BDGP Sequence Production Resources |
Search the DGRC for RE25285
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 252 |
Well: | 85 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18507-RA |
Protein status: | RE25285.pep: gold |
Preliminary Size: | 1809 |
Sequenced Size: | 1928 |
Gene | Date | Evidence |
---|---|---|
CG18507 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18507 | 2002-05-17 | Blastp of sequenced clone |
CG18507 | 2003-01-01 | Sim4 clustering to Release 3 |
CG18507 | 2008-04-29 | Release 5.5 accounting |
CG18507 | 2008-08-15 | Release 5.9 accounting |
CG18507 | 2008-12-18 | 5.12 accounting |
1928 bp (1928 high quality bases) assembled on 2002-05-17
GenBank Submission: AY119123
> RE25285.complete AGTTTGACGTGAACTCGCGAGCGGCCAACACGTAAGCGGCGCGTTGTGCA GCTGTTTAAAAAACTCGGCAGCAAAATAACAAAAAAAAAAATACAAACCC CAACAACAGCAACCAACTCGATAATAGGCAGCGGCGCAACTGAAGTGTGA ATTCATATTGAGGTTATGTAACGCCATATAGTGTAAAATAAGGCGAAAAC AAAACGCACTAGCTGCATTAGTCAGGTCACACGCTCACCTGCAAAAATTC AGATAATTCCAAGCACGCGCATCGATTCGGTCTTATTACGCATTCGCAAT GGAGGACACAAAAGCTCCAGCGGCAGCGCAGGCGCAAAGTCATCCTTTGG AGGATGTGTCCCTCAATGGGAACGATGACGACAAGCAGACGCCCAAAAAT TGGGTTAAATTCGACGACGAAGCGGATAGCGGTGAAAAAAACAATAACAG TAACGACGGCGATGCCACACAGCAGCAACAACAACAAAACAAGTTAACTC TGCCGCCACCGCCGTCGGTGGTTAGTAGCAACAACAACAGGAGGGCGCGC TCGCGCAGTCCGTCCGCTACAGTAACAACAACCACACCTGTCCAGCGCCC GGCAGTTTCCTCGACCACAGCTGCGACACCGGGCGAAGTGCAGCCGCATG CCCCTCCGCCGGATGTGGCGCCCGCTGTTCTGACAACCGAGAGCACGCAC GTTAATCTGAGTGCATCCGGCAGTGGCATCGTCAGCGGAGCAAGTGCGAA TGCAAGTGCGAGTGGATACGCACCTGGCCCGGTCCGCCATACCCCGCAGC TACCAAACCAAAAAGCCGCCGCCGCCCCCTCTCTATCGTCCGCTGGCGCG GCATCCTCCGGACATCAGCATAATGGAGGTGGCGCCAACGGAACTGGAAT TAGCCAGCCGGCGGACCAGGGATCCGGGATGCGCACAATCGAATTGTCAA CGGGTCGTATACGCGAGGGATTCGCAAATGGCGATGTGATTGTCACACTT CTGCCGGCCAACACGAAGTGGCCGTGGATAACCCCAGCCATATTCCGTCC GGAACTGGTGCCCGAGGAGCTGATGGCTCAGGGTCTGACGCTCACTGTGG AGGACTATGTGAACGCGATGGAGACGCTAGTAAACGACTACCGCTTCACC GTGTACAACATCTGCTACAAGCGCATCCTGGTCTGCTGGATCCTGTTCGC ATTTACGGTTTTGCTGGCCCTGCTCTTTTCCGGACTGCAGGGTGTGGCCC TGTTCGCCCTGGGAGTGGGCTGGCTATTCCTGAACGCGGCGGCCATCTTC CTGTGCATGTGGGTGAAGCTGCGCTTGTCGCGCGGCCTTGAGAAGTGCCT GGCAAGAGTGAACCGGCAGCTAATGCGCCACAAGATCCTGCTGGTGCTGG ACGATCGGGGCCGCATCTCGTGCCACAAGGTCAACCTGTGCTTCATGTAC TTTGATGCCACACAGTGCGTTAATTTCCTGAACGAGTTCCTGGAGCATAC GGAGCAAACTGGTGGCGATGCCATCAAGGCGGGCTGGGAGGCGAAGCTGG ACATTGACCTAAACGATATTGTTATCCAGGGCAGTCAGCCGGTGCGAATG CCCCGCAAGCAGGCCGTGGCCCAGGAGCTGTTTCTGAGCTACCTGCAGCG CTGGGGCAAGGACTTCCTGCGCCGCCGTCTGGATTGGACTGTCCAGGAGG CCGGCGTCCACGAGACGCCCCGCCATCTGCAATCGTCCATCTGTCCGTGC CAATACGAGGAGGAGTTGTTGCGCAACAAGATCAAGATCAGCCTGCAGCA CCGCCACTGCTGCGGCATCAACTGCATGGGCTGCTGGCTCTAATCCCTGA CATGTAATCCTCAAAAAATGTTTCGTTTCTTAGATTGCCGAGAATCTATT AAATGCCTAGCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 13664233..13664825 | 1..595 | 2880 | 99.3 | Plus |
chr2L | 23010047 | chr2L | 13667565..13668088 | 1090..1613 | 2605 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 13666673..13667055 | 592..974 | 1915 | 100 | Plus |
chr2L | 23010047 | chr2L | 13668245..13668546 | 1611..1912 | 1510 | 100 | Plus |
chr2L | 23010047 | chr2L | 13667391..13667507 | 974..1090 | 570 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13665528..13666122 | 1..595 | 2960 | 99.8 | Plus |
2L | 23513712 | 2L | 13668863..13669386 | 1090..1613 | 2605 | 99.8 | Plus |
2L | 23513712 | 2L | 13667971..13668353 | 592..974 | 1915 | 100 | Plus |
