Clone RE25571 Report

Search the DGRC for RE25571

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:255
Well:71
Vector:pFlc-1
Associated Gene/TranscriptCG4577-RA
Protein status:RE25571.pep: gold
Preliminary Size:1833
Sequenced Size:2543

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4577 2002-01-01 Sim4 clustering to Release 2
CG4577 2002-04-04 Blastp of sequenced clone
CG4577 2003-01-01 Sim4 clustering to Release 3
CG4577 2008-04-29 Release 5.5 accounting
CG4577 2008-08-15 Release 5.9 accounting
CG4577 2008-12-18 5.12 accounting

Clone Sequence Records

RE25571.complete Sequence

2543 bp (2543 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095077

> RE25571.complete
GTTCATTCAGAACAGTCGAAGTGCGCAGACCACTGGGATCCAAACACCGG
CAGAAACCAGGCCAGGAGTCGAAGTCGACCTCCCACCTCCAGCCAGATCC
GAATCCTATTTGGGACACCACCAGCTAGAGCCAAGTCAAGTGCCGTTTGC
CGTAAACATGCCACGCATCTCGTTGCCCGGCAGCAGCCTGCTGGTAGTCC
TGGCACTGATCCTGTGCCTCAGCCTTCCAATCCGGGCGGTGCCCACCTCC
GTGCTCGCCCAAGACACGGAGCTCTCCACCAGCGCCAACCACAAGCTCCA
GCAGCAGCAGCAACAGCAGCAGCAGCATCACCAGCAGCAGCAGCTCCAGC
AGCAGCAGCAGCAGCAACAGCCGGCCACAGCCAAACGCTCCGAGGAGGCG
AGTGCCGTGCCCACGGCGGACAAGAAGTCGAGTCCGGAAATTGTGCCCGC
TTCCTTTAGCAACGCTCCGTCGGCCCGAAACAGCCCAGTTCCGGTCTCCA
GCCAGCAGCAGGAGCAGCAGCAGGTGCCGTCCGGAGTCTACGCCCTGCCC
TCCAACGAGGAGATCCTGGCCGCCGTAGCGGCCGCCGCCCAGAACAGCCA
ACAGCAGTTGCAGGAGGAGCCCTCCGCCCTGGAGGAGGCGGTGGCCAGCT
CCACGATGCGCAAGCGGGGCATCAATTACGAGTACAATCCGTACTCCGTC
GCCTCCAGCGACTACGGCAGCGATGTGCCCAGTGGCGTTTGGTCCGACGA
CTACGAGGCCGCCGTTCCTGTCAGCTATGGCGAGCGGGATCTCCAGGAGA
TCGATGACTACGTGCCAGAGCGAAGAGTGAGTAGCTCGAGTGCGCGAAAC
AAGGCCTACGACAATTTGCAGAATCTCCTGAACGCCGAGGCCTATCTGGA
GAGCATTCCCCTCTCGGTGCCGCTGACCTATGCCAATCGGAACTACAACG
TGGATGAGCGCAACAAGCGGGGTATCTACTACAACGTGGGCACTCCCGGC
GGCAATGGGGCGAGCAGCCTGGGCAGTGGAAGTGGCTACAACGACGAGGG
TATCAACCTCAACAAATATCGACGATTCAACGACATGCGACTTAAACGCG
ACACCCAGCTCAATCCCGCCGACATGCTGGCCCTGGTTGCCCTGGTGGAG
GCCGGAGAACGGGCGCGCAAGGAGAGCGATGCTGAGAGCTCCGGACCGGT
GCCCATGATACCCTCCGATGACCTGGACTACGCGCCCGCCGGCAGCTGGT
TCGACGTGCCCGTACAGGCGGACTACTACGGCGCCGGAGTGCCGCTGGAC
AACCAGAACCAGGCGATGCCCAAGTACGAGTACGTGCCGCGTCAGCACAA
GTACAGCGGAGTCAATAGCCGATTCGGCTCCTCGAAGCAGCGCTACATGG
TGGCCAAGAAGAAGCGCTCGGTGAACCAGAGCCAATTCATGAACGAACCG
GTGGCGGAGCGCGGATCCGGCTACAATGGCGAGAAGTACTTCTAAGGATC
CCACGCGGAGATAGTCTACGTAGTACTTAATGATAGCCACAGGCCCCACG
AAGAGTATTTCTCGTTTTTTTGAGCATTGAACATATTGAACATAATCCAA
GAAACCAAAATCCAAATTCAATTTCTAATTCAATTATGATAAAGAGCTAG
TGTCAAGGTCAACTCGTGTGCAATTTTTGTGTAGAATTTCACTTTCAAAA
AACCCAATGGCGAGAATTAAACTATTGTTGCATGCAATGTGGTGCGTCAG
GAGCATAATCAATCAGTGTCTAGGATTTTGTCCCACGGAATCCGCACCGA
ACTAAACCGAATCTATATCTACGCCACCTAATCCCTGTAAGAAATCGGTG
TCTATGTACAACTACTGCAATCTGAAATCCAGCGGAACCGCAACTTGTAT
CTGTATCTACTTATCGAACTAGAGGCTTCCCGACTAGTACAAAACGAGAG
AAGAACGTCAACTATGAATATGATTATATATAAAAATATGAATACATCTA
TACATGCATATATCAATCCTAATCGAGCTCAGAAGCGACAAAAGCTCCAC
TAACCGCTTTAATTTAATCTAAACTTATACTAACTAAAGCTAAAGCCAAA
GCCAAGTATTTTGAATGCCATCACATTCCGAACTACACTTTTTATGTAAC
CCCGCCGACTTGGGGACAAACGATCTGACAATTGATGAGAATTTTAATCG
TATTTAGCGAGTATCGCAGCTAATATGTTGGTAAATTATATATATATATA
TATAAATATACGTATACAATATGCAAACAATTTGTGGATAAATTTGTTAA
GAAATGGCTCAGGGCATAAATATTTTAAATATTCTATGCCGACGACGAAG
AGGCGTATTTTTAATTTGAATAAAATTGTCTGACTGTTTTCGGTAATAAT
CAAATATACATACATATGTGTACTATGAATATGGTAAAATAAATTATATT
ATACAGACTAAAATAAAATAGCGTATATATATATGTGTGTGTGTATACAA
TACAGATTATATATAACTATATATATGAAAAAAAAAAAAAAAA

