Clone RE25030 Report

Search the DGRC for RE25030

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:250
Well:30
Vector:pFlc-1
Associated Gene/Transcriptoaf-RA
Protein status:RE25030.pep: gold
Preliminary Size:1462
Sequenced Size:2853

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9884 2002-01-01 Sim4 clustering to Release 2
CG9884 2003-01-01 Sim4 clustering to Release 3
CG9884 2003-08-05 Blastp of sequenced clone
oaf 2008-04-29 Release 5.5 accounting
oaf 2008-08-15 Release 5.9 accounting
oaf 2008-12-18 5.12 accounting

Clone Sequence Records

RE25030.complete Sequence

2853 bp (2853 high quality bases) assembled on 2003-08-05

GenBank Submission: BT011098

> RE25030.complete
AGTTATTTTTCGTTCGTCGACGCGAGTGGTTCGTTGTGCTTTCTTGTGAT
TTTATTTAAAAGTTGTCGGATCGCAATGATCTTAAAGGAGGAGCACCCAC
ACCAGAGCATCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGC
TGGCGAATGGCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCA
CGGCAATTGCTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACA
GTCGCGCGTTTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGAC
GCATTCGCCCACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGA
GGTGATCCAGGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGC
TGGAGTTTCAGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTT
CGCAATGAGGTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCG
TGGCCAGAGCCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGG
GCGACTTCATCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCG
CACACCATCCGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCAT
GAGCAGCTGGGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGC
AGGGACTCTGCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGAC
CTTAAAGCTTGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGC
CGCCACGGAAAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGA
GCAGCCTGTGGGCGCCCTGCCTGTGCAACCTGGAGACCTGCATCGGCTGG
TATCCCTGCGGGCTCAAGTACTGCAAGGGCAAGGGAGTCGCCGGAGCGGA
CTCGTCGGGCGCCCAGCAGCAGGCACAGCCGACGAATTATCGCTGCGGCA
TCAAGACCTGCCGCAAGTGCACACAGTTCACCTATTATGTGCGGCAGAAA
CAACAGTGCCTCTGGGATGAATGACGACGCGGCGAGCTGCAGCTGATGCA
GATGCGCTGCGCGAGGCGGCGGAATGGTAGCGAGTTTGGGGATGATGCCA
GTGCCACCTGCCCGGGTGGCGAAACAAGAGCAGCAACCACGACCGCGACA
ATAACTGGCGGGGGAGCTGGGGGAAGTGGGAAGGATACAACGGCAGCGAC
AACAACGACAACCAACAAATTAAGCCAACTGCTTTTGTTGGTCCAGCAGC
AGATGCCTTTTGCTCTGTGGAGTTTTCCGGTCCATCACATTTCCCAGTCC
CATCACCAGTCCCAGTCCCAACATAAGCCCAGCCGGCAGCAGAAGCAGCA
TCAGCATCATTCTCAGGTTGCCCCCACTTCGCATCACCAGTCATCATCAT
CAACACCACCAACACCGTCAACATCATCATCACCGCCATCATCATCATCG
TCGTCGTCGTCGTCCGCAATGGCCGCCATCGTTGCGTGATAATGAACGCT
TGAAAAACCCAACTTACACAATCCACTACACTACACATCCAGGAAAAAAA
CGAATGCTGACACTTTTTCCGCTCACGATTCAAGACGATTCTGGACGCGG
ACATTCGAATGCAAGCCACTGGGTGAAGGTTATACTACAGCAAAAAAGGA
GTAAAACGAAATAAATGTAAAAAAGTGCTTCTGTATACTATGTATATATA
TGTATATTTAACGATGATTAGCTTTTAGCCAGCTTACGTTTTACGCTTAT
GCCGGATTTAAGTTTAGACCTAGATTAGGTGTCCTTATTTAATTAAATCC
TAAGAGAGCTCGCAGAATTAAGAGTTAAGCACTTCTGAGACGTACTCCTT
TGCCATTTAATCCTTTCCTACTACAGTGTGATCTTTTATCAAATCATTTA
CATTTCCTATGACATAGCTTTAAAACCTAAAACTTATTGATTTAATTATA
GTGCAGCACCTTTCTTGTAATTATCTATCACTCTTTAGATCTTTCTTAAC
TTTTTCCAAAGTATTTGAGAATTTATAGCCATCTTCCTTCCAGCTTTCTT
GCCTGCTCACCTTTCAAGTCCATTTTCAATTTGTTTACTTTGCCCGTTCA
CTTCATACTTTTCCATGTACATTGTGCGCAGCAATTTCGTTTCAATTACC
CTTTTAGAGCGCTTTATGTTTCCTTTGTTTGCCTTTATCTCCACTTCACT
TACCTTAACTGAAGCCTGATTAGATGTATTAAGATTGTTGGACACAATAT
CGCGTTCCACGCCCTCTCCACCCGTGTTGCGTTGAGCTCAAGAAGATTAA
ATAGGAATAGAAGTATAAATAAATTAAATGTGGCCTTAGCATATTTTACG
AGCGGTAGAAAAAGTACATTCATTGAACTAAGGAATATGTATGTATGTCA
GGCGTTGGCAAAACTCGGAATTAATTGTGCTCATAATAGTTGTAATAGAA
AAACCACAAGAATAAGATATATGGCCATTTGGGGAATGGTGAATGTAGAT
GAAGAATTCTACTAACCAAAACGAATGCCGCATAAAAAAAAATAAAAAGC
TTTTGCATTTTACCACTCGAAAATGGCTGTTTGAGATACCCACTCCCGTT
TTTTTTCCTACTAATCTTTCCCTTCAAATCTAATCCTTATAAACTAGACC
GTAAACACGCCTGCCTTTTTGCCTTTGACTTGTAACCTTTTCCACTTTGT
ATTCGAAACAAATGAAATACCTTAACGATGGCAAAACCTTAAGCAAATTG
ATTGATACCAATAATAAACAATACCAAGAACAAAAAGAAAAAAAAAAAAA
AAA

