BDGP Sequence Production Resources |
Search the DGRC for RE25453
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 254 |
Well: | 53 |
Vector: | pFlc-1 |
Associated Gene/Transcript | MAGE-RA |
Protein status: | RE25453.pep: gold |
Preliminary Size: | 699 |
Sequenced Size: | 955 |
Gene | Date | Evidence |
---|---|---|
CG10059 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10059 | 2002-02-22 | Blastp of sequenced clone |
CG10059 | 2003-01-01 | Sim4 clustering to Release 3 |
MAGE | 2008-04-29 | Release 5.5 accounting |
MAGE | 2008-08-15 | Release 5.9 accounting |
MAGE | 2008-12-18 | 5.12 accounting |
955 bp (955 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089612
> RE25453.complete ACTTTCAAAAGTGCGAAAAAAAACATATGTTCGCTGCATTCTTGTTGAGT TGCATTTTAAATAATCAAATAAATTTGATAAATTGGGAGCTTGTTAATCA AATTAACTCGAAATGGCTAGCACTTCTCGCGCAGCTAGGAGCCAGAATGC CATCCCCTCGCAGGAAGCGCAACAACCCGTCGATGTGGTCGACGCCAAGG TTCGCGCCATTCTAAACTACATCCTTGATCATACCGCCCAGAAGATTCCC ATAAAGGACAAGGATTTGATAGCGGTGGCTGGGGACAAGAGCGAACTGAA GAAACGCCTGCCGCTGGTCACTAATCTGCTGGCCGAAACATTCGGTATAA TACTAACCCCACTGGACGCGACCACCAAGACGTTCATCTGCACTGCGGAG GAGCCGGTGGCCTCCATTCACGAGCTGACGCCGGCTCAACGGCCGCAGTT CACGCTGCTGTATATTATTCTCATGTACATCTTCCTGCGCGGCAACCGCA TCGAGGACTCGAAACTGTACGTTATGCTGGAGATGCTCAACATCTATCCA GACGAAGAACATGGCTACTTCGGCCCCAATCTGCGCAAACAGATCGAGGA GACGTTTGTGAAGCAACAATATCTGAAGCGGGAACGCTCACAGCTAAGTG CTTACGATGATTCCAAGACTTTCTTCCTTTGGGGACCACGTGCCAAGGCG GAGTTCACATTCGAGCAAATGGTGCAATTCGCCTCCAAGCTGCTCAATCA GCATCCCAAGGTCTTCGGCCATCACCTCTCCATGGCCCAAGAAGGAGTAA ACGCGGAGTAGAATACCATTCTATGAATAATTTACTACATTTGATCTAAC AAATTGAAAACCAAACAATATATATAATAATCTAAAATAGAGCCAATTTC CCATTTATCAGCAAGAAAAGAATATTACGATGATCTTTTAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MAGE-RA | 939 | MAGE-RA | 1..939 | 1..939 | 4695 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 2980307..2981245 | 939..1 | 4680 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 7154233..7155176 | 944..1 | 4720 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 6895064..6896007 | 944..1 | 4720 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 4629..4750 | 914..790 | 113 | 57.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2980307..2981245 | 1..939 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..699 | 113..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..699 | 113..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..699 | 113..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..699 | 113..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..699 | 113..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..939 | 1..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..939 | 1..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 5..943 | 1..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 1..939 | 1..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MAGE-RA | 5..943 | 1..939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7154238..7155176 | 1..939 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7154238..7155176 | 1..939 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7154238..7155176 | 1..939 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2979960..2980898 | 1..939 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6895069..6896007 | 1..939 | 100 | Minus |
Translation from 112 to 810
> RE25453.pep MASTSRAARSQNAIPSQEAQQPVDVVDAKVRAILNYILDHTAQKIPIKDK DLIAVAGDKSELKKRLPLVTNLLAETFGIILTPLDATTKTFICTAEEPVA SIHELTPAQRPQFTLLYIILMYIFLRGNRIEDSKLYVMLEMLNIYPDEEH GYFGPNLRKQIEETFVKQQYLKRERSQLSAYDDSKTFFLWGPRAKAEFTF EQMVQFASKLLNQHPKVFGHHLSMAQEGVNAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17319-PA | 234 | GF17319-PA | 1..233 | 1..232 | 911 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25348-PA | 223 | GG25348-PA | 1..222 | 1..232 | 1006 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18586-PA | 267 | GH18586-PA | 1..231 | 1..230 | 703 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MAGE-PA | 232 | CG10059-PA | 1..232 | 1..232 | 1181 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24515-PA | 265 | GI24515-PA | 1..239 | 1..232 | 638 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12195-PA | 241 | GL12195-PA | 1..239 | 1..230 | 738 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10038-PA | 241 | GA10038-PA | 1..239 | 1..230 | 724 | 59.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10502-PA | 233 | GM10502-PA | 1..232 | 1..232 | 1127 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19499-PA | 233 | GD19499-PA | 1..232 | 1..232 | 1141 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22688-PA | 265 | GJ22688-PA | 1..239 | 1..232 | 674 | 58.2 | Plus |
Translation from 112 to 810
> RE25453.hyp MASTSRAARSQNAIPSQEAQQPVDVVDAKVRAILNYILDHTAQKIPIKDK DLIAVAGDKSELKKRLPLVTNLLAETFGIILTPLDATTKTFICTAEEPVA SIHELTPAQRPQFTLLYIILMYIFLRGNRIEDSKLYVMLEMLNIYPDEEH GYFGPNLRKQIEETFVKQQYLKRERSQLSAYDDSKTFFLWGPRAKAEFTF EQMVQFASKLLNQHPKVFGHHLSMAQEGVNAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MAGE-PA | 232 | CG10059-PA | 1..232 | 1..232 | 1181 | 100 | Plus |