Clone RE24790 Report

Search the DGRC for RE24790

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:247
Well:90
Vector:pFlc-1
Associated Gene/TranscriptCG42749-RB
Protein status:RE24790.pep: gold
Preliminary Size:852
Sequenced Size:1408

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15786 2002-01-01 Sim4 clustering to Release 2
CG15786 2002-05-17 Blastp of sequenced clone
CG15786 2003-01-01 Sim4 clustering to Release 3
CG15786 2008-04-29 Release 5.5 accounting
CG15786 2008-08-15 Release 5.9 accounting
CG15786 2008-12-18 5.12 accounting

Clone Sequence Records

RE24790.complete Sequence

1408 bp (1408 high quality bases) assembled on 2002-05-17

GenBank Submission: AY119122

> RE24790.complete
TCAGTACGTTGCCGCTGCGCAAACGCAAAGCACGCGATATATACACAACC
CAATACACACGCACACACACGCACACACACACACACACACACTTCCTACG
CCACGCCCACGCCGCCGAAACGCCCACGCAAGCCGGCTTGCAGGATTTCG
CCCATCTGAAGTTTTCTCTTGGTATTCCTGTGTGTGCGTGAAAAATTTTA
AGTGCGGAATGCAGCGTAAATTACACAAAAATATTCAGGCAACTGGACAT
CTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCCACAATGGG
CGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTGA
TGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAAT
GCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATGA
GCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGTT
GCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGAG
GCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCGG
TCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGTT
TCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACAG
CAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATCG
GTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAGG
TACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGACC
TACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCGT
TGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATCG
TTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATCG
CCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGACAACAACAT
CTTTCCACTTATTGTGCGCAATGCCACGCGGCATGCACGCAAACAAGGCA
AGGCTAAGCCGCCTGGCCGTTAAACAGCTTACCCGATACCTGCTTAAAAC
CGCTTACCCGCTTACCCGCTACCCGATCGCAAACCGATTTGATTACGTTT
TTCTAGCCCTAGTCGAAACAGCTATGCACCCGCGTTCGGATGGAATCCCG
CCCGAATCGGGTCAGAGTTCAAACGAGTAACGGGTAAAGGTAAATTTCTC
CACCGCCTACATTTAAGATTTTAAACGGTTATGGTACACACACGCACAGG
CACTGCTGTACATAAAGAAATGCTTGAATAAACTTAAAACCTAAAAAAAA
AAAAAAAA

RE24790.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15786-RA 1395 CG15786-RA 1..1393 1..1393 6935 99.8 Plus
CG15785.a 1383 CG15785.a 1..1068 1..1068 5310 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5193992..5194587 322..917 2950 99.7 Plus
chrX 22417052 chrX 5195101..5195425 1068..1392 1610 99.7 Plus
chrX 22417052 chrX 5194646..5194799 915..1068 755 99.4 Plus
chrX 22417052 chrX 5188627..5188778 1..162 610 93.2 Plus
chrX 22417052 chrX 5193847..5193932 237..322 430 100 Plus
chrX 22417052 chrX 5188851..5188927 163..239 355 97.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5301464..5302059 322..917 2980 100 Plus
X 23542271 X 5302570..5302895 1068..1393 1630 100 Plus
X 23542271 X 5296081..5296242 1..162 795 99.4 Plus
X 23542271 X 5302118..5302271 915..1068 770 100 Plus
X 23542271 X 5301319..5301404 237..322 430 100 Plus
X 23542271 X 5296319..5296395 163..239 370 98.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5309562..5310157 322..917 2980 100 Plus
X 23527363 X 5310668..5310993 1068..1393 1630 100 Plus
X 23527363 X 5304179..5304340 1..162 795 99.3 Plus
X 23527363 X 5310216..5310369 915..1068 770 100 Plus
X 23527363 X 5309417..5309502 237..322 430 100 Plus
X 23527363 X 5304417..5304493 163..239 370 98.7 Plus
Blast to na_te.dros performed on 2019-03-16 04:51:32 has no hits.

