Clone RE25285 Report

Search the DGRC for RE25285

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:252
Well:85
Vector:pFlc-1
Associated Gene/TranscriptCG18507-RA
Protein status:RE25285.pep: gold
Preliminary Size:1809
Sequenced Size:1928

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18507 2002-01-01 Sim4 clustering to Release 2
CG18507 2002-05-17 Blastp of sequenced clone
CG18507 2003-01-01 Sim4 clustering to Release 3
CG18507 2008-04-29 Release 5.5 accounting
CG18507 2008-08-15 Release 5.9 accounting
CG18507 2008-12-18 5.12 accounting

Clone Sequence Records

RE25285.complete Sequence

1928 bp (1928 high quality bases) assembled on 2002-05-17

GenBank Submission: AY119123

> RE25285.complete
AGTTTGACGTGAACTCGCGAGCGGCCAACACGTAAGCGGCGCGTTGTGCA
GCTGTTTAAAAAACTCGGCAGCAAAATAACAAAAAAAAAAATACAAACCC
CAACAACAGCAACCAACTCGATAATAGGCAGCGGCGCAACTGAAGTGTGA
ATTCATATTGAGGTTATGTAACGCCATATAGTGTAAAATAAGGCGAAAAC
AAAACGCACTAGCTGCATTAGTCAGGTCACACGCTCACCTGCAAAAATTC
AGATAATTCCAAGCACGCGCATCGATTCGGTCTTATTACGCATTCGCAAT
GGAGGACACAAAAGCTCCAGCGGCAGCGCAGGCGCAAAGTCATCCTTTGG
AGGATGTGTCCCTCAATGGGAACGATGACGACAAGCAGACGCCCAAAAAT
TGGGTTAAATTCGACGACGAAGCGGATAGCGGTGAAAAAAACAATAACAG
TAACGACGGCGATGCCACACAGCAGCAACAACAACAAAACAAGTTAACTC
TGCCGCCACCGCCGTCGGTGGTTAGTAGCAACAACAACAGGAGGGCGCGC
TCGCGCAGTCCGTCCGCTACAGTAACAACAACCACACCTGTCCAGCGCCC
GGCAGTTTCCTCGACCACAGCTGCGACACCGGGCGAAGTGCAGCCGCATG
CCCCTCCGCCGGATGTGGCGCCCGCTGTTCTGACAACCGAGAGCACGCAC
GTTAATCTGAGTGCATCCGGCAGTGGCATCGTCAGCGGAGCAAGTGCGAA
TGCAAGTGCGAGTGGATACGCACCTGGCCCGGTCCGCCATACCCCGCAGC
TACCAAACCAAAAAGCCGCCGCCGCCCCCTCTCTATCGTCCGCTGGCGCG
GCATCCTCCGGACATCAGCATAATGGAGGTGGCGCCAACGGAACTGGAAT
TAGCCAGCCGGCGGACCAGGGATCCGGGATGCGCACAATCGAATTGTCAA
CGGGTCGTATACGCGAGGGATTCGCAAATGGCGATGTGATTGTCACACTT
CTGCCGGCCAACACGAAGTGGCCGTGGATAACCCCAGCCATATTCCGTCC
GGAACTGGTGCCCGAGGAGCTGATGGCTCAGGGTCTGACGCTCACTGTGG
AGGACTATGTGAACGCGATGGAGACGCTAGTAAACGACTACCGCTTCACC
GTGTACAACATCTGCTACAAGCGCATCCTGGTCTGCTGGATCCTGTTCGC
ATTTACGGTTTTGCTGGCCCTGCTCTTTTCCGGACTGCAGGGTGTGGCCC
TGTTCGCCCTGGGAGTGGGCTGGCTATTCCTGAACGCGGCGGCCATCTTC
CTGTGCATGTGGGTGAAGCTGCGCTTGTCGCGCGGCCTTGAGAAGTGCCT
GGCAAGAGTGAACCGGCAGCTAATGCGCCACAAGATCCTGCTGGTGCTGG
ACGATCGGGGCCGCATCTCGTGCCACAAGGTCAACCTGTGCTTCATGTAC
TTTGATGCCACACAGTGCGTTAATTTCCTGAACGAGTTCCTGGAGCATAC
GGAGCAAACTGGTGGCGATGCCATCAAGGCGGGCTGGGAGGCGAAGCTGG
ACATTGACCTAAACGATATTGTTATCCAGGGCAGTCAGCCGGTGCGAATG
CCCCGCAAGCAGGCCGTGGCCCAGGAGCTGTTTCTGAGCTACCTGCAGCG
CTGGGGCAAGGACTTCCTGCGCCGCCGTCTGGATTGGACTGTCCAGGAGG
CCGGCGTCCACGAGACGCCCCGCCATCTGCAATCGTCCATCTGTCCGTGC
CAATACGAGGAGGAGTTGTTGCGCAACAAGATCAAGATCAGCCTGCAGCA
CCGCCACTGCTGCGGCATCAACTGCATGGGCTGCTGGCTCTAATCCCTGA
CATGTAATCCTCAAAAAATGTTTCGTTTCTTAGATTGCCGAGAATCTATT
AAATGCCTAGCCAAAAAAAAAAAAAAAA