2L | 23513712 | 2L | 13669543..13669850 | 1611..1918 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13668689..13668805 | 974..1090 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 13665528..13666122 | 1..595 | 2960 | 99.8 | Plus |
2L | 23513712 | 2L | 13668863..13669386 | 1090..1613 | 2605 | 99.8 | Plus |
2L | 23513712 | 2L | 13667971..13668353 | 592..974 | 1915 | 100 | Plus |
2L | 23513712 | 2L | 13669543..13669850 | 1611..1918 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13668689..13668805 | 974..1090 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2523 | 440..588 | 165 | 63.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1169 | 440..500 | 131 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2834 | 438..496 | 121 | 69.5 | Plus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2306..2338 | 349..381 | 120 | 84.8 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4358..4389 | 350..381 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2676 | 442..497 | 113 | 70.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 13668247..13668546 | 1613..1912 | 100 | Plus | |
chr2L | 13664233..13664666 | 1..436 | 99 | == | Plus |
chr2L | 13664723..13664825 | 493..595 | 100 | -> | Plus |
chr2L | 13666677..13667055 | 596..974 | 100 | -> | Plus |
chr2L | 13667392..13667507 | 975..1090 | 99 | -> | Plus |
chr2L | 13667566..13668087 | 1091..1612 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1545 | 299..1843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1545 | 299..1843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1545 | 299..1843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1545 | 299..1843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1545 | 299..1843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1912 | 1..1912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1912 | 1..1912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 4..1915 | 1..1912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 1..1912 | 1..1912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18507-RA | 4..1915 | 1..1912 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13668690..13668805 | 975..1090 | 100 | -> | Plus |
2L | 13665528..13666122 | 1..595 | 99 | -> | Plus |
2L | 13667975..13668353 | 596..974 | 100 | -> | Plus |
2L | 13668864..13669385 | 1091..1612 | 99 | -> | Plus |
2L | 13669545..13669844 | 1613..1912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13668690..13668805 | 975..1090 | 100 | -> | Plus |
2L | 13665528..13666122 | 1..595 | 99 | -> | Plus |
2L | 13667975..13668353 | 596..974 | 100 | -> | Plus |
2L | 13668864..13669385 | 1091..1612 | 99 | -> | Plus |
2L | 13669545..13669844 | 1613..1912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13668690..13668805 | 975..1090 | 100 | -> | Plus |
2L | 13665528..13666122 | 1..595 | 99 | -> | Plus |
2L | 13667975..13668353 | 596..974 | 100 | -> | Plus |
2L | 13668864..13669385 | 1091..1612 | 99 | -> | Plus |
2L | 13669545..13669844 | 1613..1912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 13665528..13666122 | 1..595 | 99 | -> | Plus |
arm_2L | 13667975..13668353 | 596..974 | 100 | -> | Plus |
arm_2L | 13668690..13668805 | 975..1090 | 100 | -> | Plus |
arm_2L | 13668864..13669385 | 1091..1612 | 99 | -> | Plus |
arm_2L | 13669545..13669844 | 1613..1912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 13665528..13666122 | 1..595 | 99 | -> | Plus |
