BDGP Sequence Production Resources |
Search the DGRC for RE24790
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 247 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42749-RB |
Protein status: | RE24790.pep: gold |
Preliminary Size: | 852 |
Sequenced Size: | 1408 |
Gene | Date | Evidence |
---|---|---|
CG15786 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15786 | 2002-05-17 | Blastp of sequenced clone |
CG15786 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15786 | 2008-04-29 | Release 5.5 accounting |
CG15786 | 2008-08-15 | Release 5.9 accounting |
CG15786 | 2008-12-18 | 5.12 accounting |
1408 bp (1408 high quality bases) assembled on 2002-05-17
GenBank Submission: AY119122
> RE24790.complete TCAGTACGTTGCCGCTGCGCAAACGCAAAGCACGCGATATATACACAACC CAATACACACGCACACACACGCACACACACACACACACACACTTCCTACG CCACGCCCACGCCGCCGAAACGCCCACGCAAGCCGGCTTGCAGGATTTCG CCCATCTGAAGTTTTCTCTTGGTATTCCTGTGTGTGCGTGAAAAATTTTA AGTGCGGAATGCAGCGTAAATTACACAAAAATATTCAGGCAACTGGACAT CTGAGGCAATCTGGCATGGCGATGCGACACTTGACAGCTGCCACAATGGG CGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTGA TGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAAT GCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATGA GCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGTT GCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGAG GCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCGG TCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGTT TCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACAG CAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATCG GTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAGG TACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGACC TACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCGT TGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATCG TTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATCG CCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGACAACAACAT CTTTCCACTTATTGTGCGCAATGCCACGCGGCATGCACGCAAACAAGGCA AGGCTAAGCCGCCTGGCCGTTAAACAGCTTACCCGATACCTGCTTAAAAC CGCTTACCCGCTTACCCGCTACCCGATCGCAAACCGATTTGATTACGTTT TTCTAGCCCTAGTCGAAACAGCTATGCACCCGCGTTCGGATGGAATCCCG CCCGAATCGGGTCAGAGTTCAAACGAGTAACGGGTAAAGGTAAATTTCTC CACCGCCTACATTTAAGATTTTAAACGGTTATGGTACACACACGCACAGG CACTGCTGTACATAAAGAAATGCTTGAATAAACTTAAAACCTAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5193992..5194587 | 322..917 | 2950 | 99.7 | Plus |
chrX | 22417052 | chrX | 5195101..5195425 | 1068..1392 | 1610 | 99.7 | Plus |
chrX | 22417052 | chrX | 5194646..5194799 | 915..1068 | 755 | 99.4 | Plus |
chrX | 22417052 | chrX | 5188627..5188778 | 1..162 | 610 | 93.2 | Plus |
chrX | 22417052 | chrX | 5193847..5193932 | 237..322 | 430 | 100 | Plus |
chrX | 22417052 | chrX | 5188851..5188927 | 163..239 | 355 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 5301464..5302059 | 322..917 | 2980 | 100 | Plus |
X | 23542271 | X | 5302570..5302895 | 1068..1393 | 1630 | 100 | Plus |
X | 23542271 | X | 5296081..5296242 | 1..162 | 795 | 99.4 | Plus |
X | 23542271 | X | 5302118..5302271 | 915..1068 | 770 | 100 | Plus |
X | 23542271 | X | 5301319..5301404 | 237..322 | 430 | 100 | Plus |
X | 23542271 | X | 5296319..5296395 | 163..239 | 370 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 5309562..5310157 | 322..917 | 2980 | 100 | Plus |
X | 23527363 | X | 5310668..5310993 | 1068..1393 | 1630 | 100 | Plus |
X | 23527363 | X | 5304179..5304340 | 1..162 | 795 | 99.3 | Plus |
X | 23527363 | X | 5310216..5310369 | 915..1068 | 770 | 100 | Plus |
X | 23527363 | X | 5309417..5309502 | 237..322 | 430 | 100 | Plus |
X | 23527363 | X | 5304417..5304493 | 163..239 | 370 | 98.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5188627..5188778 | 1..162 | 93 | -> | Plus |
chrX | 5188851..5188926 | 163..238 | 97 | -> | Plus |
