Clone RE25175 Report

Search the DGRC for RE25175

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:251
Well:75
Vector:pFlc-1
Associated Gene/TranscriptCG10592-RA
Protein status:RE25175.pep: gold
Preliminary Size:1622
Sequenced Size:1765

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10592 2002-01-01 Sim4 clustering to Release 2
CG10592 2002-02-27 Blastp of sequenced clone
CG10592 2003-01-01 Sim4 clustering to Release 3
CG10592 2008-04-29 Release 5.5 accounting
CG10592 2008-08-15 Release 5.9 accounting
CG10592 2008-12-18 5.12 accounting

Clone Sequence Records

RE25175.complete Sequence

1765 bp (1765 high quality bases) assembled on 2002-02-27

GenBank Submission: AY084142

> RE25175.complete
AGTTTCGCGGTTACTCCCAAACGGAGCATTCCTCAGTTTAAAGTTACCGC
CCCTACCCCAAAATGGTAAAGAGTTGCCTGATCTTGTGCTTCTTCGCTCT
CCTGGTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAGCACGCCC
AACATCCCCGTCTGCAATCATCACGCGACTTCGAGGCCCTCGACGAGGAG
CTGGACACACGATTCTGGCACGATAAGGCCCAATCGATTCTGGCCGATAA
GCTGGCCGGCCATAAAAAGCTCAACGAGAATCGCGCCAAGAACGTGATCC
TATTTTTGGGCGATGGCATGTCCGTTCACACGATCGCGGCCACACGTGCT
TTCATGGGCGATAGCAACAAGCAGGTCTTCTTCGAGAAGTTCCCCTACTT
GGGTCTGTCCAAGACGTATGCCGTCAACGAGCGTACTCCGGACTCGGCCA
ACACTGCTACGGCCTATTTGACCGGAGTCAAGGCCAACTATGGCACCATT
GGAGTCAATGCCCAGGTGCAGAGGGGCGACTGTGTGACCAATTCGAGTAG
CCATGTCCAGAGCATTGGTCAGTGGGCCCAGGAGGCCGGCAAGTGGGCCG
GTTTGGTGACCACCGCCCGGGTGACACACGCTTCTCCAGCCGGAGTTTAT
GCCCATGTTTCCGAACGGAATTGGGAGCACGATGGTGAAATCATCAGCTC
CAAATGCAGTCCCGACGTCAACACCGATATTGCCCGGCAGCTGGTCGAGT
GGCCAGTGGGTCAGGAACTACGCGTCATCATGGGCGGCGGTCGATCCTAT
TTTCGGGATCAGTCCCAGCACGATGAGACTGGCGTTTCGGGCTTGCGAAC
CGATGGACGCGATCTGATCAGCGATTGGCGAGAGATCAAGAAACAGCAGG
GAGCGGAGGGCAAGTACGTCTGGTCACTTAAGGGCCTGAAGGAAACGGAT
ATTAGCAAGACGGATTACCTTCTCGGTCTCTTCGACACCTCCCATCTGCC
CTACCATGGCGATCGTCGCCGTACCCATTATGAAGATGCAGAGCCATCCC
TTTCCGACATGACAGAAGCGGCCATCAAGATGCTCAGCAAGAACGAGGAG
GGTTACTTCCTCTTCGTGGAGAGTGGACGCATTGATATGGCCCATCACGC
CACCAAGGCGATGAAGGCTCTGGAGGACACCGAAGAATTCGCGGCAGCCG
TGGAACTGGCTAGGAAAATGACCGACGAGGAGGACACGCTGATTGTGGTG
ACATCGGATCACTCGCACACCATGTCTATCAACGGCTATCCGTACCGTCG
ACAGAACATCCTTTCCCTTGCTCCCAATCTGGCTGATGATGAGCTTCCCT
TTACCATCTTGTCGTATGCCAATGGTCCAGGATTTGATGATACCTACAGC
ACTAAAGATGGACGCATTGATCTTTCCCATGCGGACACCACAAGCGCAGA
GTTTGAGTTCCAGGCCACGGTTCCCTTGAGCAGCGAAACCCACGGCGCTG
AGGATGTGGGTGTCTTTGCCTCCGGTCCCTTCGAGCACCTGTTCACCGGC
AATTATGAGCAGAGTGCCATCCCAGCCATGATGGCTTATGCAGCCAACAT
TGGACCATTTGCCAAGGACAAGATTAATGAGCAATAAAGTCCAGACTACA
GTCGCATACTCATAAGGAATACTCAGTAAATAGTTAAGGGGAAATGCAAA
ATGTTATGTTTTTTCTGGTCAGTTAAATATAAAAAAATATACTTCTCGCA
AAAAAAAAAAAAAAA