2L | 13667975..13668353 | 596..974 | 100 | -> | Plus |
2L | 13668690..13668805 | 975..1090 | 100 | -> | Plus |
2L | 13668864..13669385 | 1091..1612 | 99 | -> | Plus |
2L | 13669545..13669844 | 1613..1912 | 100 | Plus |
Translation from 298 to 1842
> RE25285.pep MEDTKAPAAAQAQSHPLEDVSLNGNDDDKQTPKNWVKFDDEADSGEKNNN SNDGDATQQQQQQNKLTLPPPPSVVSSNNNRRARSRSPSATVTTTTPVQR PAVSSTTAATPGEVQPHAPPPDVAPAVLTTESTHVNLSASGSGIVSGASA NASASGYAPGPVRHTPQLPNQKAAAAPSLSSAGAASSGHQHNGGGANGTG ISQPADQGSGMRTIELSTGRIREGFANGDVIVTLLPANTKWPWITPAIFR PELVPEELMAQGLTLTVEDYVNAMETLVNDYRFTVYNICYKRILVCWILF AFTVLLALLFSGLQGVALFALGVGWLFLNAAAIFLCMWVKLRLSRGLEKC LARVNRQLMRHKILLVLDDRGRISCHKVNLCFMYFDATQCVNFLNEFLEH TEQTGGDAIKAGWEAKLDIDLNDIVIQGSQPVRMPRKQAVAQELFLSYLQ RWGKDFLRRRLDWTVQEAGVHETPRHLQSSICPCQYEEELLRNKIKISLQ HRHCCGINCMGCWL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22962-PA | 545 | GF22962-PA | 26..545 | 15..514 | 2075 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23869-PA | 516 | GG23869-PA | 1..516 | 1..514 | 2402 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12998-PA | 596 | GH12998-PA | 7..523 | 10..496 | 1695 | 70.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18507-PA | 514 | CG18507-PA | 1..514 | 1..514 | 2712 | 100 | Plus |
CG18507-PE | 510 | CG18507-PE | 1..494 | 1..499 | 2375 | 92.4 | Plus |
CG18507-PB | 513 | CG18507-PB | 1..499 | 1..507 | 2372 | 91.3 | Plus |
CG18507-PD | 510 | CG18507-PD | 1..489 | 1..494 | 2370 | 93.3 | Plus |
CG18507-PC | 499 | CG18507-PC | 1..489 | 1..494 | 2370 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17671-PA | 543 | GI17671-PA | 21..543 | 14..514 | 1891 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26077-PA | 527 | GL26077-PA | 1..515 | 1..507 | 1891 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28714-PA | 531 | GA28714-PA | 1..531 | 1..514 | 2253 | 83.5 | Plus |
Dpse\GA14966-PA | 530 | GA14966-PA | 1..530 | 1..514 | 2240 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10680-PA | 519 | GM10680-PA | 1..505 | 1..507 | 1947 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23913-PA | 518 | GD23913-PA | 1..518 | 1..514 | 2699 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17866-PA | 543 | GJ17866-PA | 26..543 | 15..514 | 1847 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24505-PA | 529 | GK24505-PA | 4..529 | 2..514 | 1992 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18672-PA | 525 | GE18672-PA | 1..525 | 1..514 | 2603 | 94.9 | Plus |
Translation from 298 to 1842
> RE25285.hyp MEDTKAPAAAQAQSHPLEDVSLNGNDDDKQTPKNWVKFDDEADSGEKNNN SNDGDATQQQQQQNKLTLPPPPSVVSSNNNRRARSRSPSATVTTTTPVQR PAVSSTTAATPGEVQPHAPPPDVAPAVLTTESTHVNLSASGSGIVSGASA NASASGYAPGPVRHTPQLPNQKAAAAPSLSSAGAASSGHQHNGGGANGTG ISQPADQGSGMRTIELSTGRIREGFANGDVIVTLLPANTKWPWITPAIFR PELVPEELMAQGLTLTVEDYVNAMETLVNDYRFTVYNICYKRILVCWILF AFTVLLALLFSGLQGVALFALGVGWLFLNAAAIFLCMWVKLRLSRGLEKC LARVNRQLMRHKILLVLDDRGRISCHKVNLCFMYFDATQCVNFLNEFLEH TEQTGGDAIKAGWEAKLDIDLNDIVIQGSQPVRMPRKQAVAQELFLSYLQ RWGKDFLRRRLDWTVQEAGVHETPRHLQSSICPCQYEEELLRNKIKISLQ HRHCCGINCMGCWL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18507-PA | 514 | CG18507-PA | 1..514 | 1..514 | 2712 | 100 | Plus |
CG18507-PE | 510 | CG18507-PE | 1..494 | 1..499 | 2375 | 92.4 | Plus |
CG18507-PB | 513 | CG18507-PB | 1..499 | 1..507 | 2372 | 91.3 | Plus |
CG18507-PD | 510 | CG18507-PD | 1..489 | 1..494 | 2370 | 93.3 | Plus |
CG18507-PC | 499 | CG18507-PC | 1..489 | 1..494 | 2370 | 93.3 | Plus |