RE25571.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-RA 2943 CG4577-RA 249..2777 1..2529 12645 100 Plus
CG4577.a 2855 CG4577.a 158..2689 1..2529 12590 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1139713..1140867 1371..2527 5530 98.9 Plus
chr2L 23010047 chr2L 1138499..1138948 378..827 2220 99.6 Plus
chr2L 23010047 chr2L 1134566..1134930 1..365 1810 99.7 Plus
chr2L 23010047 chr2L 1139363..1139645 1089..1371 1415 100 Plus
chr2L 23010047 chr2L 1139003..1139266 826..1089 1320 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1139832..1140990 1371..2529 5795 100 Plus
2L 23513712 2L 1138618..1139067 378..827 2250 100 Plus
2L 23513712 2L 1134702..1135081 1..380 1900 100 Plus
2L 23513712 2L 1139482..1139764 1089..1371 1415 100 Plus
2L 23513712 2L 1139122..1139385 826..1089 1320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1139832..1140990 1371..2529 5795 100 Plus
2L 23513712 2L 1138618..1139067 378..827 2250 100 Plus
2L 23513712 2L 1134702..1135081 1..380 1900 100 Plus
2L 23513712 2L 1139482..1139764 1089..1371 1415 100 Plus
2L 23513712 2L 1139122..1139385 826..1089 1320 100 Plus
Blast to na_te.dros performed 2019-03-16 04:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 6842..6959 2394..2513 126 58.3 Plus
G3 4605 G3 G3 4605bp 4484..4550 1963..2031 115 65.2 Plus

RE25571.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:52:17 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1134566..1134863 1..298 100 == Plus
chr2L 1134967..1134978 336..347 100 == Plus
chr2L 1138499..1138948 378..827 99 -> Plus
chr2L 1139005..1139266 828..1089 100 -> Plus
chr2L 1139364..1139644 1090..1370 100 -> Plus
chr2L 1139713..1140736 1371..2398 96 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:55 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..1338 158..1495 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:14:23 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..1338 158..1495 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:43:57 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..1338 158..1495 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:03 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..1338 158..1495 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:52:37 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..1338 158..1495 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:05 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..2527 1..2527 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:14:23 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..2527 1..2527 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:57 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 10..2536 1..2527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:03 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 1..2527 1..2527 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:52:37 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4577-RA 10..2536 1..2527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:17 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1134702..1135081 1..380 100 -> Plus
2L 1138621..1139067 381..827 100 -> Plus
2L 1139124..1139385 828..1089 100 -> Plus
2L 1139483..1139763 1090..1370 100 -> Plus
2L 1139832..1140988 1371..2527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:17 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1134702..1135081 1..380 100 -> Plus
2L 1138621..1139067 381..827 100 -> Plus
2L 1139124..1139385 828..1089 100 -> Plus
2L 1139483..1139763 1090..1370 100 -> Plus
2L 1139832..1140988 1371..2527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:17 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1134702..1135081 1..380 100 -> Plus
2L 1138621..1139067 381..827 100 -> Plus
2L 1139124..1139385 828..1089 100 -> Plus
2L 1139483..1139763 1090..1370 100 -> Plus
2L 1139832..1140988 1371..2527 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:57 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1134702..1135081 1..380 100 -> Plus
arm_2L 1138621..1139067 381..827 100 -> Plus
arm_2L 1139124..1139385 828..1089 100 -> Plus
arm_2L 1139483..1139763 1090..1370 100 -> Plus
arm_2L 1139832..1140988 1371..2527 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:30 Download gff for RE25571.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1134702..1135081 1..380 100 -> Plus
2L 1138621..1139067 381..827 100 -> Plus
2L 1139124..1139385 828..1089 100 -> Plus
2L 1139483..1139763 1090..1370 100 -> Plus
2L 1139832..1140988 1371..2527 100   Plus