chrX | 5193849..5193932 | 239..322 | 100 | -> | Plus |
chrX | 5193993..5194587 | 323..917 | 99 | -> | Plus |
chrX | 5194649..5194799 | 918..1068 | 99 | -> | Plus |
chrX | 5195102..5195425 | 1069..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15786-RA | 1..858 | 266..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42749-RB | 1..858 | 266..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42749-RB | 1..858 | 266..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15786-RA | 1..858 | 266..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42749-RB | 1..858 | 266..1123 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15786-RA | 1..1392 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42749-RB | 1..1392 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42749-RB | 16..1407 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15786-RA | 1..1392 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42749-RB | 16..1407 | 1..1392 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5296081..5296242 | 1..162 | 99 | -> | Plus |
X | 5296319..5296394 | 163..238 | 98 | -> | Plus |
X | 5301321..5301404 | 239..322 | 100 | -> | Plus |
X | 5301465..5302059 | 323..917 | 100 | -> | Plus |
X | 5302121..5302271 | 918..1068 | 100 | -> | Plus |
X | 5302571..5302894 | 1069..1392 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5296081..5296242 | 1..162 | 99 | -> | Plus |
X | 5296319..5296394 | 163..238 | 98 | -> | Plus |
X | 5301321..5301404 | 239..322 | 100 | -> | Plus |
X | 5301465..5302059 | 323..917 | 100 | -> | Plus |
X | 5302121..5302271 | 918..1068 | 100 | -> | Plus |
X | 5302571..5302894 | 1069..1392 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5296081..5296242 | 1..162 | 99 | -> | Plus |
X | 5296319..5296394 | 163..238 | 98 | -> | Plus |
X | 5301321..5301404 | 239..322 | 100 | -> | Plus |
X | 5301465..5302059 | 323..917 | 100 | -> | Plus |
X | 5302121..5302271 | 918..1068 | 100 | -> | Plus |
X | 5302571..5302894 | 1069..1392 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5190114..5190275 | 1..162 | 99 | -> | Plus |
arm_X | 5190352..5190427 | 163..238 | 98 | -> | Plus |
arm_X | 5195354..5195437 | 239..322 | 100 | -> | Plus |
arm_X | 5195498..5196092 | 323..917 | 100 | -> | Plus |
arm_X | 5196154..5196304 | 918..1068 | 100 | -> | Plus |
arm_X | 5196604..5196927 | 1069..1392 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5309563..5310157 | 323..917 | 100 | -> | Plus |
X | 5310219..5310369 | 918..1068 | 100 | -> | Plus |
X | 5310669..5310992 | 1069..1392 | 100 | Plus | |
X | 5304179..5304340 | 1..162 | 99 | -> | Plus |
X | 5304417..5304492 | 163..238 | 98 | -> | Plus |
X | 5309419..5309502 | 239..322 | 100 | -> | Plus |
Translation from 0 to 1122
> RE24790.hyp QNVAAAQTQSTRYIHNPIHTHTHAHTHTHTLPTPRPRRRNAHASRLAGFR PSEVFSWYSCVCVKNFKCGVQRKLHKNIQATGHLRQSGMAMRHLTAATMG VLLPVGVLGFVVLMQLMASVRGHGRLMDPPARNAMWRFGYPNPVNYNDNE LFCGGYAVQWEQNKGRCGICGDAYHVKSPRPHEAGGQYAKGIISRYYTAG QTIDVEVELTANHYGRFEMFLCPNNNPRQEATQQCFDRYPLLISGSREHR YLIPRDAKKKDIFRYKVRLPPYVTCTQCVLQWTYYTANMWGTCANGTEAV GCGKAETFRNCADVAIVSNTGGGIPPPFVNNKSPYLLYYRDYRAPADNNI FPLIVRNATRHARKQGKAKPPGR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42749-PB | 285 | CG15786-PA | 1..285 | 89..373 | 1573 | 100 | Plus |
CG42749-PC | 345 | CG42749-PC | 1..269 | 89..357 | 1482 | 99.6 | Plus |
CG42749-PD | 345 | CG42749-PD | 1..269 | 89..357 | 1482 | 99.6 | Plus |
CG42598-PB | 340 | CG42598-PB | 1..226 | 94..318 | 489 | 41.6 | Plus |
CG41284-PC | 340 | CG41284-PC | 1..226 | 94..318 | 481 | 41.1 | Plus |
Translation from 208 to 1122
