BDGP Sequence Production Resources |
Search the DGRC for RE24819
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 248 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Vps60-RA |
Protein status: | RE24819.pep: gold |
Sequenced Size: | 990 |
Gene | Date | Evidence |
---|---|---|
CG6259 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6259 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6259 | 2003-08-05 | Blastp of sequenced clone |
CG6259 | 2008-04-29 | Release 5.5 accounting |
CG6259 | 2008-08-15 | Release 5.9 accounting |
CG6259 | 2008-12-18 | 5.12 accounting |
990 bp (990 high quality bases) assembled on 2003-08-05
GenBank Submission: AY071206
> RE24819.complete ATAGGAAAAAGAAGAAGACAATTAGTCATCAAACAAAATTTGTAGAACGA ATTAAAGTGGAAAACCCACAAATTTCCCATAAATTTTGCGTGTTGTAGTT AAAATAATAAAGCAGTCAATATGAATCGCCTTTTTGGTCGTGGTAAGCCC AAGGAGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCG AGCAACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCA AATACCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCC GTGAAACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACA GCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACT ATGCGGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAG GATGGAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCA GATCGAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACG AGGTGCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGAC GACGACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGA CGATGACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGA GTCGAGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAA ACGGATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACATA GGCAAGCTGCCAAGCTGCCAGCTCTCATGTTTCCATTCTTTATCCTTTGT TGAACCTTGGGCACGCTTTGTATATTTTATGTGTAATGGAGCCATCAAAG ATTCCCTCTCAAGTCTCACTTTTGTAACCATTTGTTTTTTCAATAAATAG CCGTTTAGTTATCACGCCACACTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6259-RA | 1128 | CG6259-RA | 128..1100 | 1..973 | 4865 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 17609703..17609939 | 973..737 | 1185 | 100 | Minus |
chr3L | 24539361 | chr3L | 17609999..17610231 | 738..506 | 1165 | 100 | Minus |
chr3L | 24539361 | chr3L | 17610888..17611078 | 191..1 | 955 | 100 | Minus |
chr3L | 24539361 | chr3L | 17610308..17610474 | 508..342 | 835 | 100 | Minus |
chr3L | 24539361 | chr3L | 17610676..17610833 | 346..189 | 760 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 17620123..17620359 | 973..737 | 1185 | 100 | Minus |
3L | 28110227 | 3L | 17620419..17620651 | 738..506 | 1165 | 100 | Minus |
3L | 28110227 | 3L | 17621308..17621498 | 191..1 | 955 | 100 | Minus |
3L | 28110227 | 3L | 17620728..17620894 | 508..342 | 835 | 100 | Minus |
3L | 28110227 | 3L | 17621096..17621253 | 346..189 | 775 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 17613223..17613459 | 973..737 | 1185 | 100 | Minus |
3L | 28103327 | 3L | 17613519..17613751 | 738..506 | 1165 | 100 | Minus |
3L | 28103327 | 3L | 17614408..17614598 | 191..1 | 955 | 100 | Minus |
3L | 28103327 | 3L | 17613828..17613994 | 508..342 | 835 | 100 | Minus |
3L | 28103327 | 3L | 17614196..17614353 | 346..189 | 775 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3561..3670 | 417..525 | 115 | 57.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 17610890..17611078 | 1..189 | 100 | Minus | |
chr3L | 17609702..17609937 | 739..974 | 99 | <- | Minus |
chr3L | 17609999..17610229 | 508..738 | 100 | <- | Minus |
chr3L | 17610309..17610474 | 342..507 | 100 | <- | Minus |
chr3L | 17610681..17610832 | 190..341 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 1..681 | 121..801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 1..681 | 121..801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 1..681 | 121..801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 1..681 | 121..801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps60-RA | 1..681 | 121..801 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 1..973 | 1..974 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 1..973 | 1..974 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 8..980 | 1..973 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6259-RA | 1..973 | 1..974 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps60-RA | 8..980 | 1..973 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17620122..17620357 | 739..974 | 99 | <- | Minus |