RE25285.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-RA 2004 CG18507-RA 27..1944 1..1918 9560 99.8 Plus
CG18507.c 1841 CG18507.c 1..1613 1..1613 8035 99.8 Plus
CG18507.a 1867 CG18507.a 27..1639 1..1613 8035 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13664233..13664825 1..595 2880 99.3 Plus
chr2L 23010047 chr2L 13667565..13668088 1090..1613 2605 99.8 Plus
chr2L 23010047 chr2L 13666673..13667055 592..974 1915 100 Plus
chr2L 23010047 chr2L 13668245..13668546 1611..1912 1510 100 Plus
chr2L 23010047 chr2L 13667391..13667507 974..1090 570 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13665528..13666122 1..595 2960 99.8 Plus
2L 23513712 2L 13668863..13669386 1090..1613 2605 99.8 Plus
2L 23513712 2L 13667971..13668353 592..974 1915 100 Plus
2L 23513712 2L 13669543..13669850 1611..1918 1540 100 Plus
2L 23513712 2L 13668689..13668805 974..1090 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13665528..13666122 1..595 2960 99.8 Plus
2L 23513712 2L 13668863..13669386 1090..1613 2605 99.8 Plus
2L 23513712 2L 13667971..13668353 592..974 1915 100 Plus
2L 23513712 2L 13669543..13669850 1611..1918 1540 100 Plus
2L 23513712 2L 13668689..13668805 974..1090 585 100 Plus
Blast to na_te.dros performed 2019-03-15 16:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2523 440..588 165 63.4 Plus
roo 9092 roo DM_ROO 9092bp 1110..1169 440..500 131 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2834 438..496 121 69.5 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2306..2338 349..381 120 84.8 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4358..4389 350..381 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2619..2676 442..497 113 70.7 Plus

RE25285.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:22:48 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13668247..13668546 1613..1912 100   Plus
chr2L 13664233..13664666 1..436 99 == Plus
chr2L 13664723..13664825 493..595 100 -> Plus
chr2L 13666677..13667055 596..974 100 -> Plus
chr2L 13667392..13667507 975..1090 99 -> Plus
chr2L 13667566..13668087 1091..1612 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:42 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1545 299..1843 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:06 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1545 299..1843 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:49 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1545 299..1843 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:32 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1545 299..1843 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:06 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1545 299..1843 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:29 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1912 1..1912 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:05 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1912 1..1912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:49 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 4..1915 1..1912 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:32 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 1..1912 1..1912 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:06 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
CG18507-RA 4..1915 1..1912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:48 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13668690..13668805 975..1090 100 -> Plus
2L 13665528..13666122 1..595 99 -> Plus
2L 13667975..13668353 596..974 100 -> Plus
2L 13668864..13669385 1091..1612 99 -> Plus
2L 13669545..13669844 1613..1912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:48 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13668690..13668805 975..1090 100 -> Plus
2L 13665528..13666122 1..595 99 -> Plus
2L 13667975..13668353 596..974 100 -> Plus
2L 13668864..13669385 1091..1612 99 -> Plus
2L 13669545..13669844 1613..1912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:48 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13668690..13668805 975..1090 100 -> Plus
2L 13665528..13666122 1..595 99 -> Plus
2L 13667975..13668353 596..974 100 -> Plus
2L 13668864..13669385 1091..1612 99 -> Plus
2L 13669545..13669844 1613..1912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:49 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13665528..13666122 1..595 99 -> Plus
arm_2L 13667975..13668353 596..974 100 -> Plus
arm_2L 13668690..13668805 975..1090 100 -> Plus
arm_2L 13668864..13669385 1091..1612 99 -> Plus
arm_2L 13669545..13669844 1613..1912 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:52 Download gff for RE25285.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13665528..13666122 1..595 99 -> Plus
2L 13667975..13668353 596..974 100 -> Plus
2L 13668690..13668805 975..1090 100 -> Plus
2L 13668864..13669385 1091..1612 99 -> Plus
2L 13669545..13669844 1613..1912 100   Plus

