Clone RE24789 Report

Search the DGRC for RE24789

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:247
Well:89
Vector:pFlc-1
Associated Gene/Transcripte(y)1-RA
Protein status:RE24789.pep: gold
Sequenced Size:1120

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
e(y)1 2008-04-29 Release 5.5 accounting
e(y)1 2008-04-29 Picked prior to 5.5
e(y)1 2008-08-15 Release 5.9 accounting
e(y)1 2008-12-18 5.12 accounting

Clone Sequence Records

RE24789.complete Sequence

1120 bp assembled on 2007-11-08

GenBank Submission: BT031154

> RE24789.complete
ATATGTACGTGCACAATTTCAATGGAATAAACAATCTTCTTGCAGCAAAG
CCGACGTAAACATAATAACTATAGAAGTATGAGCGCAGAGAAGTCCGATA
AGGCCAAGATCAGTGCCCAAATCAAGCACGTGCCGAAGGACGCGCAGGTG
ATCATGTCCATCCTGAAGGAGCTGAATGTCCAGGAGTACGAGCCGCGCGT
GGTCAACCAACTGCTGGAGTTCACCTTCCGCTATGTAACCTGCATTCTGG
ACGACGCCAAGGTGTACGCCAACCATGCGCGCAAGAAGACCATCGACTTG
GACGACGTGCGTCTGGCCACCGAGGTTACGCTGGACAAGAGCTTCACCGG
GCCGTTGGAGCGCCACGTTCTAGCCAAGGTGGCCGACGTGCGCAACAGCA
TGCCCCTGCCACCCATTAAGCCGCACTGCGGTCTCCGACTGCCGCCCGAC
CGCTACTGTCTCACCGGCGTCAACTACAAACTGCGGGCCACTAATCAGCC
CAAGAAAATGACCAAGTCGGCGGTGGAGGGCCGTCCACTGAAGACCGTCG
TTAAGCCCGTCTCCAGCGCCAATGGTCCGAAGAGGCCACACTCCGTGGTG
GCCAAGCAGCAGGTGGTGACCATTCCCAAGCCCGTCATCAAGTTTACCAC
CACTACGACAACGAAAACGGTGGGCAGCTCCGGCGGATCTGGGGGCGGCG
GTGGTCAGGAGGTTAAGAGCGAGAGCACCGGCGCCGGCGGAGATCTCAAG
ATGGAGGTGGACAGCGATGCGGCGGCCGTGGGCAGCATCGCTGGCGCATC
CGGTTCGGGAGCAGGAAGTGCCAGCGGAGGAGGAGGAGGAGGAGGATCAT
CTGGCGTTGGAGTGGCCGTCAAGCGGGAACGTGAGGAGGAGGAGTTTGAG
TTTGTGACCAACTAGCGAAACGACATCATTTACCTTAAATTAATATTCTT
AAACCAGACCAAAGCACTTGCATTTGGTTGAGCGAACTGGGGGTCTAAAT
TTCAACTCGAATGTGAAGTCCCAAAAACCTTAGTATAGATTCGCCCGTTA
ATCATTATGAAATCTACGTTTTATACACAAATACAACTACCAGATTTTCA
TATTAAAAAAAAAAAAAAAA

RE24789.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)1-RA 1169 e(y)1-RA 63..1169 1..1107 5535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17731819..17732693 230..1104 4330 99.7 Plus
chrX 22417052 chrX 17731526..17731755 1..230 1150 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17842474..17843351 230..1107 4390 100 Plus
X 23542271 X 17842181..17842410 1..230 1150 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17850572..17851449 230..1107 4390 100 Plus
X 23527363 X 17850279..17850508 1..230 1150 100 Plus
Blast to na_te.dros performed 2019-03-16 13:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 1457..1487 862..832 110 83.9 Minus

RE24789.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:16:34 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17731526..17731754 1..229 100 -> Plus
chrX 17731819..17732693 230..1104 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:16 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 1..837 79..915 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:14 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 1..837 79..915 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:57:13 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 1..837 79..915 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:33 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 1..837 79..915 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:11:31 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 1..837 79..915 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:01:11 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 7..1110 1..1104 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:13 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 7..1110 1..1104 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:57:13 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 21..1124 1..1104 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:33 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 7..1110 1..1104 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:31 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
e(y)1-RA 21..1124 1..1104 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:34 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
X 17842181..17842409 1..229 100 -> Plus
X 17842474..17843348 230..1104 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:34 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
X 17842181..17842409 1..229 100 -> Plus
X 17842474..17843348 230..1104 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:34 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
X 17842181..17842409 1..229 100 -> Plus
X 17842474..17843348 230..1104 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:57:13 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17736214..17736442 1..229 100 -> Plus
arm_X 17736507..17737381 230..1104 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:29 Download gff for RE24789.complete
Subject Subject Range Query Range Percent Splice Strand
X 17850279..17850507 1..229 100 -> Plus
X 17850572..17851446 230..1104 100   Plus

RE24789.hyp Sequence

Translation from 78 to 914

> RE24789.hyp
MSAEKSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTF
RYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK
VADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKKMTKSAVE
GRPLKTVVKPVSSANGPKRPHSVVAKQQVVTIPKPVIKFTTTTTTKTVGS
SGGSGGGGGQEVKSESTGAGGDLKMEVDSDAAAVGSIAGASGSGAGSASG
GGGGGGSSGVGVAVKREREEEEFEFVTN*

RE24789.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)1-PA 278 CG6474-PA 1..278 1..278 1413 100 Plus

RE24789.pep Sequence

Translation from 78 to 914

> RE24789.pep
MSAEKSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTF
RYVTCILDDAKVYANHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK
VADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKKMTKSAVE
GRPLKTVVKPVSSANGPKRPHSVVAKQQVVTIPKPVIKFTTTTTTKTVGS
SGGSGGGGGQEVKSESTGAGGDLKMEVDSDAAAVGSIAGASGSGAGSASG
GGGGGGSSGVGVAVKREREEEEFEFVTN*

RE24789.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21106-PA 270 GF21106-PA 1..255 1..254 1083 82.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19133-PA 275 GG19133-PA 1..233 1..233 1068 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19399-PA 245 GH19399-PA 1..227 1..240 998 79.2 Plus
Dgri\GH24066-PA 109 GH24066-PA 4..84 8..86 139 46.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
e(y)1-PA 278 CG6474-PA 1..278 1..278 1413 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22602-PA 245 GI22602-PA 1..230 1..243 994 79.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14751-PA 253 GL14751-PA 2..238 3..250 1023 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26884-PA 253 GA26884-PA 2..238 3..250 1030 79 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22857-PA 276 GM22857-PA 1..276 1..278 1380 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17368-PA 244 GD17368-PA 7..202 40..234 883 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23848-PA 245 GJ23848-PA 1..228 1..241 1036 81.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25325-PA 270 GK25325-PA 3..270 6..278 1011 74.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17689-PA 275 GE17689-PA 1..233 1..233 1066 93.1 Plus