BDGP Sequence Production Resources |
Search the DGRC for RE25030
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 250 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | oaf-RA |
Protein status: | RE25030.pep: gold |
Preliminary Size: | 1462 |
Sequenced Size: | 2853 |
Gene | Date | Evidence |
---|---|---|
CG9884 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9884 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9884 | 2003-08-05 | Blastp of sequenced clone |
oaf | 2008-04-29 | Release 5.5 accounting |
oaf | 2008-08-15 | Release 5.9 accounting |
oaf | 2008-12-18 | 5.12 accounting |
2853 bp (2853 high quality bases) assembled on 2003-08-05
GenBank Submission: BT011098
> RE25030.complete AGTTATTTTTCGTTCGTCGACGCGAGTGGTTCGTTGTGCTTTCTTGTGAT TTTATTTAAAAGTTGTCGGATCGCAATGATCTTAAAGGAGGAGCACCCAC ACCAGAGCATCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGC TGGCGAATGGCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCA CGGCAATTGCTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACA GTCGCGCGTTTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGAC GCATTCGCCCACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGA GGTGATCCAGGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGC TGGAGTTTCAGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTT CGCAATGAGGTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCG TGGCCAGAGCCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGG GCGACTTCATCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCG CACACCATCCGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCAT GAGCAGCTGGGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGC AGGGACTCTGCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGAC CTTAAAGCTTGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGC CGCCACGGAAAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGA GCAGCCTGTGGGCGCCCTGCCTGTGCAACCTGGAGACCTGCATCGGCTGG TATCCCTGCGGGCTCAAGTACTGCAAGGGCAAGGGAGTCGCCGGAGCGGA CTCGTCGGGCGCCCAGCAGCAGGCACAGCCGACGAATTATCGCTGCGGCA TCAAGACCTGCCGCAAGTGCACACAGTTCACCTATTATGTGCGGCAGAAA CAACAGTGCCTCTGGGATGAATGACGACGCGGCGAGCTGCAGCTGATGCA GATGCGCTGCGCGAGGCGGCGGAATGGTAGCGAGTTTGGGGATGATGCCA GTGCCACCTGCCCGGGTGGCGAAACAAGAGCAGCAACCACGACCGCGACA ATAACTGGCGGGGGAGCTGGGGGAAGTGGGAAGGATACAACGGCAGCGAC AACAACGACAACCAACAAATTAAGCCAACTGCTTTTGTTGGTCCAGCAGC AGATGCCTTTTGCTCTGTGGAGTTTTCCGGTCCATCACATTTCCCAGTCC CATCACCAGTCCCAGTCCCAACATAAGCCCAGCCGGCAGCAGAAGCAGCA TCAGCATCATTCTCAGGTTGCCCCCACTTCGCATCACCAGTCATCATCAT CAACACCACCAACACCGTCAACATCATCATCACCGCCATCATCATCATCG TCGTCGTCGTCGTCCGCAATGGCCGCCATCGTTGCGTGATAATGAACGCT TGAAAAACCCAACTTACACAATCCACTACACTACACATCCAGGAAAAAAA CGAATGCTGACACTTTTTCCGCTCACGATTCAAGACGATTCTGGACGCGG ACATTCGAATGCAAGCCACTGGGTGAAGGTTATACTACAGCAAAAAAGGA GTAAAACGAAATAAATGTAAAAAAGTGCTTCTGTATACTATGTATATATA TGTATATTTAACGATGATTAGCTTTTAGCCAGCTTACGTTTTACGCTTAT GCCGGATTTAAGTTTAGACCTAGATTAGGTGTCCTTATTTAATTAAATCC TAAGAGAGCTCGCAGAATTAAGAGTTAAGCACTTCTGAGACGTACTCCTT TGCCATTTAATCCTTTCCTACTACAGTGTGATCTTTTATCAAATCATTTA CATTTCCTATGACATAGCTTTAAAACCTAAAACTTATTGATTTAATTATA GTGCAGCACCTTTCTTGTAATTATCTATCACTCTTTAGATCTTTCTTAAC TTTTTCCAAAGTATTTGAGAATTTATAGCCATCTTCCTTCCAGCTTTCTT GCCTGCTCACCTTTCAAGTCCATTTTCAATTTGTTTACTTTGCCCGTTCA CTTCATACTTTTCCATGTACATTGTGCGCAGCAATTTCGTTTCAATTACC CTTTTAGAGCGCTTTATGTTTCCTTTGTTTGCCTTTATCTCCACTTCACT TACCTTAACTGAAGCCTGATTAGATGTATTAAGATTGTTGGACACAATAT CGCGTTCCACGCCCTCTCCACCCGTGTTGCGTTGAGCTCAAGAAGATTAA