BDGP Sequence Production Resources |
Search the DGRC for RE25411
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 254 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7712-RA |
Protein status: | RE25411.pep: gold |
Preliminary Size: | 458 |
Sequenced Size: | 556 |
Gene | Date | Evidence |
---|---|---|
CG7712 | 2001-12-14 | Blastp of sequenced clone |
CG7712 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7712 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7712 | 2008-04-29 | Release 5.5 accounting |
CG7712 | 2008-08-15 | Release 5.9 accounting |
CG7712 | 2008-12-18 | 5.12 accounting |
556 bp (556 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071209
> RE25411.complete GTCCATTTGTGCGTAGTGAACTGCGGTCACACTGTTCTGCTTGGAGCAAT TTGGTCGTAGGAAAAACAGAAAGAAATAAAAACAAATCAAATGGCCGGAC GTGAAGCCGTGAAGCGAGCCGTACAGCAGGTGCGCCCCATCCTGTCCGTG GACCGCGAGGAGGCCCGTAAGCGTGCCCTCAATCTGTACAAGGCCTGGTA CCGCCAGATTCCCTACATCGTCATGGACTACGACATCCCCATGACCGTGG AGCAGTGTCGGGACAAGCTGCGCGAGGAGTTCGTCAAGCATCGCAATGTG ACCGACATCCGGGTGATCGACATGCTGGTCATCAAGGGCCAAATGGAGCT TAAGGAATCCGTGGAGATCTGGAAGCAGAAGGGCCATATCATGCGCTACT GGAAAGAATCGCAGGATCCCAAGCCCACCGACTTCCTCTCAAAATTCATC CAGGGCGTTAATTAGTTATTCAAATTGAAATAGTTTAAATACAAACTCCG ACAGAGTGTAAAACGAAACAAAGGGAGTTTTGTGCGCTTCAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 6785258..6785477 | 220..1 | 1070 | 99.1 | Minus |
chr2R | 21145070 | chr2R | 6784807..6785012 | 540..335 | 1000 | 99 | Minus |
chr2R | 21145070 | chr2R | 6785065..6785182 | 337..220 | 575 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10897664..10897883 | 220..1 | 1100 | 100 | Minus |
2R | 25286936 | 2R | 10897209..10897419 | 545..335 | 1040 | 99.5 | Minus |
2R | 25286936 | 2R | 10897471..10897588 | 337..220 | 590 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10898863..10899082 | 220..1 | 1100 | 100 | Minus |
2R | 25260384 | 2R | 10898408..10898618 | 545..335 | 1040 | 99.5 | Minus |
2R | 25260384 | 2R | 10898670..10898787 | 337..220 | 590 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 6784807..6785010 | 337..540 | 99 | <- | Minus |
chr2R | 6785066..6785181 | 221..336 | 99 | <- | Minus |
chr2R | 6785258..6785477 | 1..220 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..375 | 91..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..375 | 91..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..375 | 91..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..375 | 91..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..375 | 91..465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..540 | 1..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..540 | 1..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 3..542 | 1..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 1..540 | 1..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7712-RA | 3..542 | 1..540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10897214..10897417 | 337..540 | 100 | <- | Minus |
2R | 10897472..10897587 | 221..336 | 100 | <- | Minus |
2R | 10897664..10897883 | 1..220 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10897214..10897417 | 337..540 | 100 | <- | Minus |
2R | 10897472..10897587 | 221..336 | 100 | <- | Minus |
2R | 10897664..10897883 | 1..220 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10897214..10897417 | 337..540 | 100 | <- | Minus |
2R | 10897472..10897587 | 221..336 | 100 | <- | Minus |
2R | 10897664..10897883 | 1..220 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 6784719..6784922 | 337..540 | 100 | <- | Minus |
arm_2R | 6784977..6785092 | 221..336 | 100 | <- | Minus |
arm_2R | 6785169..6785388 | 1..220 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10898863..10899082 | 1..220 | 100 | Minus | |
2R | 10898413..10898616 | 337..540 | 100 | <- | Minus |
2R | 10898671..10898786 | 221..336 | 100 | <- | Minus |
Translation from 90 to 464
> RE25411.pep MAGREAVKRAVQQVRPILSVDREEARKRALNLYKAWYRQIPYIVMDYDIP MTVEQCRDKLREEFVKHRNVTDIRVIDMLVIKGQMELKESVEIWKQKGHI MRYWKESQDPKPTDFLSKFIQGVN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13389-PA | 124 | GF13389-PA | 1..124 | 1..124 | 653 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22707-PA | 124 | GG22707-PA | 1..124 | 1..124 | 647 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22942-PA | 124 | GH22942-PA | 1..124 | 1..124 | 631 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND-B14-PB | 124 | CG7712-PB | 1..124 | 1..124 | 647 | 100 | Plus |
ND-B14-PA | 124 | CG7712-PA | 1..124 | 1..124 | 647 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18433-PA | 124 | GI18433-PA | 1..124 | 1..124 | 634 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17089-PA | 164 | GL17089-PA | 42..164 | 2..124 | 615 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20535-PA | 124 | GA20535-PA | 1..124 | 1..124 | 617 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20483-PA | 124 | GM20483-PA | 1..124 | 1..124 | 646 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15258-PA | 124 | GD15258-PA | 1..124 | 1..124 | 653 | 100 | Plus |
Dsim\GD15256-PA | 124 | GD15256-PA | 1..124 | 1..124 | 653 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21517-PA | 124 | GJ21517-PA | 1..124 | 1..124 | 622 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15672-PA | 124 | GK15672-PA | 1..124 | 1..124 | 634 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13063-PA | 124 | GE13063-PA | 1..124 | 1..124 | 647 | 98.4 | Plus |
Translation from 90 to 464
> RE25411.hyp MAGREAVKRAVQQVRPILSVDREEARKRALNLYKAWYRQIPYIVMDYDIP MTVEQCRDKLREEFVKHRNVTDIRVIDMLVIKGQMELKESVEIWKQKGHI MRYWKESQDPKPTDFLSKFIQGVN*