BDGP Sequence Production Resources |
Search the DGRC for RE24848
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 248 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2911-RA |
Protein status: | RE24848.pep: gold |
Sequenced Size: | 991 |
Gene | Date | Evidence |
---|---|---|
CG2911 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2911 | 2004-05-03 | Blastp of sequenced clone |
CG2911 | 2008-04-29 | Release 5.5 accounting |
CG2911 | 2008-08-15 | Release 5.9 accounting |
CG2911 | 2008-12-18 | 5.12 accounting |
991 bp (991 high quality bases) assembled on 2004-05-03
GenBank Submission: BT014647
> RE24848.complete ATTAGAACCTTAGTGTTGGTAAACGCCCTGCTCTTTAATTGCACATTTTT TTTTGTACGGAGAATCAAGAATAAACAAATTGCAAATTTGTTTTAATTAA TTTGTTTTTAAATAAAATCGAAGACGACATTCAAGATTTTTATTATCAGT TGCATAAACTTAGTATTCAGATAAGTGAGTCTCACAAAAACCAGTTACGA GATTAACTTTAATATAACTTGGCTTAATTAGTGATACACATGTTGATCAA AGCTCTTTTGTACTACTACATAAAATATAAACATGCTAAATAGTGAAAAT GTGTCTGGTTTTTAAAAATTAATTGCAAATAAAGTGTTAAAGTGGGATGA CATCTTATAAATCATATGCTATGTGATATGTGATAGTTGACCCTTTAGAC TTAACATGCCCGACTTCTATGAACTCTTGAATGTGCCATCCACGGCCAGT TTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTACAATGTCATCC CGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATCGGAGGCCCAGA ACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGCTGAAAGATCCC ATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCGAAATTCCGGGC GCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAATGCAGCGGATCC AAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCACCTTCAGCTCCA CCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAGGCGAACAAAGG GCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATGCGGCGGTCAGT ATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCGAAGTGATTGTG GAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAAGCCGCAAGTTG TAAATAAAGAAGAAGCGAGGGAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1565..1660 | 80..178 | 119 | 59.6 | Plus |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 4232..4301 | 113..48 | 115 | 67.1 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 99..172 | 158..80 | 113 | 64.6 | Minus |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 728..785 | 117..63 | 110 | 72.4 | Minus |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2633..2718 | 117..23 | 110 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1447777..1448346 | 406..975 | 99 | <- | Minus |
chr3R | 1448406..1448809 | 1..405 | 92 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RB | 1..552 | 406..957 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RB | 1..552 | 406..957 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RA | 1..552 | 406..957 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RB | 1..552 | 406..957 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RA | 1..552 | 406..957 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RA | 1..974 | 1..975 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RA | 1..974 | 1..975 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RA | 1..974 | 1..975 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RA | 1..974 | 1..975 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2911-RA | 1..974 | 1..975 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5622119..5622688 | 406..975 | 99 | <- | Minus |
3R | 5622748..5623151 | 1..405 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5622119..5622688 | 406..975 | 99 | <- | Minus |
3R | 5622748..5623151 | 1..405 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5622119..5622688 | 406..975 | 99 | <- | Minus |
3R | 5622748..5623151 | 1..405 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1447841..1448410 | 406..975 | 99 | <- | Minus |
arm_3R | 1448470..1448873 | 1..405 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5362950..5363519 | 406..975 | 99 | <- | Minus |
3R | 5363579..5363982 | 1..405 | 99 | Minus |
Translation from 405 to 956
> RE24848.hyp MPDFYELLNVPSTASFDEIKCSYKQLILQCHPDKLRQLDDPNPGSEAQNS DFNAINAAWNTLKDPIRRKHYDAELLQSKFRAHSNIYATVVLSEMQRIQV EIEEDDDEAPAPSAPPPCQASESESESEANKGPATMWSYAYDCRCGGQYL FDGPADDDESPEVIVECNECSLVIIVKQAASCK*
Translation from 405 to 956
> RE24848.pep MPDFYELLNVPSTASFDEIKCSYKQLILQCHPDKLRQLDDPNPGSEAQNS DFNAINAAWNTLKDPIRRKHYDAELLQSKFRAHSNIYATVVLSEMQRIQV EIEEDDDEAPAPSAPPPCQASESESESEANKGPATMWSYAYDCRCGGQYL FDGPADDDESPEVIVECNECSLVIIVKQAASCK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18658-PA | 186 | GF18658-PA | 1..183 | 1..180 | 637 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10921-PA | 178 | GG10921-PA | 1..178 | 1..183 | 865 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17525-PA | 185 | GH17525-PA | 5..183 | 3..181 | 432 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2911-PB | 183 | CG2911-PB | 1..183 | 1..183 | 980 | 100 | Plus |
CG2911-PA | 183 | CG2911-PA | 1..183 | 1..183 | 980 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22522-PA | 197 | GI22522-PA | 5..191 | 3..177 | 465 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23023-PA | 187 | GL23023-PA | 1..182 | 1..179 | 562 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15512-PA | 189 | GA15512-PA | 1..184 | 1..179 | 549 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10610-PA | 181 | GM10610-PA | 1..181 | 1..183 | 871 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19598-PA | 183 | GD19598-PA | 1..183 | 1..183 | 953 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10126-PA | 79 | GJ10126-PA | 13..73 | 119..177 | 151 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13366-PA | 99 | GK13366-PA | 32..97 | 122..178 | 194 | 54.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24154-PA | 182 | GE24154-PA | 1..182 | 1..183 | 811 | 90.2 | Plus |