> RE24790.pep MQRKLHKNIQATGHLRQSGMAMRHLTAATMGVLLPVGVLGFVVLMQLMAS VRGHGRLMDPPARNAMWRFGYPNPVNYNDNELFCGGYAVQWEQNKGRCGI CGDAYHVKSPRPHEAGGQYAKGIISRYYTAGQTIDVEVELTANHYGRFEM FLCPNNNPRQEATQQCFDRYPLLISGSREHRYLIPRDAKKKDIFRYKVRL PPYVTCTQCVLQWTYYTANMWGTCANGTEAVGCGKAETFRNCADVAIVSN TGGGIPPPFVNNKSPYLLYYRDYRAPADNNIFPLIVRNATRHARKQGKAK PPGR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21331-PA | 234 | GF21331-PA | 1..234 | 66..299 | 1225 | 93.2 | Plus |
Dana\GF17331-PA | 230 | GF17331-PA | 17..214 | 47..250 | 451 | 38.7 | Plus |
Dana\GF17787-PA | 233 | GF17787-PA | 1..209 | 30..247 | 424 | 42 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18746-PA | 284 | GG18746-PA | 5..284 | 23..304 | 1455 | 96.1 | Plus |
Dere\GG15565-PA | 230 | GG15565-PA | 6..214 | 41..250 | 448 | 39.1 | Plus |
Dere\GG15554-PA | 233 | GG15554-PA | 1..210 | 22..247 | 419 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24606-PA | 281 | GH24606-PA | 8..279 | 23..302 | 1271 | 83.9 | Plus |
Dgri\GH19593-PA | 370 | GH19593-PA | 23..221 | 53..250 | 487 | 44.7 | Plus |
Dgri\GH23904-PA | 231 | GH23904-PA | 17..211 | 48..248 | 452 | 40.3 | Plus |
Dgri\GH23898-PA | 210 | GH23898-PA | 1..209 | 30..247 | 444 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42749-PB | 285 | CG15786-PA | 1..285 | 20..304 | 1573 | 100 | Plus |
CG42749-PC | 345 | CG42749-PC | 1..269 | 20..288 | 1482 | 99.6 | Plus |
CG42749-PD | 345 | CG42749-PD | 1..269 | 20..288 | 1482 | 99.6 | Plus |
CG42598-PB | 340 | CG42598-PB | 1..226 | 25..249 | 489 | 41.6 | Plus |
CG41284-PC | 340 | CG41284-PC | 1..226 | 25..249 | 481 | 41.1 | Plus |
CG4367-PD | 230 | CG4367-PD | 18..214 | 48..250 | 447 | 39.4 | Plus |
CG4367-PC | 230 | CG4367-PC | 18..214 | 48..250 | 447 | 39.4 | Plus |
CG4362-PA | 233 | CG4362-PA | 1..210 | 30..247 | 426 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15275-PA | 244 | GI15275-PA | 1..242 | 58..302 | 1245 | 91 | Plus |
Dmoj\GI23986-PA | 373 | GI23986-PA | 9..235 | 24..251 | 507 | 43 | Plus |
Dmoj\GI10048-PA | 245 | GI10048-PA | 6..221 | 38..255 | 466 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14286-PA | 242 | GL14286-PA | 1..242 | 58..299 | 1251 | 92.1 | Plus |
Dper\GL12291-PA | 365 | GL12291-PA | 22..227 | 47..251 | 498 | 44.6 | Plus |
Dper\GL12511-PA | 229 | GL12511-PA | 6..214 | 32..250 | 441 | 39.3 | Plus |
Dper\GL12510-PA | 235 | GL12510-PA | 1..210 | 30..247 | 426 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13958-PA | 242 | GA13958-PA | 1..242 | 58..299 | 1251 | 92.1 | Plus |
Dpse\GA26262-PB | 365 | GA26262-PB | 22..227 | 47..251 | 494 | 44.1 | Plus |
Dpse\GA18137-PA | 229 | GA18137-PA | 6..214 | 32..250 | 445 | 39.7 | Plus |
Dpse\GA18137-PB | 212 | GA18137-PB | 1..197 | 48..250 | 436 | 40.9 | Plus |
Dpse\GA18133-PA | 235 | GA18133-PA | 1..210 | 30..247 | 427 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12394-PA | 285 | GM12394-PA | 1..285 | 20..304 | 1502 | 96.8 | Plus |
Dsec\GM23200-PA | 233 | GM23200-PA | 1..210 | 22..247 | 430 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20074-PA | 219 | GD20074-PA | 3..203 | 44..250 | 440 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16848-PA | 256 | GJ16848-PA | 2..254 | 47..302 | 1274 | 89.5 | Plus |
Dvir\GJ23782-PA | 235 | GJ23782-PA | 1..216 | 22..253 | 505 | 42.1 | Plus |
Dvir\GJ23780-PA | 247 | GJ23780-PA | 1..218 | 30..247 | 453 | 42.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10292-PA | 255 | GK10292-PA | 10..255 | 42..287 | 1255 | 90.7 | Plus |
Dwil\GK12912-PA | 379 | GK12912-PA | 20..234 | 41..250 | 516 | 44.6 | Plus |
Dwil\GK12183-PA | 253 | GK12183-PA | 7..224 | 32..259 | 465 | 40.2 | Plus |
Dwil\GK12182-PA | 238 | GK12182-PA | 9..226 | 42..257 | 390 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16388-PA | 283 | GE16388-PA | 1..283 | 20..304 | 1449 | 94.7 | Plus |
Dyak\GE25083-PA | 230 | GE25083-PA | 8..214 | 32..250 | 442 | 37.9 | Plus |
Dyak\GE25081-PA | 233 | GE25081-PA | 1..226 | 30..265 | 429 | 39.1 | Plus |