Clone RE24941 Report

Search the DGRC for RE24941

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:249
Well:41
Vector:pFlc-1
Associated Gene/TranscriptCyp304a1-RA
Protein status:RE24941.pep: gold
Preliminary Size:1535
Sequenced Size:1729

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7241 2002-01-01 Sim4 clustering to Release 2
CG7241 2002-04-22 Blastp of sequenced clone
CG7241 2003-01-01 Sim4 clustering to Release 3
Cyp304a1 2008-04-29 Release 5.5 accounting
Cyp304a1 2008-08-15 Release 5.9 accounting
Cyp304a1 2008-12-18 5.12 accounting

Clone Sequence Records

RE24941.complete Sequence

1729 bp (1729 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113430

> RE24941.complete
GATTCAGTTGTTGTCCGGAATCCACGATGATCACGGAAACTCTCCTGACG
ATCTGCGCGGCGGTGTTCCTCTGCCTTTCGTATCGATATGCAGTGGGTCG
ACCCTCCGGTTTTCCACCCGGTCCTCCAAAGATTCCGCTTTTCGGCAGCT
ACCTCTTCATGTTGATCATCAACTTTAAGTATCTGCACAAGGCGGCTCTG
ACCCTCAGTCGGTGGTACAAGTCGGATATCATTGGACTGCATGTGGGTCC
TTTTCCGGTGGCCGTTGTCCACAGTGCGGATGGAGTGCGCGAGATCCTCA
ATAATCAGGTGTTCGATGGACGGCCGCAGCTTTTCGTGGCCGCCATGCGC
GATCCCGGCCAAGATGTGCGAGGGATCTTTTTCCAGGATGGCCCCCTGTG
GAAGGAGCAACGTCGCTTCATCCTGCGCTACTTAAGAGACTTTGGTTTCG
GACGACGATTCGACCAACTGGAGCTGGTCATCCAGGAGCAGTTGAACGAC
ATGCTGGATCTGATCCGCAACGGTCCAAAGTATCCGCATGAGCACGAGAT
GGTGAAATCCGGAGGATATCGCGTGCTTCTGCCGCTGCTCTTTAATCCCT
TCTCGGCCAACGCTCACTTTTACATTGTCTACAATGAGTGCCTGAGTCGC
GAGGAAATGGGCAAATTGGTGAAGCTCTGCCAGATGGGCATACAGTTCCA
GCGGAATGCGGACGACTACGGCAAAATGTTGAGCATTATACCGTGGATTC
GGCACATTTGGCCCGAATGGAGTGGCTACAACAAGCTAAACGAGTCCAAC
CTATTCGTGCGGCAGTTCTTTGCCGACTTTGTGGATAAGTATTTGGACAG
CTACGAAGAGGGTGTGGAGCGCAACTTCATGGATGTCTACATAGCTGAAA
TGCGCCGAGGTCCGGGCTACGGTTTCAATCGGGATCAATTGATCATGGGC
CTGGTGGACTTCTCCTTTCCGGCCTTCACTGCCATCGGAGTGCAGCTATC
GCTACTCGTCCAGTATCTCATGCTATATCCGGCAGTTCTGCGGCGGGTTC
AGAACGAGATCGACGAGGTGGTGGGATGCGGACGATTGCCCAACCTGGAG
GATCGCAAGAACTTGCCCTTCACGGAGGCCACCATTCGCGAAGGTCTGCG
CATCGAGACGCTGGTTCCCTCGGATGTCCCGCACAAGGCGCTGGAGGACA
CCGAATTGCTGGGCTACCGGATACCCAAGGACACCATTGTCGTGCCCAGC
CTGTATGCCTTCCACTCGGACGCCCGTATTTGGTCGGATCCGGAGCAGTT
CCGGCCGGAGAGATTCCTGGACGCGGATGGCAAGCTCTGCCTGAAACTGG
ATGTCTCGCTGCCCTTTGGAGCGGGAAAACGGCTCTGTGCCGGCGAGACA
TTTGCGCGCAACATGCTCTTCCTGGTGACAGCGACCATGTGCCAGCACTT
TGACTTCGTCCTGGGCCCCAATGATCGGTTGCCCGATCTCTCCCAGAACC
TCAATGGACTGATTATTTCGCCACCAGATTTCTGGCTGCAACTACAGGAT
CGGCATTGAAAGTAGCCAAGATATTAGAGTTATCTATTTTTAAGACAAAG
TAATTTTACTGATTACGTTAGCTAGTTTGCTTGGATATTTTTTGAGGAAT
TTTATTCCGTCACATTTCAAAAATATTCTAGAATTGCCCAATACTATTAT
GTGATGCCCCCCAAAAAAAAAAAAAAAAA