RE25175.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-RA 1798 CG10592-RA 42..1792 1..1751 8740 99.9 Plus
CG1809-RA 2051 CG1809-RA 465..520 288..343 175 87.5 Plus
CG1809-RA 2051 CG1809-RA 756..865 573..682 175 77.2 Plus
CG1809.b 2225 CG1809.b 465..520 288..343 175 87.5 Plus
CG1809.b 2225 CG1809.b 756..865 573..682 175 77.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5585839..5586984 1292..147 5715 99.9 Minus
chr3L 24539361 chr3L 5585313..5585770 1749..1292 2290 100 Minus
chr3L 24539361 chr3L 5587698..5587844 147..1 705 98.6 Minus
chr3L 24539361 chr3L 5589285..5589348 1208..1271 185 85.9 Plus
chr3R 27901430 chr3R 16830210..16830294 655..571 185 81.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5593267..5594412 1292..147 5730 100 Minus
3L 28110227 3L 5592739..5593198 1751..1292 2300 100 Minus
3L 28110227 3L 5595126..5595272 147..1 720 99.3 Minus
3L 28110227 3L 5596713..5596776 1208..1271 185 85.9 Plus
3R 32079331 3R 21006349..21006433 655..571 185 81.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5586367..5587512 1292..147 5730 100 Minus
3L 28103327 3L 5585839..5586298 1751..1292 2300 100 Minus
3L 28103327 3L 5588226..5588372 147..1 720 99.3 Minus
2R 25260384 2R 9563594..9563649 288..343 175 87.5 Plus
2R 25260384 2R 9563885..9563994 573..682 175 77.2 Plus
Blast to na_te.dros performed on 2019-03-16 12:05:25 has no hits.

RE25175.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:06:28 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5585313..5585769 1293..1749 100 <- Minus
chr3L 5585839..5586983 148..1292 99 <- Minus
chr3L 5587698..5587844 1..147 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:33 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1575 63..1637 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:32:52 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1575 63..1637 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:51:52 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1575 63..1637 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:35 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1575 63..1637 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:02 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1575 63..1637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:58:50 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1749 1..1749 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:32:52 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1749 1..1749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:51:52 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1749 1..1749 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:36 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1749 1..1749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:02 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
CG10592-RA 1..1749 1..1749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:28 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5595126..5595272 1..147 99   Minus
3L 5592741..5593197 1293..1749 100 <- Minus
3L 5593267..5594411 148..1292 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:28 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5595126..5595272 1..147 99   Minus
3L 5592741..5593197 1293..1749 100 <- Minus
3L 5593267..5594411 148..1292 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:28 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5595126..5595272 1..147 99   Minus
3L 5592741..5593197 1293..1749 100 <- Minus
3L 5593267..5594411 148..1292 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:51:52 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5585841..5586297 1293..1749 100 <- Minus
arm_3L 5586367..5587511 148..1292 100 <- Minus
arm_3L 5588226..5588372 1..147 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:39:24 Download gff for RE25175.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5585841..5586297 1293..1749 100 <- Minus
3L 5586367..5587511 148..1292 100 <- Minus
3L 5588226..5588372 1..147 99   Minus

RE25175.pep Sequence

Translation from 62 to 1636

> RE25175.pep
MVKSCLILCFFALLVIQARSDLADDQEHAQHPRLQSSRDFEALDEELDTR
FWHDKAQSILADKLAGHKKLNENRAKNVILFLGDGMSVHTIAATRAFMGD
SNKQVFFEKFPYLGLSKTYAVNERTPDSANTATAYLTGVKANYGTIGVNA
QVQRGDCVTNSSSHVQSIGQWAQEAGKWAGLVTTARVTHASPAGVYAHVS
ERNWEHDGEIISSKCSPDVNTDIARQLVEWPVGQELRVIMGGGRSYFRDQ
SQHDETGVSGLRTDGRDLISDWREIKKQQGAEGKYVWSLKGLKETDISKT
DYLLGLFDTSHLPYHGDRRRTHYEDAEPSLSDMTEAAIKMLSKNEEGYFL
FVESGRIDMAHHATKAMKALEDTEEFAAAVELARKMTDEEDTLIVVTSDH
SHTMSINGYPYRRQNILSLAPNLADDELPFTILSYANGPGFDDTYSTKDG
RIDLSHADTTSAEFEFQATVPLSSETHGAEDVGVFASGPFEHLFTGNYEQ
SAIPAMMAYAANIGPFAKDKINEQ*

