Clone RE25723 Report

Search the DGRC for RE25723

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:257
Well:23
Vector:pFlc-1
Associated Gene/TranscriptCG8173-RA
Protein status:RE25723.pep: gold
Preliminary Size:1252
Sequenced Size:1665

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8173 2001-12-14 Blastp of sequenced clone
CG8173 2002-01-01 Sim4 clustering to Release 2
CG8173 2003-01-01 Sim4 clustering to Release 3
CG8173 2008-04-29 Release 5.5 accounting
CG8173 2008-08-15 Release 5.9 accounting
CG8173 2008-12-18 5.12 accounting

Clone Sequence Records

RE25723.complete Sequence

1665 bp (1665 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071211

> RE25723.complete
ATTACTTAGTAGAGTTTGAGTGCTCTACAAGGCAGTAACAAGAACATTGC
GCTTAGCATCTATTTTGCGATTAATTCCAGTCAAAAGAGACGCCACGGTC
ACTCTATCGCCTAGGACCAAACACAACACCAACACTGTTGCATTCCATTT
ACAGTTTAAACGGTGTTTTGTGCGCGTCGCTTTAATTTTGGTTTAATTGA
ATTTTACTATTGCTGCGATGGACACGCCACGCCGCAAGCTAAGAAATTTG
CACCTGGAGAATGTCCAGAACAGCAGCACTCCCATCAACGTGCCGCCATC
GCCGATGATGAAGACCCTGGGCCACGGCACTGGGATCCGGGTCTACCGCT
TGGACCGCTCGCCTCGTCTCGGCGAAATCCGCTCGCCCTGGGCCGTCAAG
CGGATCACGCAGAACATGCGGGTCAAGAAGGATACACTCTTCAACGAGCG
AATTGTTCACGAGGCCGATATCCTGCGCAAACTGAAGCATCCAAACATCG
TGGGATTCCGTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCA
CTTGAAATGTGCACCACTTCACTGGGCTCCATACTCGAGGAGCGACACGA
CGAGGATCTGGGCCCGTTGCCGGCCAAACATACCTATAAGATGATCATGG
ACGTGGCCCAGGCACTAGACTTTCTTCACAACGAAGCTCACCTCATGCAC
GGCGACCTTAAGTCCTTTAATGTCCTGGTCAAAGGCGAGTTTGAGATTTG
TAAGCTGTGCGATTTTGGAGTCTCTCTTCCGCTGGACGAGCAGGGCGAGG
TTAATTTCCTAAAGAATCCCGGACTGCGCTATGTGGGAACTAACCTCTGG
TGCGCACCGGAGGTCATAGACGAAGTGGATGTTATTGACAGCAAGGCAGA
CATATTCAGCTTTGGCCTGGTTATCTACGAAACCCTTGCTTTGGTGCCTC
CACATACCTTGGAGCTTGATGCAGCACTGGGAGAGGATATGGACAGTTCG
CACGATTTACCCACCGACACGGACAAGCTGCAGTGCAAACAGTTGGACTT
CTCCAGCGATGAAAACAAGAACGGACTACCTTCTGCAATGGAAGAACACA
CAGACAACGATATGAGTCAAGATTATGACGAGGAGGATGATGAGGAGGAG
AAGGAAGAGGAGGAGGAAGACGATGAAGAAGATGATGACACGAAGGAGAA
CGATATCTCTTACTTTACACTGAATAACCTTCATTCCGCCTATGGTACAC
GACCACCATTGCCAGTGGCCTTTCAACTTAGCGACGATTACAACTGCGTC
GTGGAGCTGTTTTATCTGTGCACAAATGCTCTCAGCGAGGATCGTCCAGC
GGCCAAGACCATTTGGCAGTGCCTGGAGAACAATGGCGCAAATGTTGCGA
CAGAAAGCGATTAGACTGATAATCATTCTCAGCCTCCGAACTCCACAATC
TTCCTCTTGAATATAATTTGATTAGATGACTCATTTTTGTTTTGAATGTA
CAATTAATTAGCTATAATTTTTACCCTGTAAGAACAAACCAATTACGGTT
AAAGCCCCAAAACGCGAATGCACACTTAAGCAAATTGTACATATTCAGCA
AGCAAAAGAGTGGTCGAATAAATCGAATCCCCAAATGGAACAAAAACTTA
AAAAAAAAAAAAAAA

RE25723.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-RA 1878 CG8173-RA 163..1810 1..1648 8240 100 Plus
CG8173.a 1666 CG8173.a 495..1666 477..1648 5860 100 Plus
CG8173.a 1666 CG8173.a 1..479 1..479 2395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17596744..17597556 1648..836 4065 100 Minus
chrX 22417052 chrX 17598525..17599001 477..1 2385 100 Minus
chrX 22417052 chrX 17597631..17597991 837..477 1805 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17707401..17708213 1648..836 4065 100 Minus
X 23542271 X 17709182..17709658 477..1 2385 100 Minus
X 23542271 X 17708288..17708648 837..477 1805 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17715499..17716311 1648..836 4065 100 Minus
X 23527363 X 17717280..17717756 477..1 2385 100 Minus
X 23527363 X 17716386..17716746 837..477 1805 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:06:30 has no hits.