RE25030.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
oaf.d 3358 oaf.d 130..2962 1..2833 14135 99.9 Plus
oaf-RA 3358 oaf-RA 130..2962 1..2833 14135 99.9 Plus
oaf-RB 2865 oaf-RB 130..2865 1..2736 13650 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2496144..2498200 773..2833 9680 98.3 Plus
chr2L 23010047 chr2L 2492709..2493051 1..343 1715 100 Plus
chr2L 23010047 chr2L 2495327..2495646 457..776 1570 99.4 Plus
chr2L 23010047 chr2L 2495128..2495245 340..457 590 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2496396..2498456 773..2833 10275 99.9 Plus
2L 23513712 2L 2492955..2493297 1..343 1715 100 Plus
2L 23513712 2L 2495570..2495889 457..776 1600 100 Plus
2L 23513712 2L 2495371..2495488 340..457 590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2496396..2498456 773..2833 10275 99.9 Plus
2L 23513712 2L 2492955..2493297 1..343 1715 100 Plus
2L 23513712 2L 2495570..2495889 457..776 1600 100 Plus
2L 23513712 2L 2495371..2495488 340..457 590 100 Plus
Blast to na_te.dros performed 2019-03-16 12:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2489 1351..1519 212 62.4 Plus
roo 9092 roo DM_ROO 9092bp 1052..1163 1376..1484 164 65.5 Plus
roo 9092 roo DM_ROO 9092bp 1042..1173 1339..1473 143 62 Plus
F-element 4708 F-element F 4708bp 48..160 2183..2069 118 60.3 Minus
roo 9092 roo DM_ROO 9092bp 1135..1194 1237..1295 117 68.3 Plus