ATAGGAATAGAAGTATAAATAAATTAAATGTGGCCTTAGCATATTTTACG AGCGGTAGAAAAAGTACATTCATTGAACTAAGGAATATGTATGTATGTCA GGCGTTGGCAAAACTCGGAATTAATTGTGCTCATAATAGTTGTAATAGAA AAACCACAAGAATAAGATATATGGCCATTTGGGGAATGGTGAATGTAGAT GAAGAATTCTACTAACCAAAACGAATGCCGCATAAAAAAAAATAAAAAGC TTTTGCATTTTACCACTCGAAAATGGCTGTTTGAGATACCCACTCCCGTT TTTTTTCCTACTAATCTTTCCCTTCAAATCTAATCCTTATAAACTAGACC GTAAACACGCCTGCCTTTTTGCCTTTGACTTGTAACCTTTTCCACTTTGT ATTCGAAACAAATGAAATACCTTAACGATGGCAAAACCTTAAGCAAATTG ATTGATACCAATAATAAACAATACCAAGAACAAAAAGAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 2496144..2498200 | 773..2833 | 9680 | 98.3 | Plus |
chr2L | 23010047 | chr2L | 2492709..2493051 | 1..343 | 1715 | 100 | Plus |
chr2L | 23010047 | chr2L | 2495327..2495646 | 457..776 | 1570 | 99.4 | Plus |
chr2L | 23010047 | chr2L | 2495128..2495245 | 340..457 | 590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2496396..2498456 | 773..2833 | 10275 | 99.9 | Plus |
2L | 23513712 | 2L | 2492955..2493297 | 1..343 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 2495570..2495889 | 457..776 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 2495371..2495488 | 340..457 | 590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2496396..2498456 | 773..2833 | 10275 | 99.9 | Plus |
2L | 23513712 | 2L | 2492955..2493297 | 1..343 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 2495570..2495889 | 457..776 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 2495371..2495488 | 340..457 | 590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2489 | 1351..1519 | 212 | 62.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1052..1163 | 1376..1484 | 164 | 65.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1042..1173 | 1339..1473 | 143 | 62 | Plus |
F-element | 4708 | F-element F 4708bp | 48..160 | 2183..2069 | 118 | 60.3 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1135..1194 | 1237..1295 | 117 | 68.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2492709..2493050 | 1..342 | 100 | -> | Plus |
chr2L | 2495131..2495244 | 343..456 | 100 | -> | Plus |
chr2L | 2495327..2495645 | 457..775 | 99 | -> | Plus |
chr2L | 2496147..2497392 | 776..2012 | 98 | == | Plus |
chr2L | 2497393..2498203 | 2028..2837 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..1464 | 76..1539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..1464 | 76..1539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..1464 | 76..1539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..1464 | 76..1539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..1464 | 76..1539 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..2836 | 1..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..2836 | 1..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RA | 1..2836 | 1..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RD | 1..2836 | 1..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
oaf-RA | 1..2836 | 1..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2492955..2493296 | 1..342 | 100 | -> | Plus |
2L | 2495374..2495487 | 343..456 | 100 | -> | Plus |
2L | 2495570..2495888 | 457..775 | 100 | -> | Plus |
2L | 2496399..2498459 | 776..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2492955..2493296 | 1..342 | 100 | -> | Plus |
2L | 2495374..2495487 | 343..456 | 100 | -> | Plus |
2L | 2495570..2495888 | 457..775 | 100 | -> | Plus |