RE25175.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10455-PA 525 GF10455-PA 1..525 1..523 2483 86.1 Plus
Dana\GF12475-PA 516 GF12475-PA 43..516 45..517 1506 60.6 Plus
Dana\GF23984-PA 517 GF23984-PA 8..510 6..514 1142 46 Plus
Dana\GF17216-PA 543 GF17216-PA 1..528 1..514 1130 45.3 Plus
Dana\GF23560-PA 523 GF23560-PA 28..508 37..515 1083 47 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14123-PA 524 GG14123-PA 1..524 1..524 2700 94.5 Plus
Dere\GG24085-PA 515 GG24085-PA 1..515 1..517 1540 57.5 Plus
Dere\GG15276-PA 517 GG15276-PA 4..510 2..514 1149 46.6 Plus
Dere\GG15026-PA 522 GG15026-PA 33..515 26..514 1129 46.8 Plus
Dere\GG16809-PA 546 GG16809-PA 5..530 7..513 1121 44.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16243-PA 525 GH16243-PA 9..524 4..523 2035 72.4 Plus
Dgri\GH19931-PA 524 GH19931-PA 7..520 7..517 1464 55.6 Plus
Dgri\GH18436-PA 542 GH18436-PA 1..525 6..513 1131 46 Plus
Dgri\GH15197-PA 525 GH15197-PA 32..518 24..514 1128 48.8 Plus
Dgri\GH19241-PA 526 GH19241-PA 32..515 26..514 1094 46.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Alp10-PA 524 CG10592-PA 1..524 1..524 2736 100 Plus
Alp6-PA 515 CG1809-PA 5..515 11..517 1488 57.9 Plus
Alp9-PB 517 CG5150-PB 29..510 27..514 1124 48.1 Plus
Alp9-PA 517 CG5150-PA 29..510 27..514 1124 48.1 Plus
Alp5-PA 522 CG10827-PA 33..515 26..514 1104 46.8 Plus
phu-PA 546 CG8147-PA 8..528 10..511 1095 45.4 Plus
Alp1-PA 523 CG5656-PA 4..508 8..515 1076 46 Plus
Alp1-PB 530 CG5656-PB 4..515 8..515 1059 45.4 Plus
Alp2-PA 538 CG3290-PA 59..525 45..514 864 40.8 Plus
Alp8-PB 533 CG3264-PB 58..525 45..514 854 41.6 Plus
Alp8-PA 533 CG3264-PA 58..525 45..514 854 41.6 Plus
Alp12-PE 596 CG16771-PE 103..588 43..523 815 40.3 Plus
Alp12-PD 596 CG16771-PD 103..588 43..523 815 40.3 Plus
Alp12-PC 596 CG16771-PC 103..588 43..523 815 40.3 Plus
Alp12-PB 596 CG16771-PB 103..588 43..523 815 40.3 Plus
Alp12-PA 596 CG16771-PA 103..588 43..523 815 40.3 Plus
Alp7-PA 543 CG3292-PA 63..533 44..514 796 40.2 Plus
Alp4-PA 596 CG1462-PA 50..545 45..519 787 38 Plus
Alp11-PA 483 CG8105-PA 35..467 45..514 765 41.3 Plus
Alp4-PB 502 CG1462-PB 1..451 86..519 720 38.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13179-PA 525 GI13179-PA 20..525 14..523 2086 74.6 Plus
Dmoj\GI19888-PA 524 GI19888-PA 11..520 6..517 1557 58.4 Plus
Dmoj\GI12135-PA 526 GI12135-PA 32..519 24..514 1165 49.5 Plus
Dmoj\GI22009-PA 526 GI22009-PA 32..514 26..514 1113 47 Plus
Dmoj\GI24012-PA 547 GI24012-PA 66..529 51..513 1091 47.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12007-PA 538 GL12007-PA 8..538 6..523 2195 77.6 Plus
Dper\GL17170-PA 520 GL17170-PA 26..515 31..516 1488 58.4 Plus
Dper\GL23248-PA 525 GL23248-PA 38..517 26..514 1130 47.6 Plus
Dper\GL16938-PA 533 GL16938-PA 57..523 45..514 871 41.1 Plus
Dper\GL13610-PA 392 GL13610-PA 60..391 45..380 789 47.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10422-PA 537 GA10422-PA 8..537 6..523 2225 78.1 Plus
Dpse\GA14786-PA 520 GA14786-PA 26..516 31..517 1493 58.7 Plus
Dpse\GA18693-PA 522 GA18693-PA 29..511 25..514 1134 48.5 Plus
Dpse\GA10582-PA 525 GA10582-PA 38..517 26..514 1131 47.6 Plus
Dpse\GA20850-PA 543 GA20850-PA 59..527 45..513 1120 48.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13909-PA 524 GM13909-PA 1..524 1..524 2779 97.5 Plus
Dsec\GM21133-PA 515 GM21133-PA 5..515 11..517 1535 58.5 Plus
Dsec\GM14710-PA 517 GM14710-PA 29..510 27..514 1130 47.6 Plus
Dsec\GM15118-PA 522 GM15118-PA 33..515 26..514 1117 46.6 Plus
Dsec\GM23808-PA 546 GM23808-PA 56..530 40..513 1116 48 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13186-PA 524 GD13186-PA 1..524 1..524 2794 97.9 Plus
Dsim\GD18617-PA 546 GD18617-PA 5..530 7..513 1116 44.9 Plus
Dsim\GD13892-PA 511 GD13892-PA 29..504 27..514 1068 45.7 Plus
Dsim\GD20021-PA 521 GD20021-PA 33..514 26..514 1044 45 Plus
Dsim\GD25138-PA 538 GD25138-PA 59..525 45..514 851 39.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11955-PA 528 GJ11955-PA 14..526 5..521 2132 75.7 Plus
Dvir\GJ15058-PA 524 GJ15058-PA 20..520 15..517 1506 58 Plus
Dvir\GJ10462-PA 520 GJ10462-PA 32..511 26..514 1162 49.5 Plus
Dvir\GJ13410-PA 526 GJ13410-PA 41..519 22..514 1160 49.1 Plus
Dvir\GJ23643-PA 545 GJ23643-PA 66..528 51..513 1119 49 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16879-PA 530 GK16879-PA 35..528 30..521 2100 77.7 Plus
Dwil\GK21822-PA 520 GK21822-PA 48..516 51..517 1413 56.3 Plus
Dwil\GK10963-PA 547 GK10963-PA 43..530 29..513 1138 47.8 Plus
Dwil\GK11139-PA 529 GK11139-PA 35..515 26..514 1133 47.3 Plus
Dwil\GK17300-PA 524 GK17300-PA 28..517 22..514 1120 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20547-PA 524 GE20547-PA 1..524 1..524 2725 95.4 Plus
Dyak\GE19286-PA 515 GE19286-PA 25..515 31..517 1517 59.4 Plus
Dyak\GE21498-PA 517 GE21498-PA 4..510 2..514 1153 46.6 Plus
Dyak\GE25953-PA 548 GE25953-PA 5..532 7..513 1127 45.5 Plus
Dyak\GE25027-PA 522 GE25027-PA 33..515 26..514 1097 46.8 Plus

