BDGP Sequence Production Resources |
Search the DGRC for RE25242
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 252 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | APC10-RA |
Protein status: | RE25242.pep: gold |
Preliminary Size: | 1077 |
Sequenced Size: | 880 |
Gene | Date | Evidence |
---|---|---|
CG11419 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11419 | 2002-06-10 | Blastp of sequenced clone |
CG11419 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11419 | 2008-04-29 | Release 5.5 accounting |
CG11419 | 2008-08-15 | Release 5.9 accounting |
CG11419 | 2008-12-18 | 5.12 accounting |
880 bp (880 high quality bases) assembled on 2002-06-10
GenBank Submission: AY071207
> RE25242.complete AGCTGATTTGTGCGTCTTCAAGCGGCTTCTGTATAATAAAATTTAGATAG TTTTTTAAAATCGTAATTGCTGCAATGGCAGCCTCAATGGATGAGGATAT AACCGCCAACCCGCCCCCAAGCAGCGAAGAGGACCCCCTGGCCGAGGAGC GCCTAGGCTTTGTGCGGGAAGTGGGCGCGCAGGCTGTTTGGAGCCTCTCC TCCTGCAAGCCGGGATTTGGTGTAGAGCGTTTGCGAGACAACATCATGGA TACTTATTGGCAGTCGGACGGTCAGCTTCCCCACCTGGTCAACATTCAAT TCCACAAGCGTACGAACATCAGTCAGATTTACATATACACGGATTACAAG CTGGACGAGAGTTACACGCCATCAAGGATCTCCATACGATCTGGAACGAA CTTCAACGACTTGCAGGAGCTGCAGGTGATGGACCTGACCGAACCCACCG GCTGGGTGCAGATACCCATTAAGGATGGGAACGTCAAGTCCATACGCACC TTCATGCTTCAGATTGCTGTGATCTCGAACCACCAGAATGGCAGGGACAC CCACATGCGCCAGATCCGCATCCATGCGCCCGTCGAGGGCAAGCACTATC CTCTGGAACTGTTTGGCAAGTTTGGAACGGTCGACTTTCAGAAGTTCGCC ACCATTCGTTAGGGAAAACTTTGGGATTTATCGAAGTCTTTTATTTTTAT GTATTTTTCGGGGTATATAACTGCTAAAATACAACATTTAAAACATTACT TTAGTAATTTTATGCATATTTTTGGTGTTTCTAATTAAATGCCCGTCACT TGTATATATATAATTCGAATGCAAATAAATATATACCGTCGTCTAAGCTT AAGTACAAATTAACAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13404330..13404981 | 214..864 | 99 | <- | Minus |
chr2R | 13405041..13405253 | 1..213 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11419-RA | 1..588 | 75..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Apc10-RA | 1..588 | 75..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
APC10-RA | 1..588 | 75..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11419-RA | 1..588 | 75..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
APC10-RA | 1..588 | 75..662 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11419-RA | 1..864 | 1..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Apc10-RA | 1..864 | 1..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
APC10-RA | 4..867 | 1..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11419-RA | 1..864 | 1..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
APC10-RA | 4..867 | 1..864 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17517261..17517911 | 214..864 | 100 | <- | Minus |
2R | 17517971..17518183 | 1..213 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17517261..17517911 | 214..864 | 100 | <- | Minus |
2R | 17517971..17518183 | 1..213 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17517261..17517911 | 214..864 | 100 | <- | Minus |
2R | 17517971..17518183 | 1..213 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13404766..13405416 | 214..864 | 100 | <- | Minus |
arm_2R | 13405476..13405688 | 1..213 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17518460..17519110 | 214..864 | 100 | <- | Minus |
2R | 17519170..17519382 | 1..213 | 100 | Minus |
Translation from 74 to 661
> RE25242.pep MAASMDEDITANPPPSSEEDPLAEERLGFVREVGAQAVWSLSSCKPGFGV ERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPS RISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKSIRTFMLQIAVI SNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11781-PA | 195 | GF11781-PA | 1..195 | 1..195 | 1016 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21047-PA | 195 | GG21047-PA | 1..195 | 1..195 | 1045 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20482-PA | 197 | GH20482-PA | 1..197 | 1..195 | 958 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
APC10-PA | 195 | CG11419-PA | 1..195 | 1..195 | 1029 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21024-PA | 197 | GI21024-PA | 1..197 | 1..195 | 961 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10659-PA | 195 | GL10659-PA | 1..195 | 1..195 | 995 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10993-PA | 195 | GA10993-PA | 1..195 | 1..195 | 995 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19974-PA | 195 | GM19974-PA | 1..195 | 1..195 | 1054 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25470-PA | 195 | GD25470-PA | 1..195 | 1..195 | 1054 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21948-PA | 197 | GJ21948-PA | 1..197 | 1..195 | 976 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23298-PA | 197 | GK23298-PA | 1..197 | 1..195 | 966 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13990-PA | 195 | GE13990-PA | 1..195 | 1..195 | 1045 | 99.5 | Plus |
Translation from 74 to 661
> RE25242.hyp MAASMDEDITANPPPSSEEDPLAEERLGFVREVGAQAVWSLSSCKPGFGV ERLRDNIMDTYWQSDGQLPHLVNIQFHKRTNISQIYIYTDYKLDESYTPS RISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKSIRTFMLQIAVI SNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
APC10-PA | 195 | CG11419-PA | 1..195 | 1..195 | 1029 | 100 | Plus |