Clone RE24819 Report

Search the DGRC for RE24819

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:248
Well:19
Vector:pFlc-1
Associated Gene/TranscriptVps60-RA
Protein status:RE24819.pep: gold
Sequenced Size:990

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6259 2002-01-01 Sim4 clustering to Release 2
CG6259 2003-01-01 Sim4 clustering to Release 3
CG6259 2003-08-05 Blastp of sequenced clone
CG6259 2008-04-29 Release 5.5 accounting
CG6259 2008-08-15 Release 5.9 accounting
CG6259 2008-12-18 5.12 accounting

Clone Sequence Records

RE24819.complete Sequence

990 bp (990 high quality bases) assembled on 2003-08-05

GenBank Submission: AY071206

> RE24819.complete
ATAGGAAAAAGAAGAAGACAATTAGTCATCAAACAAAATTTGTAGAACGA
ATTAAAGTGGAAAACCCACAAATTTCCCATAAATTTTGCGTGTTGTAGTT
AAAATAATAAAGCAGTCAATATGAATCGCCTTTTTGGTCGTGGTAAGCCC
AAGGAGCCGGGTCCAAGTCTAAACGATTGCATCGCCGGGGTCGATGCCCG
AGCAACAAACATCGAAGAGAAGATCAGTAATCTGGAGGCAGAGCTGCGCA
AATACCGCGAACAAATGTCCAAGATGCGAGAAGGTCCTGCCAAGAACTCC
GTGAAACAGAAGGCCCTCCGGGTTCTCAAACAAAAGAAGGCCTACGAACA
GCAGGCAGAATCTCTGCGCAACCAGTCGTTCAACATGGAACAGGCCAACT
ATGCGGCGCAATCCTTGAAGGATACTCAGGCCACCGTGGCGGCCATGAAG
GATGGAGTCAAGCAGATGAAGACCGAGTACAAGAAGATCAACATCGACCA
GATCGAGGACATCCAAGACGACATGGCTGATATGTTTGAGCAGGCGGACG
AGGTGCAGGAGGCACTGGGCCGCACGTACGGCATGCCTGAGGTGGATGAC
GACGACCTGCAGGCCGAGTTGGATGCTCTGGGCGATGAGATTGCCTTGGA
CGATGACACCAGCTATTTGGATGACGTGGTCAAGGCTCCGGAGGCGCCGA
GTCGAGAGCCGGGAGCTGACAGCATCGTCCCTGGAAAGAGCACCATTGAA
ACGGATGAGTTCGGCTTGCCCAAGATTCCGACATCGCTGAAGACCACATA
GGCAAGCTGCCAAGCTGCCAGCTCTCATGTTTCCATTCTTTATCCTTTGT
TGAACCTTGGGCACGCTTTGTATATTTTATGTGTAATGGAGCCATCAAAG
ATTCCCTCTCAAGTCTCACTTTTGTAACCATTTGTTTTTTCAATAAATAG
CCGTTTAGTTATCACGCCACACTGAAAAAAAAAAAAAAAA

RE24819.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6259-RA 1128 CG6259-RA 128..1100 1..973 4865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17609703..17609939 973..737 1185 100 Minus
chr3L 24539361 chr3L 17609999..17610231 738..506 1165 100 Minus
chr3L 24539361 chr3L 17610888..17611078 191..1 955 100 Minus
chr3L 24539361 chr3L 17610308..17610474 508..342 835 100 Minus
chr3L 24539361 chr3L 17610676..17610833 346..189 760 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17620123..17620359 973..737 1185 100 Minus
3L 28110227 3L 17620419..17620651 738..506 1165 100 Minus
3L 28110227 3L 17621308..17621498 191..1 955 100 Minus
3L 28110227 3L 17620728..17620894 508..342 835 100 Minus
3L 28110227 3L 17621096..17621253 346..189 775 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17613223..17613459 973..737 1185 100 Minus
3L 28103327 3L 17613519..17613751 738..506 1165 100 Minus
3L 28103327 3L 17614408..17614598 191..1 955 100 Minus
3L 28103327 3L 17613828..17613994 508..342 835 100 Minus
3L 28103327 3L 17614196..17614353 346..189 775 99.3 Minus
Blast to na_te.dros performed 2019-03-16 22:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3561..3670 417..525 115 57.3 Plus

