RE25221.complete Sequence
1916 bp (1916 high quality bases) assembled on 2006-08-30
GenBank Submission: BT029140
> RE25221.complete
AGTAAAGCTCCGTTAGCGCTGGCGGCTGGCCGCTTCCAAAAAAAATTCAT
TAGAAAGTTGTCACAAAAAATTTGTTATTAATATTAATCAAAATTCAAGC
AATTAAGATAATGGCTCGGTTAATTTCGGGAGTTCGCAATTTGTTCCATC
GATATCCATTCGTCACCAACAGCGCCATCTATGGGAGCCTTTATGTGGGC
GCCGAGTATTCCCAGCAATTCGCATCCAAACGCTGGTTGGCCGTAAGTAA
AATCATTTACAGACACTCATGTGCAGAATATGAGCTTGGAGATATATCCG
AGGGCGATCTGGCGATTTCTAATCCTATTTATGTGCCCCGTAGACGGCGA
GCAAACCTGAGGATATCGATTATGCAACAATAGGAAGATATGCCGTGATG
GGTACTGCAGTATATGCCCCAACACTTTACCTTTGGTTCGTGCCCTCAGT
TTTATGAATCTGTACATACATAGCCACATTTTATTATTACTTGCACATGT
ACACAGTGATGGTCGACATAGTAGCTCTGCTTTTTTGTTTGATTTCTAAT
ACAATCTGTTTATCATGAAATCTATAACTTTTCATTATAATTTCTTATTT
CTAAATTTCTGATTTTATGTTATGACTAAAAAACGACACTTTAGAGCAAA
AACAGTCAACTTAAAATATTAGTATATAAATCGGAGCTATTACGTTGGCC
GAGGCTGTTCATACTAACACATCTGTGGACCATTCAATTTACTCACACTT
ACATGCTTGCCATTTAACCATTCTTTTTATTTCCTCAATTTGCTTCGCCG
TACGCTTCTGTTGTTGTTTTTGACTTTTATCAATTTGTTTACGATTCCGG
TAAAGCTCCATGAGCACGTGTCGCAAGTCAAGAGCATGTCTCTCCGCCAT
TTTTATCACTTTCTCTTCACACTTTCTCTTTAGAAGCACCCACGCCACCA
GAGCACCAAGCTTTTCCTCTTTAATTGAGTGAGAGGGAAAAGCTGCCCAG
AAAAGCACGCAACGCACTGAGAAATTGGGCATATTTGCACGACATAAAAG
TCAAAATGCAACGTAAGTTTGGGAAGTTGGAAGTTGGCTACTGGGGATCT
GGATTCGAAAAACAAAACTTACAAAAGAAAACAAGATGCACACAAGGATA
TACAAACATAGGGAATAAAGATCTCGGAATATTATAAATACATATCACAA
ACACATACACAATGTATGAAACACTTACACATAAATAAATACTAACACCA
TAAATTGATTACAAATATGCAAACACACTATATAAAGTAACTCCAAAAGC
ACTATATATACACCAAAAAAAGATCTTGCTTACCTAGCCTGCTTTAGCTT
TTACTTTGATGTCTTAAATATAATCAAGCATATATATCAAGCATAATAAT
TCAAATAATCAATTTCCTAGGTACAAATGGTTAGATCGCGCTTTTCCTGG
CACCACTAAGGTTATCATAGTTAAAAAATTAGTGCTTGATCAGTTTGTAC
TAACGCCTTATCTATTGACTGTGTTTTATGCAGGCATGTCCATCATGGAG
GGCTCTGCGGATATTTTCCTGGAACTCCGCGAAAAATTCGTGCCGACTTT
TATGCGTTCCTGCATTTTCTGGTTGCCCGCGCAGGCCTTGAACTTTTCCC
TGGTTGCACCCCGATTCCGTGTCATCTATATGGGTATTTGTGGATTGATT
TGGGTGAATATTCTATGTTGGACCAAGCGGCAAAGTCTTCCAGTCGCAAC
GAAAGAAATTGCAACTGATTCAAATAATAATGCAGCTGCCATAAGGAATT
CCGAAACATGAGATTTGAATATACACCATACACCATAACCATGTATATAG
TCCTAGATAGTTTTTGACCATGCATTGCCAAATAAAGGAGAAGCAAATAG
AAAAAAAAAAAAAAAA
RE25221.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12355-RC | 1901 | CG12355-RC | 1..1900 | 1..1900 | 9500 | 100 | Plus |
CG12355-RB | 843 | CG12355-RB | 356..836 | 1420..1900 | 2405 | 100 | Plus |
CG12355.b | 822 | CG12355.b | 339..818 | 1421..1900 | 2400 | 100 | Plus |
CG12355.b | 822 | CG12355.b | 1..341 | 725..1065 | 1705 | 100 | Plus |
CG12355-RB | 843 | CG12355-RB | 23..264 | 1..242 | 1210 | 100 | Plus |
CG12355-RB | 843 | CG12355-RB | 265..358 | 344..437 | 470 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 15483447..15484967 | 1534..1 | 7345 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 15482943..15483312 | 1900..1531 | 1790 | 98.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15493468..15495001 | 1534..1 | 7670 | 100 | Minus |
3L | 28110227 | 3L | 15492964..15493333 | 1900..1531 | 1850 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 15486568..15488101 | 1534..1 | 7670 | 100 | Minus |
3L | 28103327 | 3L | 15486064..15486433 | 1900..1531 | 1850 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 12:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1204..1298 | 1179..1272 | 129 | 63.5 | Plus |
opus | 7521 | opus OPUS 7521bp | 6185..6264 | 627..550 | 116 | 65.9 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6857..6917 | 627..568 | 113 | 67.2 | Minus |
RE25221.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:50:53 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 15482943..15483309 | 1534..1900 | 98 | <- | Minus |