RE24941.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-RA 2025 Cyp304a1-RA 264..1977 1..1714 8525 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8789756..8790615 371..1230 4240 99.5 Plus
chr3R 27901430 chr3R 8790679..8791158 1228..1707 2370 99.6 Plus
chr3R 27901430 chr3R 8789215..8789468 120..373 1255 99.6 Plus
chr3R 27901430 chr3R 8789035..8789156 1..122 595 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12964518..12965377 371..1230 4300 100 Plus
3R 32079331 3R 12965441..12965927 1228..1714 2405 99.6 Plus
3R 32079331 3R 12963977..12964230 120..373 1270 100 Plus
3R 32079331 3R 12963797..12963918 1..122 595 99.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12705349..12706208 371..1230 4300 100 Plus
3R 31820162 3R 12706272..12706758 1228..1714 2405 99.5 Plus
3R 31820162 3R 12704808..12705061 120..373 1270 100 Plus
3R 31820162 3R 12704628..12704749 1..122 595 99.1 Plus
Blast to na_te.dros performed on 2019-03-15 20:13:18 has no hits.

RE24941.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:23 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8789035..8789154 1..120 99 -> Plus
chr3R 8789216..8789467 121..372 99 -> Plus
chr3R 8789758..8790614 373..1229 99 -> Plus
chr3R 8790681..8791163 1230..1712 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:29 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1533 27..1559 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:58:03 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1533 27..1559 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:53 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1533 27..1559 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:26 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1533 27..1559 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:07 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1533 27..1559 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:38:09 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1712 1..1712 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:03 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1712 1..1712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:53 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 7..1716 1..1710 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:26 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 1..1712 1..1712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:07 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp304a1-RA 7..1716 1..1710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:23 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12963797..12963916 1..120 99 -> Plus
3R 12963978..12964229 121..372 100 -> Plus
3R 12964520..12965376 373..1229 100 -> Plus
3R 12965443..12965925 1230..1712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:23 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12963797..12963916 1..120 99 -> Plus
3R 12963978..12964229 121..372 100 -> Plus
3R 12964520..12965376 373..1229 100 -> Plus
3R 12965443..12965925 1230..1712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:23 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12963797..12963916 1..120 99 -> Plus
3R 12963978..12964229 121..372 100 -> Plus
3R 12964520..12965376 373..1229 100 -> Plus
3R 12965443..12965925 1230..1712 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:53 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8789519..8789638 1..120 99 -> Plus
arm_3R 8789700..8789951 121..372 100 -> Plus
arm_3R 8790242..8791098 373..1229 100 -> Plus
arm_3R 8791165..8791647 1230..1712 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:21 Download gff for RE24941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12704809..12705060 121..372 100 -> Plus
3R 12705351..12706207 373..1229 100 -> Plus
3R 12706274..12706756 1230..1712 99   Plus
3R 12704628..12704747 1..120 99 -> Plus

RE24941.hyp Sequence

Translation from 2 to 1558

> RE24941.hyp
FSCCPESTMITETLLTICAAVFLCLSYRYAVGRPSGFPPGPPKIPLFGSY
LFMLIINFKYLHKAALTLSRWYKSDIIGLHVGPFPVAVVHSADGVREILN
NQVFDGRPQLFVAAMRDPGQDVRGIFFQDGPLWKEQRRFILRYLRDFGFG
RRFDQLELVIQEQLNDMLDLIRNGPKYPHEHEMVKSGGYRVLLPLLFNPF
SANAHFYIVYNECLSREEMGKLVKLCQMGIQFQRNADDYGKMLSIIPWIR
HIWPEWSGYNKLNESNLFVRQFFADFVDKYLDSYEEGVERNFMDVYIAEM
RRGPGYGFNRDQLIMGLVDFSFPAFTAIGVQLSLLVQYLMLYPAVLRRVQ
NEIDEVVGCGRLPNLEDRKNLPFTEATIREGLRIETLVPSDVPHKALEDT
ELLGYRIPKDTIVVPSLYAFHSDARIWSDPEQFRPERFLDADGKLCLKLD
VSLPFGAGKRLCAGETFARNMLFLVTATMCQHFDFVLGPNDRLPDLSQNL
NGLIISPPDFWLQLQDRH*