RE25285.pep Sequence

Translation from 298 to 1842

> RE25285.pep
MEDTKAPAAAQAQSHPLEDVSLNGNDDDKQTPKNWVKFDDEADSGEKNNN
SNDGDATQQQQQQNKLTLPPPPSVVSSNNNRRARSRSPSATVTTTTPVQR
PAVSSTTAATPGEVQPHAPPPDVAPAVLTTESTHVNLSASGSGIVSGASA
NASASGYAPGPVRHTPQLPNQKAAAAPSLSSAGAASSGHQHNGGGANGTG
ISQPADQGSGMRTIELSTGRIREGFANGDVIVTLLPANTKWPWITPAIFR
PELVPEELMAQGLTLTVEDYVNAMETLVNDYRFTVYNICYKRILVCWILF
AFTVLLALLFSGLQGVALFALGVGWLFLNAAAIFLCMWVKLRLSRGLEKC
LARVNRQLMRHKILLVLDDRGRISCHKVNLCFMYFDATQCVNFLNEFLEH
TEQTGGDAIKAGWEAKLDIDLNDIVIQGSQPVRMPRKQAVAQELFLSYLQ
RWGKDFLRRRLDWTVQEAGVHETPRHLQSSICPCQYEEELLRNKIKISLQ
HRHCCGINCMGCWL*

RE25285.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22962-PA 545 GF22962-PA 26..545 15..514 2075 82 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23869-PA 516 GG23869-PA 1..516 1..514 2402 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12998-PA 596 GH12998-PA 7..523 10..496 1695 70.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-PA 514 CG18507-PA 1..514 1..514 2712 100 Plus
CG18507-PE 510 CG18507-PE 1..494 1..499 2375 92.4 Plus
CG18507-PB 513 CG18507-PB 1..499 1..507 2372 91.3 Plus
CG18507-PD 510 CG18507-PD 1..489 1..494 2370 93.3 Plus
CG18507-PC 499 CG18507-PC 1..489 1..494 2370 93.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17671-PA 543 GI17671-PA 21..543 14..514 1891 75 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26077-PA 527 GL26077-PA 1..515 1..507 1891 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28714-PA 531 GA28714-PA 1..531 1..514 2253 83.5 Plus
Dpse\GA14966-PA 530 GA14966-PA 1..530 1..514 2240 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10680-PA 519 GM10680-PA 1..505 1..507 1947 86.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23913-PA 518 GD23913-PA 1..518 1..514 2699 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17866-PA 543 GJ17866-PA 26..543 15..514 1847 75 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24505-PA 529 GK24505-PA 4..529 2..514 1992 79.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18672-PA 525 GE18672-PA 1..525 1..514 2603 94.9 Plus

RE25285.hyp Sequence

Translation from 298 to 1842

> RE25285.hyp
MEDTKAPAAAQAQSHPLEDVSLNGNDDDKQTPKNWVKFDDEADSGEKNNN
SNDGDATQQQQQQNKLTLPPPPSVVSSNNNRRARSRSPSATVTTTTPVQR
PAVSSTTAATPGEVQPHAPPPDVAPAVLTTESTHVNLSASGSGIVSGASA
NASASGYAPGPVRHTPQLPNQKAAAAPSLSSAGAASSGHQHNGGGANGTG
ISQPADQGSGMRTIELSTGRIREGFANGDVIVTLLPANTKWPWITPAIFR
PELVPEELMAQGLTLTVEDYVNAMETLVNDYRFTVYNICYKRILVCWILF
AFTVLLALLFSGLQGVALFALGVGWLFLNAAAIFLCMWVKLRLSRGLEKC
LARVNRQLMRHKILLVLDDRGRISCHKVNLCFMYFDATQCVNFLNEFLEH
TEQTGGDAIKAGWEAKLDIDLNDIVIQGSQPVRMPRKQAVAQELFLSYLQ
RWGKDFLRRRLDWTVQEAGVHETPRHLQSSICPCQYEEELLRNKIKISLQ
HRHCCGINCMGCWL*

RE25285.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18507-PA 514 CG18507-PA 1..514 1..514 2712 100 Plus
CG18507-PE 510 CG18507-PE 1..494 1..499 2375 92.4 Plus
CG18507-PB 513 CG18507-PB 1..499 1..507 2372 91.3 Plus
CG18507-PD 510 CG18507-PD 1..489 1..494 2370 93.3 Plus
CG18507-PC 499 CG18507-PC 1..489 1..494 2370 93.3 Plus