RE25030.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:06:27 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2492709..2493050 1..342 100 -> Plus
chr2L 2495131..2495244 343..456 100 -> Plus
chr2L 2495327..2495645 457..775 99 -> Plus
chr2L 2496147..2497392 776..2012 98 == Plus
chr2L 2497393..2498203 2028..2837 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:32 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..1464 76..1539 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:39 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..1464 76..1539 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:51:14 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..1464 76..1539 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:46 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..1464 76..1539 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:58 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..1464 76..1539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:22 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..2836 1..2837 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:39 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..2836 1..2837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:51:14 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RA 1..2836 1..2837 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:46 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RD 1..2836 1..2837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:58 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RA 1..2836 1..2837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:27 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2492955..2493296 1..342 100 -> Plus
2L 2495374..2495487 343..456 100 -> Plus
2L 2495570..2495888 457..775 100 -> Plus
2L 2496399..2498459 776..2837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:27 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2492955..2493296 1..342 100 -> Plus
2L 2495374..2495487 343..456 100 -> Plus
2L 2495570..2495888 457..775 100 -> Plus
2L 2496399..2498459 776..2837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:27 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2492955..2493296 1..342 100 -> Plus
2L 2495374..2495487 343..456 100 -> Plus
2L 2495570..2495888 457..775 100 -> Plus
2L 2496399..2498459 776..2837 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:51:14 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2492955..2493296 1..342 100 -> Plus
arm_2L 2495374..2495487 343..456 100 -> Plus
arm_2L 2495570..2495888 457..775 100 -> Plus
arm_2L 2496399..2498459 776..2837 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:57 Download gff for RE25030.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2495570..2495888 457..775 100 -> Plus
2L 2492955..2493296 1..342 100 -> Plus
2L 2495374..2495487 343..456 100 -> Plus
2L 2496399..2498459 776..2837 99   Plus

RE25030.hyp Sequence

Translation from 0 to 1073

> RE25030.hyp
SYFSFVDASGSLCFLVILFKSCRIAMILKEEHPHQSIETAANAARQAQVR
WRMAHLKALSRTRTPAHGNCCGRVVSKNHFFKHSRAFLWFLLCNLVMNAD
AFAHSQLLINVQNQGGEVIQESITSNIGEDLITLEFQKTDGTLITQVIDF
RNEVQILKALVLGEEERGQSQYQVMCFATKFNKGDFISSAAMAKLRQKNP
HTIRTPEEDKGRETFTMSSWVQLNRSLPITRHLQGLCAEAMDATYVRDVD
LKAWAELPGSSISSLEAATEKFPDTLSTRCNEVSSLWAPCLCNLETCIGW
YPCGLKYCKGKGVAGADSSGAQQQAQPTNYRCGIKTCRKCTQFTYYVRQK
QQCLWDE*

RE25030.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-PC 332 CG9884-PC 1..332 26..357 1770 100 Plus
oaf-PB 332 CG9884-PB 1..332 26..357 1770 100 Plus
oaf-PA 332 CG9884-PA 1..332 26..357 1770 100 Plus
oaf-PD 487 CG9884-PD 1..332 26..357 1770 100 Plus

RE25030.pep Sequence

Translation from 75 to 1073

> RE25030.pep
MILKEEHPHQSIETAANAARQAQVRWRMAHLKALSRTRTPAHGNCCGRVV
SKNHFFKHSRAFLWFLLCNLVMNADAFAHSQLLINVQNQGGEVIQESITS
NIGEDLITLEFQKTDGTLITQVIDFRNEVQILKALVLGEEERGQSQYQVM
CFATKFNKGDFISSAAMAKLRQKNPHTIRTPEEDKGRETFTMSSWVQLNR
SLPITRHLQGLCAEAMDATYVRDVDLKAWAELPGSSISSLEAATEKFPDT
LSTRCNEVSSLWAPCLCNLETCIGWYPCGLKYCKGKGVAGADSSGAQQQA
QPTNYRCGIKTCRKCTQFTYYVRQKQQCLWDE*

RE25030.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20587-PA 345 GF20587-PA 1..345 1..332 1475 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24861-PA 331 GG24861-PA 1..331 1..332 1650 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10264-PA 257 GH10264-PA 10..257 90..332 1168 89.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-PD 487 CG9884-PD 1..332 1..332 1770 100 Plus
oaf-PC 332 CG9884-PC 1..332 1..332 1770 100 Plus
oaf-PB 332 CG9884-PB 1..332 1..332 1770 100 Plus
oaf-PA 332 CG9884-PA 1..332 1..332 1770 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15594-PA 304 GI15594-PA 1..304 28..332 1345 84.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26562-PA 333 GL26562-PA 1..333 1..332 1446 82.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22098-PA 336 GA22098-PA 1..336 1..332 1424 82.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18344-PA 332 GM18344-PA 1..332 1..332 1760 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23159-PA 332 GD23159-PA 1..332 1..332 1764 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\oaf-PA 322 GJ17294-PA 17..322 25..332 1346 84.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23944-PA 317 GK23944-PA 24..317 46..332 1330 86.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18160-PA 331 GE18160-PA 1..331 1..332 1657 94.9 Plus