RE25175.hyp Sequence

Translation from 62 to 1636

> RE25175.hyp
MVKSCLILCFFALLVIQARSDLADDQEHAQHPRLQSSRDFEALDEELDTR
FWHDKAQSILADKLAGHKKLNENRAKNVILFLGDGMSVHTIAATRAFMGD
SNKQVFFEKFPYLGLSKTYAVNERTPDSANTATAYLTGVKANYGTIGVNA
QVQRGDCVTNSSSHVQSIGQWAQEAGKWAGLVTTARVTHASPAGVYAHVS
ERNWEHDGEIISSKCSPDVNTDIARQLVEWPVGQELRVIMGGGRSYFRDQ
SQHDETGVSGLRTDGRDLISDWREIKKQQGAEGKYVWSLKGLKETDISKT
DYLLGLFDTSHLPYHGDRRRTHYEDAEPSLSDMTEAAIKMLSKNEEGYFL
FVESGRIDMAHHATKAMKALEDTEEFAAAVELARKMTDEEDTLIVVTSDH
SHTMSINGYPYRRQNILSLAPNLADDELPFTILSYANGPGFDDTYSTKDG
RIDLSHADTTSAEFEFQATVPLSSETHGAEDVGVFASGPFEHLFTGNYEQ
SAIPAMMAYAANIGPFAKDKINEQ*

RE25175.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10592-PA 524 CG10592-PA 1..524 1..524 2736 100 Plus
CG1809-PA 515 CG1809-PA 5..515 11..517 1488 57.9 Plus
CG5150-PB 517 CG5150-PB 29..510 27..514 1124 48.1 Plus
CG5150-PA 517 CG5150-PA 29..510 27..514 1124 48.1 Plus
CG10827-PA 522 CG10827-PA 33..515 26..514 1104 46.8 Plus