RE24790.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:52:14 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5188627..5188778 1..162 93 -> Plus
chrX 5188851..5188926 163..238 97 -> Plus
chrX 5193849..5193932 239..322 100 -> Plus
chrX 5193993..5194587 323..917 99 -> Plus
chrX 5194649..5194799 918..1068 99 -> Plus
chrX 5195102..5195425 1069..1392 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:17 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 1..858 266..1123 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:15 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 1..858 266..1123 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:43:48 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 1..858 266..1123 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:44 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 1..858 266..1123 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:52:29 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 1..858 266..1123 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:43 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 1..1392 1..1392 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:15 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 1..1392 1..1392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:48 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 16..1407 1..1392 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:44 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG15786-RA 1..1392 1..1392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:52:29 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RB 16..1407 1..1392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:14 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
X 5296081..5296242 1..162 99 -> Plus
X 5296319..5296394 163..238 98 -> Plus
X 5301321..5301404 239..322 100 -> Plus
X 5301465..5302059 323..917 100 -> Plus
X 5302121..5302271 918..1068 100 -> Plus
X 5302571..5302894 1069..1392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:14 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
X 5296081..5296242 1..162 99 -> Plus
X 5296319..5296394 163..238 98 -> Plus
X 5301321..5301404 239..322 100 -> Plus
X 5301465..5302059 323..917 100 -> Plus
X 5302121..5302271 918..1068 100 -> Plus
X 5302571..5302894 1069..1392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:14 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
X 5296081..5296242 1..162 99 -> Plus
X 5296319..5296394 163..238 98 -> Plus
X 5301321..5301404 239..322 100 -> Plus
X 5301465..5302059 323..917 100 -> Plus
X 5302121..5302271 918..1068 100 -> Plus
X 5302571..5302894 1069..1392 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:48 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5190114..5190275 1..162 99 -> Plus
arm_X 5190352..5190427 163..238 98 -> Plus
arm_X 5195354..5195437 239..322 100 -> Plus
arm_X 5195498..5196092 323..917 100 -> Plus
arm_X 5196154..5196304 918..1068 100 -> Plus
arm_X 5196604..5196927 1069..1392 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:03 Download gff for RE24790.complete
Subject Subject Range Query Range Percent Splice Strand
X 5309563..5310157 323..917 100 -> Plus
X 5310219..5310369 918..1068 100 -> Plus
X 5310669..5310992 1069..1392 100   Plus
X 5304179..5304340 1..162 99 -> Plus
X 5304417..5304492 163..238 98 -> Plus
X 5309419..5309502 239..322 100 -> Plus

RE24790.hyp Sequence

Translation from 0 to 1122

> RE24790.hyp
QNVAAAQTQSTRYIHNPIHTHTHAHTHTHTLPTPRPRRRNAHASRLAGFR
PSEVFSWYSCVCVKNFKCGVQRKLHKNIQATGHLRQSGMAMRHLTAATMG
VLLPVGVLGFVVLMQLMASVRGHGRLMDPPARNAMWRFGYPNPVNYNDNE
LFCGGYAVQWEQNKGRCGICGDAYHVKSPRPHEAGGQYAKGIISRYYTAG
QTIDVEVELTANHYGRFEMFLCPNNNPRQEATQQCFDRYPLLISGSREHR
YLIPRDAKKKDIFRYKVRLPPYVTCTQCVLQWTYYTANMWGTCANGTEAV
GCGKAETFRNCADVAIVSNTGGGIPPPFVNNKSPYLLYYRDYRAPADNNI
FPLIVRNATRHARKQGKAKPPGR*

RE24790.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-PB 285 CG15786-PA 1..285 89..373 1573 100 Plus
CG42749-PC 345 CG42749-PC 1..269 89..357 1482 99.6 Plus
CG42749-PD 345 CG42749-PD 1..269 89..357 1482 99.6 Plus
CG42598-PB 340 CG42598-PB 1..226 94..318 489 41.6 Plus
CG41284-PC 340 CG41284-PC 1..226 94..318 481 41.1 Plus

RE24790.pep Sequence

Translation from 208 to 1122

> RE24790.pep
MQRKLHKNIQATGHLRQSGMAMRHLTAATMGVLLPVGVLGFVVLMQLMAS
VRGHGRLMDPPARNAMWRFGYPNPVNYNDNELFCGGYAVQWEQNKGRCGI
CGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDVEVELTANHYGRFEM
FLCPNNNPRQEATQQCFDRYPLLISGSREHRYLIPRDAKKKDIFRYKVRL
PPYVTCTQCVLQWTYYTANMWGTCANGTEAVGCGKAETFRNCADVAIVSN
TGGGIPPPFVNNKSPYLLYYRDYRAPADNNIFPLIVRNATRHARKQGKAK
PPGR*