3L | 17620419..17620649 | 508..738 | 100 | <- | Minus |
3L | 17620729..17620894 | 342..507 | 100 | <- | Minus |
3L | 17621101..17621252 | 190..341 | 100 | <- | Minus |
3L | 17621310..17621498 | 1..189 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17620122..17620357 | 739..974 | 99 | <- | Minus |
3L | 17620419..17620649 | 508..738 | 100 | <- | Minus |
3L | 17620729..17620894 | 342..507 | 100 | <- | Minus |
3L | 17621101..17621252 | 190..341 | 100 | <- | Minus |
3L | 17621310..17621498 | 1..189 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17620122..17620357 | 739..974 | 99 | <- | Minus |
3L | 17620419..17620649 | 508..738 | 100 | <- | Minus |
3L | 17620729..17620894 | 342..507 | 100 | <- | Minus |
3L | 17621101..17621252 | 190..341 | 100 | <- | Minus |
3L | 17621310..17621498 | 1..189 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 17613222..17613457 | 739..974 | 99 | <- | Minus |
arm_3L | 17613519..17613749 | 508..738 | 100 | <- | Minus |
arm_3L | 17613829..17613994 | 342..507 | 100 | <- | Minus |
arm_3L | 17614201..17614352 | 190..341 | 100 | <- | Minus |
arm_3L | 17614410..17614598 | 1..189 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17614201..17614352 | 190..341 | 100 | <- | Minus |
3L | 17614410..17614598 | 1..189 | 100 | Minus | |
3L | 17613222..17613457 | 739..974 | 99 | <- | Minus |
3L | 17613519..17613749 | 508..738 | 100 | <- | Minus |
3L | 17613829..17613994 | 342..507 | 100 | <- | Minus |
Translation from 120 to 800
> RE24819.pep MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD SIVPGKSTIETDEFGLPKIPTSLKTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23900-PA | 226 | GF23900-PA | 1..226 | 1..226 | 1064 | 93.8 | Plus |
Dana\GF12950-PA | 226 | GF12950-PA | 3..191 | 4..194 | 149 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15798-PA | 226 | GG15798-PA | 1..226 | 1..226 | 1174 | 99.6 | Plus |
Dere\GG10579-PA | 226 | GG10579-PA | 3..191 | 4..194 | 150 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15350-PA | 226 | GH15350-PA | 1..226 | 1..226 | 1105 | 92.5 | Plus |
Dgri\GH19872-PA | 228 | GH19872-PA | 3..191 | 4..194 | 155 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps60-PB | 226 | CG6259-PB | 1..226 | 1..226 | 1144 | 100 | Plus |
Vps60-PA | 226 | CG6259-PA | 1..226 | 1..226 | 1144 | 100 | Plus |
shrb-PA | 226 | CG8055-PA | 4..193 | 5..196 | 191 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12953-PA | 226 | GI12953-PA | 1..226 | 1..226 | 1054 | 92.9 | Plus |
Dmoj\GI19821-PA | 227 | GI19821-PA | 3..191 | 4..194 | 154 | 27.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25031-PA | 208 | GL25031-PA | 1..208 | 1..226 | 896 | 83.2 | Plus |
Dper\GL17464-PA | 231 | GL17464-PA | 3..170 | 4..173 | 151 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19474-PA | 228 | GA19474-PA | 1..228 | 1..226 | 1055 | 93.9 | Plus |
Dpse\GA20793-PA | 231 | GA20793-PA | 3..170 | 4..173 | 151 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24320-PA | 304 | GM24320-PA | 102..304 | 24..226 | 1034 | 99.5 | Plus |
Dsec\GM20627-PA | 226 | GM20627-PA | 3..191 | 4..194 | 155 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12393-PA | 226 | GD12393-PA | 1..226 | 1..226 | 1174 | 99.6 | Plus |
Dsim\GD10100-PA | 226 | GD10100-PA | 3..191 | 4..194 | 155 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13097-PA | 226 | GJ13097-PA | 1..226 | 1..226 | 1062 | 94.2 | Plus |
Dvir\GJ18577-PA | 228 | GJ18577-PA | 3..191 | 4..194 | 155 | 27.5 | Plus |
Translation from 120 to 800
> RE24819.hyp MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD SIVPGKSTIETDEFGLPKIPTSLKTT*