RE24941.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-PA 510 CG7241-PA 1..510 9..518 2716 100 Plus
Cyp305a1-PA 504 CG8733-PA 4..503 14..517 543 29.4 Plus
Cyp18a1-PB 538 CG6816-PB 54..520 38..517 496 28.9 Plus
Cyp18a1-PA 538 CG6816-PA 54..520 38..517 496 28.9 Plus
Cyp303a1-PB 503 CG4163-PB 4..475 13..489 490 30.7 Plus

RE24941.pep Sequence

Translation from 26 to 1558

> RE24941.pep
MITETLLTICAAVFLCLSYRYAVGRPSGFPPGPPKIPLFGSYLFMLIINF
KYLHKAALTLSRWYKSDIIGLHVGPFPVAVVHSADGVREILNNQVFDGRP
QLFVAAMRDPGQDVRGIFFQDGPLWKEQRRFILRYLRDFGFGRRFDQLEL
VIQEQLNDMLDLIRNGPKYPHEHEMVKSGGYRVLLPLLFNPFSANAHFYI
VYNECLSREEMGKLVKLCQMGIQFQRNADDYGKMLSIIPWIRHIWPEWSG
YNKLNESNLFVRQFFADFVDKYLDSYEEGVERNFMDVYIAEMRRGPGYGF
NRDQLIMGLVDFSFPAFTAIGVQLSLLVQYLMLYPAVLRRVQNEIDEVVG
CGRLPNLEDRKNLPFTEATIREGLRIETLVPSDVPHKALEDTELLGYRIP
KDTIVVPSLYAFHSDARIWSDPEQFRPERFLDADGKLCLKLDVSLPFGAG
KRLCAGETFARNMLFLVTATMCQHFDFVLGPNDRLPDLSQNLNGLIISPP
DFWLQLQDRH*