RE25571.hyp Sequence

Translation from 0 to 1494

> RE25571.hyp
FIQNSRSAQTTGIQTPAETRPGVEVDLPPPARSESYLGHHQLEPSQVPFA
VNMPRISLPGSSLLVVLALILCLSLPIRAVPTSVLAQDTELSTSANHKLQ
QQQQQQQQHHQQQQLQQQQQQQQPATAKRSEEASAVPTADKKSSPEIVPA
SFSNAPSARNSPVPVSSQQQEQQQVPSGVYALPSNEEILAAVAAAAQNSQ
QQLQEEPSALEEAVASSTMRKRGINYEYNPYSVASSDYGSDVPSGVWSDD
YEAAVPVSYGERDLQEIDDYVPERRVSSSSARNKAYDNLQNLLNAEAYLE
SIPLSVPLTYANRNYNVDERNKRGIYYNVGTPGGNGASSLGSGSGYNDEG
INLNKYRRFNDMRLKRDTQLNPADMLALVALVEAGERARKESDAESSGPV
PMIPSDDLDYAPAGSWFDVPVQADYYGAGVPLDNQNQAMPKYEYVPRQHK
YSGVNSRFGSSKQRYMVAKKKRSVNQSQFMNEPVAERGSGYNGEKYF*

RE25571.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-PA 445 CG4577-PA 1..445 53..497 2274 100 Plus
CG4577-PB 446 CG4577-PB 1..446 53..497 2255 99.6 Plus

RE25571.pep Sequence

Translation from 157 to 1494

> RE25571.pep
MPRISLPGSSLLVVLALILCLSLPIRAVPTSVLAQDTELSTSANHKLQQQ
QQQQQQHHQQQQLQQQQQQQQPATAKRSEEASAVPTADKKSSPEIVPASF
SNAPSARNSPVPVSSQQQEQQQVPSGVYALPSNEEILAAVAAAAQNSQQQ
LQEEPSALEEAVASSTMRKRGINYEYNPYSVASSDYGSDVPSGVWSDDYE
AAVPVSYGERDLQEIDDYVPERRVSSSSARNKAYDNLQNLLNAEAYLESI
PLSVPLTYANRNYNVDERNKRGIYYNVGTPGGNGASSLGSGSGYNDEGIN
LNKYRRFNDMRLKRDTQLNPADMLALVALVEAGERARKESDAESSGPVPM
IPSDDLDYAPAGSWFDVPVQADYYGAGVPLDNQNQAMPKYEYVPRQHKYS
GVNSRFGSSKQRYMVAKKKRSVNQSQFMNEPVAERGSGYNGEKYF*

RE25571.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15163-PA 438 GF15163-PA 8..438 12..445 1502 77.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24767-PA 433 GG24767-PA 25..433 25..445 1788 89.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11173-PA 442 GH11173-PA 30..442 27..445 1191 63.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4577-PA 445 CG4577-PA 1..445 1..445 2274 100 Plus
CG4577-PB 446 CG4577-PB 1..446 1..445 2255 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17976-PA 449 GI17976-PA 13..449 12..445 1170 63.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15562-PA 452 GL15562-PA 32..452 25..445 1470 74.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18271-PA 453 GA18271-PA 32..453 25..445 1478 74.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16794-PA 428 GM16794-PA 1..428 1..445 1883 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23070-PA 447 GD23070-PA 1..447 1..445 1727 84.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19509-PA 431 GJ19509-PA 30..431 29..445 1206 65.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24668-PA 427 GK24668-PA 4..427 10..445 1197 62.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17330-PA 446 GE17330-PA 1..446 1..445 1817 89 Plus