2L | 2496399..2498459 | 776..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2492955..2493296 | 1..342 | 100 | -> | Plus |
2L | 2495374..2495487 | 343..456 | 100 | -> | Plus |
2L | 2495570..2495888 | 457..775 | 100 | -> | Plus |
2L | 2496399..2498459 | 776..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2492955..2493296 | 1..342 | 100 | -> | Plus |
arm_2L | 2495374..2495487 | 343..456 | 100 | -> | Plus |
arm_2L | 2495570..2495888 | 457..775 | 100 | -> | Plus |
arm_2L | 2496399..2498459 | 776..2837 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2495570..2495888 | 457..775 | 100 | -> | Plus |
2L | 2492955..2493296 | 1..342 | 100 | -> | Plus |
2L | 2495374..2495487 | 343..456 | 100 | -> | Plus |
2L | 2496399..2498459 | 776..2837 | 99 | Plus |
Translation from 0 to 1073
> RE25030.hyp SYFSFVDASGSLCFLVILFKSCRIAMILKEEHPHQSIETAANAARQAQVR WRMAHLKALSRTRTPAHGNCCGRVVSKNHFFKHSRAFLWFLLCNLVMNAD AFAHSQLLINVQNQGGEVIQESITSNIGEDLITLEFQKTDGTLITQVIDF RNEVQILKALVLGEEERGQSQYQVMCFATKFNKGDFISSAAMAKLRQKNP HTIRTPEEDKGRETFTMSSWVQLNRSLPITRHLQGLCAEAMDATYVRDVD LKAWAELPGSSISSLEAATEKFPDTLSTRCNEVSSLWAPCLCNLETCIGW YPCGLKYCKGKGVAGADSSGAQQQAQPTNYRCGIKTCRKCTQFTYYVRQK QQCLWDE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
oaf-PC | 332 | CG9884-PC | 1..332 | 26..357 | 1770 | 100 | Plus |
oaf-PB | 332 | CG9884-PB | 1..332 | 26..357 | 1770 | 100 | Plus |
oaf-PA | 332 | CG9884-PA | 1..332 | 26..357 | 1770 | 100 | Plus |
oaf-PD | 487 | CG9884-PD | 1..332 | 26..357 | 1770 | 100 | Plus |
Translation from 75 to 1073
> RE25030.pep MILKEEHPHQSIETAANAARQAQVRWRMAHLKALSRTRTPAHGNCCGRVV SKNHFFKHSRAFLWFLLCNLVMNADAFAHSQLLINVQNQGGEVIQESITS NIGEDLITLEFQKTDGTLITQVIDFRNEVQILKALVLGEEERGQSQYQVM CFATKFNKGDFISSAAMAKLRQKNPHTIRTPEEDKGRETFTMSSWVQLNR SLPITRHLQGLCAEAMDATYVRDVDLKAWAELPGSSISSLEAATEKFPDT LSTRCNEVSSLWAPCLCNLETCIGWYPCGLKYCKGKGVAGADSSGAQQQA QPTNYRCGIKTCRKCTQFTYYVRQKQQCLWDE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20587-PA | 345 | GF20587-PA | 1..345 | 1..332 | 1475 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24861-PA | 331 | GG24861-PA | 1..331 | 1..332 | 1650 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10264-PA | 257 | GH10264-PA | 10..257 | 90..332 | 1168 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
oaf-PD | 487 | CG9884-PD | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PC | 332 | CG9884-PC | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PB | 332 | CG9884-PB | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PA | 332 | CG9884-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15594-PA | 304 | GI15594-PA | 1..304 | 28..332 | 1345 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26562-PA | 333 | GL26562-PA | 1..333 | 1..332 | 1446 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22098-PA | 336 | GA22098-PA | 1..336 | 1..332 | 1424 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18344-PA | 332 | GM18344-PA | 1..332 | 1..332 | 1760 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23159-PA | 332 | GD23159-PA | 1..332 | 1..332 | 1764 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\oaf-PA | 322 | GJ17294-PA | 17..322 | 25..332 | 1346 | 84.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23944-PA | 317 | GK23944-PA | 24..317 | 46..332 | 1330 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18160-PA | 331 | GE18160-PA | 1..331 | 1..332 | 1657 | 94.9 | Plus |