Clone RE25221 Report

Search the DGRC for RE25221

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:252
Well:21
Vector:pFlc-1
Associated Gene/TranscriptCG12355-RA
Protein status:RE25221.pep: gold
Sequenced Size:1916

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12355 2008-04-29 Release 5.5 accounting
CG12355 2008-08-15 Release 5.9 accounting
CG12355 2008-12-18 5.12 accounting

Clone Sequence Records

RE25221.complete Sequence

1916 bp (1916 high quality bases) assembled on 2006-08-30

GenBank Submission: BT029140

> RE25221.complete
AGTAAAGCTCCGTTAGCGCTGGCGGCTGGCCGCTTCCAAAAAAAATTCAT
TAGAAAGTTGTCACAAAAAATTTGTTATTAATATTAATCAAAATTCAAGC
AATTAAGATAATGGCTCGGTTAATTTCGGGAGTTCGCAATTTGTTCCATC
GATATCCATTCGTCACCAACAGCGCCATCTATGGGAGCCTTTATGTGGGC
GCCGAGTATTCCCAGCAATTCGCATCCAAACGCTGGTTGGCCGTAAGTAA
AATCATTTACAGACACTCATGTGCAGAATATGAGCTTGGAGATATATCCG
AGGGCGATCTGGCGATTTCTAATCCTATTTATGTGCCCCGTAGACGGCGA
GCAAACCTGAGGATATCGATTATGCAACAATAGGAAGATATGCCGTGATG
GGTACTGCAGTATATGCCCCAACACTTTACCTTTGGTTCGTGCCCTCAGT
TTTATGAATCTGTACATACATAGCCACATTTTATTATTACTTGCACATGT
ACACAGTGATGGTCGACATAGTAGCTCTGCTTTTTTGTTTGATTTCTAAT
ACAATCTGTTTATCATGAAATCTATAACTTTTCATTATAATTTCTTATTT
CTAAATTTCTGATTTTATGTTATGACTAAAAAACGACACTTTAGAGCAAA
AACAGTCAACTTAAAATATTAGTATATAAATCGGAGCTATTACGTTGGCC
GAGGCTGTTCATACTAACACATCTGTGGACCATTCAATTTACTCACACTT
ACATGCTTGCCATTTAACCATTCTTTTTATTTCCTCAATTTGCTTCGCCG
TACGCTTCTGTTGTTGTTTTTGACTTTTATCAATTTGTTTACGATTCCGG
TAAAGCTCCATGAGCACGTGTCGCAAGTCAAGAGCATGTCTCTCCGCCAT
TTTTATCACTTTCTCTTCACACTTTCTCTTTAGAAGCACCCACGCCACCA
GAGCACCAAGCTTTTCCTCTTTAATTGAGTGAGAGGGAAAAGCTGCCCAG
AAAAGCACGCAACGCACTGAGAAATTGGGCATATTTGCACGACATAAAAG
TCAAAATGCAACGTAAGTTTGGGAAGTTGGAAGTTGGCTACTGGGGATCT
GGATTCGAAAAACAAAACTTACAAAAGAAAACAAGATGCACACAAGGATA
TACAAACATAGGGAATAAAGATCTCGGAATATTATAAATACATATCACAA
ACACATACACAATGTATGAAACACTTACACATAAATAAATACTAACACCA
TAAATTGATTACAAATATGCAAACACACTATATAAAGTAACTCCAAAAGC
ACTATATATACACCAAAAAAAGATCTTGCTTACCTAGCCTGCTTTAGCTT
TTACTTTGATGTCTTAAATATAATCAAGCATATATATCAAGCATAATAAT
TCAAATAATCAATTTCCTAGGTACAAATGGTTAGATCGCGCTTTTCCTGG
CACCACTAAGGTTATCATAGTTAAAAAATTAGTGCTTGATCAGTTTGTAC
TAACGCCTTATCTATTGACTGTGTTTTATGCAGGCATGTCCATCATGGAG
GGCTCTGCGGATATTTTCCTGGAACTCCGCGAAAAATTCGTGCCGACTTT
TATGCGTTCCTGCATTTTCTGGTTGCCCGCGCAGGCCTTGAACTTTTCCC
TGGTTGCACCCCGATTCCGTGTCATCTATATGGGTATTTGTGGATTGATT
TGGGTGAATATTCTATGTTGGACCAAGCGGCAAAGTCTTCCAGTCGCAAC
GAAAGAAATTGCAACTGATTCAAATAATAATGCAGCTGCCATAAGGAATT
CCGAAACATGAGATTTGAATATACACCATACACCATAACCATGTATATAG
TCCTAGATAGTTTTTGACCATGCATTGCCAAATAAAGGAGAAGCAAATAG
AAAAAAAAAAAAAAAA

