GD22697-PA 1..363 1..363 1861 96.4 Plus
Dsim\GD22821-PA 376 GD22821-PA 254..357 251..355 296 52.4 Plus
Dsim\GD23161-PA 381 GD23161-PA 259..360 246..349 225 47.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17385-PA 385 GJ17385-PA 1..382 1..363 1200 64.4 Plus
Dvir\GJ23568-PA 389 GJ23568-PA 270..373 251..355 299 53.3 Plus
Dvir\GJ17359-PA 374 GJ17359-PA 251..352 246..349 208 44.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23918-PA 387 GK23918-PA 1..381 1..360 1185 64.2 Plus
Dwil\GK24494-PA 379 GK24494-PA 254..357 251..355 313 55.2 Plus
Dwil\GK24562-PA 370 GK24562-PA 255..358 253..357 222 44.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14697-PA 369 GE14697-PA 1..369 1..363 1691 92.4 Plus
Dyak\GE15077-PA 375 GE15077-PA 253..356 251..355 302 52.4 Plus
Dyak\GE18162-PA 381 GE18162-PA 259..360 246..349 224 47.1 Plus

RE24665.hyp Sequence

Translation from 86 to 1177

> RE24665.hyp
MINRRQRLEFALTLLPYDPETVQLSETQKKVEAIIARLRTDDSFTEEESD
DCKVRRIQDANEFADSAMRHIEMSDSGKLSTLETLTLAAEKLLRTQRSPD
QDFDDMVQDVEYSQLMRNTIQAVNEARLKLLQQWERSKRKALDLLTIEIE
KVQEMDQEPEHKQSHEQDQDQEQSSEPFNAFRDGADEHNTSTPKTNDEDL
GLDDDDEDYVPGGEETMGNKRKRIKKPVTSTPNAKRRCPGFEFDLDGESP
MVTIGPNGTEVSRISLSAINWDMTGPSITRKLLCEIFDRDTLAHHTLSGK
PSPAFRDCARPSKQQLDPLKVADLVYLMTNSLDMTPREVRTAITTKCADE
NKMLRSRMQRKSK*

RE24665.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Bsg25A-PA 363 CG12205-PA 1..363 1..363 1871 100 Plus
insv-PB 376 CG3227-PB 168..365 158..362 290 38.3 Plus
insv-PA 376 CG3227-PA 168..365 158..362 290 38.3 Plus
Elba2-PA 381 CG9883-PA 261..374 249..363 230 43.5 Plus