RE24819.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:48:45 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17610890..17611078 1..189 100   Minus
chr3L 17609702..17609937 739..974 99 <- Minus
chr3L 17609999..17610229 508..738 100 <- Minus
chr3L 17610309..17610474 342..507 100 <- Minus
chr3L 17610681..17610832 190..341 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:20 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..681 121..801 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:42 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..681 121..801 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:16:43 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..681 121..801 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:48 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..681 121..801 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:24 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 1..681 121..801 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:26 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..973 1..974 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:41 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..973 1..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:16:43 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 8..980 1..973 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:48 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
CG6259-RA 1..973 1..974 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:24 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
Vps60-RA 8..980 1..973 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:45 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17620122..17620357 739..974 99 <- Minus
3L 17620419..17620649 508..738 100 <- Minus
3L 17620729..17620894 342..507 100 <- Minus
3L 17621101..17621252 190..341 100 <- Minus
3L 17621310..17621498 1..189 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:45 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17620122..17620357 739..974 99 <- Minus
3L 17620419..17620649 508..738 100 <- Minus
3L 17620729..17620894 342..507 100 <- Minus
3L 17621101..17621252 190..341 100 <- Minus
3L 17621310..17621498 1..189 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:45 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17620122..17620357 739..974 99 <- Minus
3L 17620419..17620649 508..738 100 <- Minus
3L 17620729..17620894 342..507 100 <- Minus
3L 17621101..17621252 190..341 100 <- Minus
3L 17621310..17621498 1..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:16:43 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17613222..17613457 739..974 99 <- Minus
arm_3L 17613519..17613749 508..738 100 <- Minus
arm_3L 17613829..17613994 342..507 100 <- Minus
arm_3L 17614201..17614352 190..341 100 <- Minus
arm_3L 17614410..17614598 1..189 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:20:00 Download gff for RE24819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17614201..17614352 190..341 100 <- Minus
3L 17614410..17614598 1..189 100   Minus
3L 17613222..17613457 739..974 99 <- Minus
3L 17613519..17613749 508..738 100 <- Minus
3L 17613829..17613994 342..507 100 <- Minus

RE24819.pep Sequence

Translation from 120 to 800

> RE24819.pep
MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS
KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK
DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG
RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD
SIVPGKSTIETDEFGLPKIPTSLKTT*

RE24819.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23900-PA 226 GF23900-PA 1..226 1..226 1064 93.8 Plus
Dana\GF12950-PA 226 GF12950-PA 3..191 4..194 149 27.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15798-PA 226 GG15798-PA 1..226 1..226 1174 99.6 Plus
Dere\GG10579-PA 226 GG10579-PA 3..191 4..194 150 27.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15350-PA 226 GH15350-PA 1..226 1..226 1105 92.5 Plus
Dgri\GH19872-PA 228 GH19872-PA 3..191 4..194 155 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-PB 226 CG6259-PB 1..226 1..226 1144 100 Plus
Vps60-PA 226 CG6259-PA 1..226 1..226 1144 100 Plus
shrb-PA 226 CG8055-PA 4..193 5..196 191 26.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12953-PA 226 GI12953-PA 1..226 1..226 1054 92.9 Plus
Dmoj\GI19821-PA 227 GI19821-PA 3..191 4..194 154 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25031-PA 208 GL25031-PA 1..208 1..226 896 83.2 Plus
Dper\GL17464-PA 231 GL17464-PA 3..170 4..173 151 28.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19474-PA 228 GA19474-PA 1..228 1..226 1055 93.9 Plus
Dpse\GA20793-PA 231 GA20793-PA 3..170 4..173 151 28.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24320-PA 304 GM24320-PA 102..304 24..226 1034 99.5 Plus
Dsec\GM20627-PA 226 GM20627-PA 3..191 4..194 155 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12393-PA 226 GD12393-PA 1..226 1..226 1174 99.6 Plus
Dsim\GD10100-PA 226 GD10100-PA 3..191 4..194 155 28 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13097-PA 226 GJ13097-PA 1..226 1..226 1062 94.2 Plus
Dvir\GJ18577-PA 228 GJ18577-PA 3..191 4..194 155 27.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10800-PA 227 GK10800-PA 1..227 1..226 1136 96.5 Plus
Dwil\GK22870-PA 227 GK22870-PA 3..191 4..194 157 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22134-PA 226 GE22134-PA 1..226 1..226 1171 98.7 Plus
Dyak\GE22521-PA 226 GE22521-PA 3..191 4..194 155 28 Plus

RE24819.hyp Sequence

Translation from 120 to 800

> RE24819.hyp
MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMS
KMREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLK
DTQATVAAMKDGVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALG
RTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSREPGAD
SIVPGKSTIETDEFGLPKIPTSLKTT*

RE24819.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
Vps60-PB 226 CG6259-PB 1..226 1..226 1144 100 Plus
Vps60-PA 226 CG6259-PA 1..226 1..226 1144 100 Plus
shrb-PA 226 CG8055-PA 4..193 5..196 191 26.7 Plus