RE25221.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12355-RC 1901 CG12355-RC 1..1900 1..1900 9500 100 Plus
CG12355-RB 843 CG12355-RB 356..836 1420..1900 2405 100 Plus
CG12355.b 822 CG12355.b 339..818 1421..1900 2400 100 Plus
CG12355.b 822 CG12355.b 1..341 725..1065 1705 100 Plus
CG12355-RB 843 CG12355-RB 23..264 1..242 1210 100 Plus
CG12355-RB 843 CG12355-RB 265..358 344..437 470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15483447..15484967 1534..1 7345 98.9 Minus
chr3L 24539361 chr3L 15482943..15483312 1900..1531 1790 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15493468..15495001 1534..1 7670 100 Minus
3L 28110227 3L 15492964..15493333 1900..1531 1850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15486568..15488101 1534..1 7670 100 Minus
3L 28103327 3L 15486064..15486433 1900..1531 1850 100 Minus
Blast to na_te.dros performed 2019-03-15 12:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1204..1298 1179..1272 129 63.5 Plus
opus 7521 opus OPUS 7521bp 6185..6264 627..550 116 65.9 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6857..6917 627..568 113 67.2 Minus

RE25221.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:50:53 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15482943..15483309 1534..1900 98 <- Minus
chr3L 15483448..15484967 1..1533 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 20:04:36 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 15:27:57 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-03 21:50:34 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 15:51:37 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 20:11:12 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 17:59:05 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:27:57 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
CG12355-RC 1..1900 1..1900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-03 21:50:34 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:33:27 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
CG12355-RB 1..132 111..242 100 == Plus
CG12355-RB 224..704 1420..1900 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 20:11:12 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:53 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15492964..15493330 1534..1900 100 <- Minus
3L 15493469..15495001 1..1533 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:53 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15492964..15493330 1534..1900 100 <- Minus
3L 15493469..15495001 1..1533 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:53 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15492964..15493330 1534..1900 100 <- Minus
3L 15493469..15495001 1..1533 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:50:34 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15486064..15486430 1534..1900 100 <- Minus
arm_3L 15486569..15488101 1..1533 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:54:21 Download gff for RE25221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15486064..15486430 1534..1900 100 <- Minus
3L 15486569..15488101 1..1533 100   Minus

RE25221.pep Sequence

Translation from 1535 to 1810

> RE25221.pep
MSIMEGSADIFLELREKFVPTFMRSCIFWLPAQALNFSLVAPRFRVIYMG
ICGLIWVNILCWTKRQSLPVATKEIATDSNNNAAAIRNSET*

RE25221.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10733-PA 83 GF10733-PA 1..73 1..73 353 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13550-PA 204 GG13550-PA 114..204 1..91 461 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17024-PA 165 GH17024-PA 65..132 1..68 334 86.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12355-PD 91 CG12355-PD 1..91 1..91 474 100 Plus
CG12355-PA 91 CG12355-PA 1..91 1..91 474 100 Plus
CG12355-PE 204 CG12355-PE 114..204 1..91 474 100 Plus
CG12355-PB 204 CG12355-PB 114..204 1..91 474 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12229-PA 200 GI12229-PA 114..181 1..68 310 79.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25660-PA 199 GL25660-PA 114..195 1..82 357 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23640-PA 199 GA23640-PA 114..195 1..82 357 78 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24491-PA 328 GM24491-PA 238..328 1..91 471 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12563-PA 205 GD12563-PA 115..205 1..91 477 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11459-PA 197 GJ11459-PA 114..197 1..84 310 65.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19851-PA 204 GE19851-PA 114..204 1..91 465 94.5 Plus
Dyak\GE22849-PA 204 GE22849-PA 114..204 1..91 465 94.5 Plus

RE25221.hyp Sequence

Translation from 1535 to 1810

> RE25221.hyp
MSIMEGSADIFLELREKFVPTFMRSCIFWLPAQALNFSLVAPRFRVIYMG
ICGLIWVNILCWTKRQSLPVATKEIATDSNNNAAAIRNSET*

RE25221.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12355-PD 91 CG12355-PD 1..91 1..91 474 100 Plus
CG12355-PA 91 CG12355-PA 1..91 1..91 474 100 Plus
CG12355-PE 204 CG12355-PE 114..204 1..91 474 100 Plus
CG12355-PB 204 CG12355-PB 114..204 1..91 474 100 Plus