Clone RE24848 Report

Search the DGRC for RE24848

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:248
Well:48
Vector:pFlc-1
Associated Gene/TranscriptCG2911-RA
Protein status:RE24848.pep: gold
Sequenced Size:991

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2911 2003-01-01 Sim4 clustering to Release 3
CG2911 2004-05-03 Blastp of sequenced clone
CG2911 2008-04-29 Release 5.5 accounting
CG2911 2008-08-15 Release 5.9 accounting
CG2911 2008-12-18 5.12 accounting

Clone Sequence Records

RE24848.complete Sequence

991 bp (991 high quality bases) assembled on 2004-05-03

GenBank Submission: BT014647

> RE24848.complete
ATTAGAACCTTAGTGTTGGTAAACGCCCTGCTCTTTAATTGCACATTTTT
TTTTGTACGGAGAATCAAGAATAAACAAATTGCAAATTTGTTTTAATTAA
TTTGTTTTTAAATAAAATCGAAGACGACATTCAAGATTTTTATTATCAGT
TGCATAAACTTAGTATTCAGATAAGTGAGTCTCACAAAAACCAGTTACGA
GATTAACTTTAATATAACTTGGCTTAATTAGTGATACACATGTTGATCAA
AGCTCTTTTGTACTACTACATAAAATATAAACATGCTAAATAGTGAAAAT
GTGTCTGGTTTTTAAAAATTAATTGCAAATAAAGTGTTAAAGTGGGATGA
CATCTTATAAATCATATGCTATGTGATATGTGATAGTTGACCCTTTAGAC
TTAACATGCCCGACTTCTATGAACTCTTGAATGTGCCATCCACGGCCAGT
TTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTACAATGTCATCC
CGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATCGGAGGCCCAGA
ACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGCTGAAAGATCCC
ATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCGAAATTCCGGGC
GCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAATGCAGCGGATCC
AAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCACCTTCAGCTCCA
CCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAGGCGAACAAAGG
GCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATGCGGCGGTCAGT
ATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCGAAGTGATTGTG
GAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAAGCCGCAAGTTG
TAAATAAAGAAGAAGCGAGGGAAACAAAAAAAAAAAAAAAA

RE24848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-RA 981 CG2911-RA 1..976 1..977 4830 99.7 Plus
CG2911-RB 891 CG2911-RB 311..886 402..977 2850 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1447777..1448346 975..406 2835 99.8 Minus
chr3R 27901430 chr3R 1448406..1448809 405..1 1975 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5622117..5622688 977..406 2845 99.8 Minus
3R 32079331 3R 5622748..5623151 405..1 1975 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5362948..5363519 977..406 2845 99.8 Minus
3R 31820162 3R 5363579..5363982 405..1 1985 99.7 Minus
Blast to na_te.dros performed 2019-03-16 12:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1565..1660 80..178 119 59.6 Plus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 4232..4301 113..48 115 67.1 Minus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 99..172 158..80 113 64.6 Minus
gypsy9 5349 gypsy9 GYPSY9 5349bp 728..785 117..63 110 72.4 Minus
transib2 2844 transib2 TRANSIB2 2844bp 2633..2718 117..23 110 66.7 Minus

RE24848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:06:20 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1447777..1448346 406..975 99 <- Minus
chr3R 1448406..1448809 1..405 92   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:22 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RB 1..552 406..957 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:15 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RB 1..552 406..957 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:50:35 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 1..552 406..957 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:06 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RB 1..552 406..957 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:47 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 1..552 406..957 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:43:19 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 1..974 1..975 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:15 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 1..974 1..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:50:35 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 1..974 1..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:06 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 1..974 1..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:47 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
CG2911-RA 1..974 1..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:20 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5622119..5622688 406..975 99 <- Minus
3R 5622748..5623151 1..405 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:20 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5622119..5622688 406..975 99 <- Minus
3R 5622748..5623151 1..405 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:20 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5622119..5622688 406..975 99 <- Minus
3R 5622748..5623151 1..405 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:50:35 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1447841..1448410 406..975 99 <- Minus
arm_3R 1448470..1448873 1..405 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:57:23 Download gff for RE24848.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5362950..5363519 406..975 99 <- Minus
3R 5363579..5363982 1..405 99   Minus

RE24848.hyp Sequence

Translation from 405 to 956

> RE24848.hyp
MPDFYELLNVPSTASFDEIKCSYKQLILQCHPDKLRQLDDPNPGSEAQNS
DFNAINAAWNTLKDPIRRKHYDAELLQSKFRAHSNIYATVVLSEMQRIQV
EIEEDDDEAPAPSAPPPCQASESESESEANKGPATMWSYAYDCRCGGQYL
FDGPADDDESPEVIVECNECSLVIIVKQAASCK*

RE24848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-PB 183 CG2911-PB 1..183 1..183 980 100 Plus
CG2911-PA 183 CG2911-PA 1..183 1..183 980 100 Plus

RE24848.pep Sequence

Translation from 405 to 956

> RE24848.pep
MPDFYELLNVPSTASFDEIKCSYKQLILQCHPDKLRQLDDPNPGSEAQNS
DFNAINAAWNTLKDPIRRKHYDAELLQSKFRAHSNIYATVVLSEMQRIQV
EIEEDDDEAPAPSAPPPCQASESESESEANKGPATMWSYAYDCRCGGQYL
FDGPADDDESPEVIVECNECSLVIIVKQAASCK*

RE24848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18658-PA 186 GF18658-PA 1..183 1..180 637 67.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10921-PA 178 GG10921-PA 1..178 1..183 865 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17525-PA 185 GH17525-PA 5..183 3..181 432 46.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2911-PB 183 CG2911-PB 1..183 1..183 980 100 Plus
CG2911-PA 183 CG2911-PA 1..183 1..183 980 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22522-PA 197 GI22522-PA 5..191 3..177 465 53.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23023-PA 187 GL23023-PA 1..182 1..179 562 60.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15512-PA 189 GA15512-PA 1..184 1..179 549 60.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10610-PA 181 GM10610-PA 1..181 1..183 871 94 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19598-PA 183 GD19598-PA 1..183 1..183 953 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10126-PA 79 GJ10126-PA 13..73 119..177 151 49.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13366-PA 99 GK13366-PA 32..97 122..178 194 54.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24154-PA 182 GE24154-PA 1..182 1..183 811 90.2 Plus