chr3L | 15483448..15484967 | 1..1533 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 20:04:36 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 15:27:57 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-03 21:50:34 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 15:51:37 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 20:11:12 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 17:59:05 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:27:57 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12355-RC | 1..1900 | 1..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-03 21:50:34 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 17:33:27 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12355-RB | 1..132 | 111..242 | 100 | == | Plus |
CG12355-RB | 224..704 | 1420..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 20:11:12 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:53 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15492964..15493330 | 1534..1900 | 100 | <- | Minus |
3L | 15493469..15495001 | 1..1533 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:53 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15492964..15493330 | 1534..1900 | 100 | <- | Minus |
3L | 15493469..15495001 | 1..1533 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:53 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15492964..15493330 | 1534..1900 | 100 | <- | Minus |
3L | 15493469..15495001 | 1..1533 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:50:34 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15486064..15486430 | 1534..1900 | 100 | <- | Minus |
arm_3L | 15486569..15488101 | 1..1533 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:54:21 Download gff for
RE25221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15486064..15486430 | 1534..1900 | 100 | <- | Minus |
3L | 15486569..15488101 | 1..1533 | 100 | | Minus |
RE25221.pep Sequence
Translation from 1535 to 1810
> RE25221.pep
MSIMEGSADIFLELREKFVPTFMRSCIFWLPAQALNFSLVAPRFRVIYMG
ICGLIWVNILCWTKRQSLPVATKEIATDSNNNAAAIRNSET*
RE25221.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF10733-PA | 83 | GF10733-PA | 1..73 | 1..73 | 353 | 87.7 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13550-PA | 204 | GG13550-PA | 114..204 | 1..91 | 461 | 94.5 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH17024-PA | 165 | GH17024-PA | 65..132 | 1..68 | 334 | 86.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12355-PD | 91 | CG12355-PD | 1..91 | 1..91 | 474 | 100 | Plus |
CG12355-PA | 91 | CG12355-PA | 1..91 | 1..91 | 474 | 100 | Plus |
CG12355-PE | 204 | CG12355-PE | 114..204 | 1..91 | 474 | 100 | Plus |
CG12355-PB | 204 | CG12355-PB | 114..204 | 1..91 | 474 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI12229-PA | 200 | GI12229-PA | 114..181 | 1..68 | 310 | 79.4 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL25660-PA | 199 | GL25660-PA | 114..195 | 1..82 | 357 | 78 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23640-PA | 199 | GA23640-PA | 114..195 | 1..82 | 357 | 78 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24491-PA | 328 | GM24491-PA | 238..328 | 1..91 | 471 | 95.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12563-PA | 205 | GD12563-PA | 115..205 | 1..91 | 477 | 97.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ11459-PA | 197 | GJ11459-PA | 114..197 | 1..84 | 310 | 65.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE19851-PA | 204 | GE19851-PA | 114..204 | 1..91 | 465 | 94.5 | Plus |
Dyak\GE22849-PA | 204 | GE22849-PA | 114..204 | 1..91 | 465 | 94.5 | Plus |
RE25221.hyp Sequence
Translation from 1535 to 1810
> RE25221.hyp
MSIMEGSADIFLELREKFVPTFMRSCIFWLPAQALNFSLVAPRFRVIYMG
ICGLIWVNILCWTKRQSLPVATKEIATDSNNNAAAIRNSET*
RE25221.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12355-PD | 91 | CG12355-PD | 1..91 | 1..91 | 474 | 100 | Plus |
CG12355-PA | 91 | CG12355-PA | 1..91 | 1..91 | 474 | 100 | Plus |
CG12355-PE | 204 | CG12355-PE | 114..204 | 1..91 | 474 | 100 | Plus |
CG12355-PB | 204 | CG12355-PB | 114..204 | 1..91 | 474 | 100 | Plus |