RE24941.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16922-PA 510 GF16922-PA 1..510 1..510 2345 83.5 Plus
Dana\GF10847-PA 502 GF10847-PA 7..501 7..509 532 28.5 Plus
Dana\GF22398-PA 540 GF22398-PA 53..520 29..509 504 29 Plus
Dana\GF14577-PA 504 GF14577-PA 1..475 1..481 492 30 Plus
Dana\GF10456-PA 543 GF10456-PA 56..510 31..476 277 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19280-PA 510 GG19280-PA 1..510 1..510 2557 92.7 Plus
Dere\GG13370-PA 504 GG13370-PA 3..503 5..509 562 29.8 Plus
Dere\GG25199-PA 503 GG25199-PA 20..475 22..481 502 31.4 Plus
Dere\GG18098-PA 538 GG18098-PA 53..520 29..509 500 29.2 Plus
Dere\GG14124-PA 538 GG14124-PA 56..525 31..504 271 26.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18361-PA 597 GH18361-PA 116..596 32..510 2031 76.5 Plus
Dgri\GH16912-PA 512 GH16912-PA 1..511 1..509 559 30.3 Plus
Dgri\GH10311-PA 499 GH10311-PA 19..472 22..482 515 30 Plus
Dgri\GH12201-PA 537 GH12201-PA 52..519 29..509 490 28.8 Plus
Dgri\GH18361-PA 597 GH18361-PA 1..116 1..116 444 68.1 Plus
Dgri\GH12529-PA 529 GH12529-PA 49..512 30..505 260 23 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp304a1-PA 510 CG7241-PA 1..510 1..510 2716 100 Plus
Cyp305a1-PA 504 CG8733-PA 4..503 6..509 543 29.4 Plus
Cyp18a1-PB 538 CG6816-PB 54..520 30..509 496 28.9 Plus
Cyp18a1-PA 538 CG6816-PA 54..520 30..509 496 28.9 Plus
Cyp303a1-PB 503 CG4163-PB 4..475 5..481 490 30.7 Plus
Cyp303a1-PA 503 CG4163-PA 4..475 5..481 490 30.7 Plus
phm-PB 574 CG6578-PB 49..554 30..505 272 24.3 Plus
phm-PA 574 CG6578-PA 49..554 30..505 272 24.3 Plus
spok-PB 553 CG41624-PB 52..522 31..476 252 24.8 Plus
spo-PC 543 CG10594-PC 56..507 31..476 247 25.5 Plus
spo-PA 543 CG10594-PA 56..507 31..476 247 25.5 Plus
Cyp28c1-PB 505 CG1895-PB 268..499 281..509 198 28.3 Plus
Cyp28c1-PA 505 CG1895-PA 268..499 281..509 198 28.3 Plus
Cyp311a1-PB 483 CG1488-PB 259..457 279..481 186 24.6 Plus
Cyp28d1-PA 502 CG10833-PA 231..476 241..484 183 26.2 Plus
Cyp9c1-PA 522 CG3616-PA 304..519 300..509 166 28 Plus
Cyp309a2-PA 538 CG18559-PA 328..515 303..486 163 26.5 Plus
Cyp6a16-PC 500 CG7249-PC 241..486 261..501 160 26.9 Plus
Cyp6a16-PB 500 CG7249-PB 241..486 261..501 160 26.9 Plus
Cyp4e3-PA 526 CG4105-PA 231..489 246..501 160 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23351-PA 511 GI23351-PA 10..511 10..509 2059 72.7 Plus
Dmoj\GI23350-PA 512 GI23350-PA 1..511 1..509 1959 68.7 Plus
Dmoj\GI13668-PA 508 GI13668-PA 7..508 6..510 549 30.4 Plus
Dmoj\GI10931-PA 537 GI10931-PA 52..519 29..509 500 29.6 Plus
Dmoj\GI17072-PA 499 GI17072-PA 22..473 25..482 490 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24370-PA 512 GL24370-PA 1..509 1..509 2245 78.6 Plus
Dper\GL15679-PA 506 GL15679-PA 2..505 4..509 536 29.2 Plus
Dper\GL16299-PA 507 GL16299-PA 20..476 22..482 489 29.7 Plus
Dper\GL24372-PA 98 GL24372-PA 13..96 422..510 307 67.4 Plus
Dper\GL26991-PA 578 GL26991-PA 376..538 321..482 241 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26591-PA 512 GA26591-PA 1..509 1..509 2258 79 Plus
Dpse\GA21289-PA 506 GA21289-PA 2..505 4..509 539 29.2 Plus
Dpse\GA19881-PA 539 GA19881-PA 54..521 29..509 496 28.8 Plus
Dpse\GA17998-PA 507 GA17998-PA 20..476 22..482 491 29.7 Plus
Dpse\GA10424-PA 532 GA10424-PA 51..505 31..480 242 26.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24068-PA 510 GM24068-PA 1..510 1..510 2649 96.5 Plus
Dsec\GM16187-PA 504 GM16187-PA 3..503 5..509 559 29.2 Plus
Dsec\GM22791-PA 538 GM22791-PA 53..520 29..509 505 29.8 Plus
Dsec\GM18663-PA 503 GM18663-PA 20..475 22..481 495 30.9 Plus
Dsec\GM13910-PA 450 GM13910-PA 202..415 281..477 223 30.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18865-PA 510 GD18865-PA 1..510 1..510 2651 96.5 Plus
Dsim\GD12248-PA 504 GD12248-PA 3..503 5..509 560 29.2 Plus
Dsim\GD24470-PA 538 GD24470-PA 53..520 29..509 503 29.6 Plus
Dsim\GD24048-PA 503 GD24048-PA 20..475 22..481 498 31.1 Plus
Dsim\GD24859-PA 331 GD24859-PA 115..305 303..499 225 34.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22536-PA 511 GJ22536-PA 1..511 1..509 2133 75 Plus
Dvir\GJ22535-PA 511 GJ22535-PA 1..511 1..509 2133 75 Plus
Dvir\GJ10344-PA 511 GJ10344-PA 1..511 1..509 2133 75 Plus
Dvir\GJ14004-PA 508 GJ14004-PA 14..507 14..509 530 29.4 Plus
Dvir\GJ10597-PA 499 GJ10597-PA 22..472 25..482 507 30.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12215-PA 587 GK12215-PA 78..586 2..510 2157 74.9 Plus
Dwil\GK16701-PA 510 GK16701-PA 14..489 14..488 503 28.5 Plus
Dwil\GK24949-PA 542 GK24949-PA 56..524 29..509 497 29.2 Plus
Dwil\GK24287-PA 508 GK24287-PA 14..482 13..487 466 28.4 Plus
Dwil\GK10191-PA 513 GK10191-PA 45..478 30..479 374 24.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26226-PA 510 GE26226-PA 1..510 1..510 2561 92.9 Plus
Dyak\GE22764-PA 504 GE22764-PA 3..503 5..509 544 29.5 Plus
Dyak\GE22463-PA 504 GE22463-PA 3..503 5..509 544 29.5 Plus
Dyak\GE21420-PA 504 GE21420-PA 20..475 22..481 504 31.4 Plus
Dyak\GE15501-PA 538 GE15501-PA 53..520 29..509 502 29.6 Plus