RE24790.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21331-PA 234 GF21331-PA 1..234 66..299 1225 93.2 Plus
Dana\GF17331-PA 230 GF17331-PA 17..214 47..250 451 38.7 Plus
Dana\GF17787-PA 233 GF17787-PA 1..209 30..247 424 42 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18746-PA 284 GG18746-PA 5..284 23..304 1455 96.1 Plus
Dere\GG15565-PA 230 GG15565-PA 6..214 41..250 448 39.1 Plus
Dere\GG15554-PA 233 GG15554-PA 1..210 22..247 419 38.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24606-PA 281 GH24606-PA 8..279 23..302 1271 83.9 Plus
Dgri\GH19593-PA 370 GH19593-PA 23..221 53..250 487 44.7 Plus
Dgri\GH23904-PA 231 GH23904-PA 17..211 48..248 452 40.3 Plus
Dgri\GH23898-PA 210 GH23898-PA 1..209 30..247 444 42.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-PB 285 CG15786-PA 1..285 20..304 1573 100 Plus
CG42749-PC 345 CG42749-PC 1..269 20..288 1482 99.6 Plus
CG42749-PD 345 CG42749-PD 1..269 20..288 1482 99.6 Plus
CG42598-PB 340 CG42598-PB 1..226 25..249 489 41.6 Plus
CG41284-PC 340 CG41284-PC 1..226 25..249 481 41.1 Plus
CG4367-PD 230 CG4367-PD 18..214 48..250 447 39.4 Plus
CG4367-PC 230 CG4367-PC 18..214 48..250 447 39.4 Plus
CG4362-PA 233 CG4362-PA 1..210 30..247 426 43.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15275-PA 244 GI15275-PA 1..242 58..302 1245 91 Plus
Dmoj\GI23986-PA 373 GI23986-PA 9..235 24..251 507 43 Plus
Dmoj\GI10048-PA 245 GI10048-PA 6..221 38..255 466 38.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14286-PA 242 GL14286-PA 1..242 58..299 1251 92.1 Plus
Dper\GL12291-PA 365 GL12291-PA 22..227 47..251 498 44.6 Plus
Dper\GL12511-PA 229 GL12511-PA 6..214 32..250 441 39.3 Plus
Dper\GL12510-PA 235 GL12510-PA 1..210 30..247 426 41.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13958-PA 242 GA13958-PA 1..242 58..299 1251 92.1 Plus
Dpse\GA26262-PB 365 GA26262-PB 22..227 47..251 494 44.1 Plus
Dpse\GA18137-PA 229 GA18137-PA 6..214 32..250 445 39.7 Plus
Dpse\GA18137-PB 212 GA18137-PB 1..197 48..250 436 40.9 Plus
Dpse\GA18133-PA 235 GA18133-PA 1..210 30..247 427 41.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12394-PA 285 GM12394-PA 1..285 20..304 1502 96.8 Plus
Dsec\GM23200-PA 233 GM23200-PA 1..210 22..247 430 41 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20074-PA 219 GD20074-PA 3..203 44..250 440 38.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16848-PA 256 GJ16848-PA 2..254 47..302 1274 89.5 Plus
Dvir\GJ23782-PA 235 GJ23782-PA 1..216 22..253 505 42.1 Plus
Dvir\GJ23780-PA 247 GJ23780-PA 1..218 30..247 453 42.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10292-PA 255 GK10292-PA 10..255 42..287 1255 90.7 Plus
Dwil\GK12912-PA 379 GK12912-PA 20..234 41..250 516 44.6 Plus
Dwil\GK12183-PA 253 GK12183-PA 7..224 32..259 465 40.2 Plus
Dwil\GK12182-PA 238 GK12182-PA 9..226 42..257 390 39.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16388-PA 283 GE16388-PA 1..283 20..304 1449 94.7 Plus
Dyak\GE25083-PA 230 GE25083-PA 8..214 32..250 442 37.9 Plus
Dyak\GE25081-PA 233 GE25081-PA 1..226 30..265 429 39.1 Plus