BDGP Sequence Production Resources |
Search the DGRC for RE24789
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 247 |
Well: | 89 |
Vector: | pFlc-1 |
Associated Gene/Transcript | e(y)1-RA |
Protein status: | RE24789.pep: gold |
Sequenced Size: | 1120 |
Gene | Date | Evidence |
---|---|---|
e(y)1 | 2008-04-29 | Release 5.5 accounting |
e(y)1 | 2008-04-29 | Picked prior to 5.5 |
e(y)1 | 2008-08-15 | Release 5.9 accounting |
e(y)1 | 2008-12-18 | 5.12 accounting |
1120 bp assembled on 2007-11-08
GenBank Submission: BT031154
> RE24789.complete ATATGTACGTGCACAATTTCAATGGAATAAACAATCTTCTTGCAGCAAAG CCGACGTAAACATAATAACTATAGAAGTATGAGCGCAGAGAAGTCCGATA AGGCCAAGATCAGTGCCCAAATCAAGCACGTGCCGAAGGACGCGCAGGTG ATCATGTCCATCCTGAAGGAGCTGAATGTCCAGGAGTACGAGCCGCGCGT GGTCAACCAACTGCTGGAGTTCACCTTCCGCTATGTAACCTGCATTCTGG ACGACGCCAAGGTGTACGCCAACCATGCGCGCAAGAAGACCATCGACTTG GACGACGTGCGTCTGGCCACCGAGGTTACGCTGGACAAGAGCTTCACCGG GCCGTTGGAGCGCCACGTTCTAGCCAAGGTGGCCGACGTGCGCAACAGCA TGCCCCTGCCACCCATTAAGCCGCACTGCGGTCTCCGACTGCCGCCCGAC CGCTACTGTCTCACCGGCGTCAACTACAAACTGCGGGCCACTAATCAGCC CAAGAAAATGACCAAGTCGGCGGTGGAGGGCCGTCCACTGAAGACCGTCG TTAAGCCCGTCTCCAGCGCCAATGGTCCGAAGAGGCCACACTCCGTGGTG GCCAAGCAGCAGGTGGTGACCATTCCCAAGCCCGTCATCAAGTTTACCAC CACTACGACAACGAAAACGGTGGGCAGCTCCGGCGGATCTGGGGGCGGCG GTGGTCAGGAGGTTAAGAGCGAGAGCACCGGCGCCGGCGGAGATCTCAAG ATGGAGGTGGACAGCGATGCGGCGGCCGTGGGCAGCATCGCTGGCGCATC CGGTTCGGGAGCAGGAAGTGCCAGCGGAGGAGGAGGAGGAGGAGGATCAT CTGGCGTTGGAGTGGCCGTCAAGCGGGAACGTGAGGAGGAGGAGTTTGAG TTTGTGACCAACTAGCGAAACGACATCATTTACCTTAAATTAATATTCTT AAACCAGACCAAAGCACTTGCATTTGGTTGAGCGAACTGGGGGTCTAAAT TTCAACTCGAATGTGAAGTCCCAAAAACCTTAGTATAGATTCGCCCGTTA ATCATTATGAAATCTACGTTTTATACACAAATACAACTACCAGATTTTCA TATTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
e(y)1-RA | 1169 | e(y)1-RA | 63..1169 | 1..1107 | 5535 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 1457..1487 | 862..832 | 110 | 83.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 17731526..17731754 | 1..229 | 100 | -> | Plus |
chrX | 17731819..17732693 | 230..1104 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 1..837 | 79..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 1..837 | 79..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 1..837 | 79..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 1..837 | 79..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 1..837 | 79..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 7..1110 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 7..1110 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 21..1124 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 7..1110 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
e(y)1-RA | 21..1124 | 1..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17842181..17842409 | 1..229 | 100 | -> | Plus |
X | 17842474..17843348 | 230..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17842181..17842409 | 1..229 | 100 | -> | Plus |
X | 17842474..17843348 | 230..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17842181..17842409 | 1..229 | 100 | -> | Plus |
X | 17842474..17843348 | 230..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 17736214..17736442 | 1..229 | 100 | -> | Plus |
arm_X | 17736507..17737381 | 230..1104 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17850279..17850507 | 1..229 | 100 | -> | Plus |
X | 17850572..17851446 | 230..1104 | 100 | Plus |
Translation from 78 to 914
> RE24789.hyp MSAEKSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTF RYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK VADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKKMTKSAVE GRPLKTVVKPVSSANGPKRPHSVVAKQQVVTIPKPVIKFTTTTTTKTVGS SGGSGGGGGQEVKSESTGAGGDLKMEVDSDAAAVGSIAGASGSGAGSASG GGGGGGSSGVGVAVKREREEEEFEFVTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
e(y)1-PA | 278 | CG6474-PA | 1..278 | 1..278 | 1413 | 100 | Plus |
Translation from 78 to 914
> RE24789.pep MSAEKSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTF RYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK VADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKKMTKSAVE GRPLKTVVKPVSSANGPKRPHSVVAKQQVVTIPKPVIKFTTTTTTKTVGS SGGSGGGGGQEVKSESTGAGGDLKMEVDSDAAAVGSIAGASGSGAGSASG GGGGGGSSGVGVAVKREREEEEFEFVTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21106-PA | 270 | GF21106-PA | 1..255 | 1..254 | 1083 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19133-PA | 275 | GG19133-PA | 1..233 | 1..233 | 1068 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19399-PA | 245 | GH19399-PA | 1..227 | 1..240 | 998 | 79.2 | Plus |
Dgri\GH24066-PA | 109 | GH24066-PA | 4..84 | 8..86 | 139 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
e(y)1-PA | 278 | CG6474-PA | 1..278 | 1..278 | 1413 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22602-PA | 245 | GI22602-PA | 1..230 | 1..243 | 994 | 79.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14751-PA | 253 | GL14751-PA | 2..238 | 3..250 | 1023 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26884-PA | 253 | GA26884-PA | 2..238 | 3..250 | 1030 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22857-PA | 276 | GM22857-PA | 1..276 | 1..278 | 1380 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17368-PA | 244 | GD17368-PA | 7..202 | 40..234 | 883 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23848-PA | 245 | GJ23848-PA | 1..228 | 1..241 | 1036 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25325-PA | 270 | GK25325-PA | 3..270 | 6..278 | 1011 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17689-PA | 275 | GE17689-PA | 1..233 | 1..233 | 1066 | 93.1 | Plus |