RE25723.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:07:21 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17596742..17597555 837..1649 94 <- Minus
chrX 17597632..17597990 478..836 100 <- Minus
chrX 17598525..17599001 1..477 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:04:57 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1197 218..1414 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:48 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1197 218..1414 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:43 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1197 218..1414 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:38:34 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1197 218..1414 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:53 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1197 218..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:45:09 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1648 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:48 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1648 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:43 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1643 6..1648 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:38:36 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1648 1..1648 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:53 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
CG8173-RA 1..1643 6..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:21 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
X 17707399..17708212 837..1649 99 <- Minus
X 17708289..17708647 478..836 100 <- Minus
X 17709182..17709658 1..477 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:21 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
X 17707399..17708212 837..1649 99 <- Minus
X 17708289..17708647 478..836 100 <- Minus
X 17709182..17709658 1..477 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:21 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
X 17707399..17708212 837..1649 99 <- Minus
X 17708289..17708647 478..836 100 <- Minus
X 17709182..17709658 1..477 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:43 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17601432..17602245 837..1649 99 <- Minus
arm_X 17602322..17602680 478..836 100 <- Minus
arm_X 17603215..17603691 1..477 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:15:39 Download gff for RE25723.complete
Subject Subject Range Query Range Percent Splice Strand
X 17715497..17716310 837..1649 99 <- Minus
X 17716387..17716745 478..836 100 <- Minus
X 17717280..17717756 1..477 100   Minus

RE25723.pep Sequence

Translation from 217 to 1413

> RE25723.pep
MDTPRRKLRNLHLENVQNSSTPINVPPSPMMKTLGHGTGIRVYRLDRSPR
LGEIRSPWAVKRITQNMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGV
ITNDEGINTLALEMCTTSLGSILEERHDEDLGPLPAKHTYKMIMDVAQAL
DFLHNEAHLMHGDLKSFNVLVKGEFEICKLCDFGVSLPLDEQGEVNFLKN
PGLRYVGTNLWCAPEVIDEVDVIDSKADIFSFGLVIYETLALVPPHTLEL
DAALGEDMDSSHDLPTDTDKLQCKQLDFSSDENKNGLPSAMEEHTDNDMS
QDYDEEDDEEEKEEEEEDDEEDDDTKENDISYFTLNNLHSAYGTRPPLPV
AFQLSDDYNCVVELFYLCTNALSEDRPAAKTIWQCLENNGANVATESD*

RE25723.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21160-PA 401 GF21160-PA 1..401 1..398 1542 72.6 Plus
Dana\GF10720-PA 985 GF10720-PA 197..356 80..261 182 32.4 Plus
Dana\GF21241-PA 732 GF21241-PA 65..229 77..245 166 26.9 Plus
Dana\Dsor1-PA 396 GF19085-PA 126..299 75..259 164 28 Plus
Dana\GF18291-PA 290 GF18291-PA 40..207 59..245 163 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18164-PA 393 GG18164-PA 1..393 1..398 1815 89.7 Plus
Dere\GG13387-PA 980 GG13387-PA 182..355 68..261 188 31.7 Plus
Dere\GG17602-PA 740 GG17602-PA 63..225 79..245 167 26.6 Plus
Dere\GG11804-PA 503 GG11804-PA 37..228 32..240 166 25.7 Plus
Dere\GG17976-PA 1147 GG17976-PA 183..342 79..246 163 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12078-PA 385 GH12078-PA 1..378 1..393 1416 70.1 Plus
Dgri\GH14621-PA 1013 GH14621-PA 202..363 78..261 182 32.1 Plus
Dgri\GH12443-PA 1053 GH12443-PA 30..224 31..246 178 27.1 Plus
Dgri\GH24478-PA 726 GH24478-PA 68..245 77..258 175 26.9 Plus
Dgri\GH21549-PA 649 GH21549-PA 103..209 132..247 164 37.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-PA 398 CG8173-PA 1..398 1..398 2110 100 Plus
Tao-PH 611 CG14217-PH 30..224 31..246 180 28 Plus
Tao-PJ 615 CG14217-PJ 30..224 31..246 180 28 Plus
Tao-PI 1038 CG14217-PI 30..224 31..246 180 28 Plus
Tao-PF 1039 CG14217-PF 30..224 31..246 180 28 Plus
Tao-PD 1039 CG14217-PD 30..224 31..246 180 28 Plus
Tao-PE 1039 CG14217-PE 30..224 31..246 180 28 Plus
wnd-PD 950 CG8789-PD 152..325 68..261 177 31.7 Plus
wnd-PC 977 CG8789-PC 179..352 68..261 177 31.7 Plus
wnd-PB 977 CG8789-PB 179..352 68..261 177 31.7 Plus
wnd-PA 977 CG8789-PA 179..352 68..261 177 31.7 Plus
Dsor1-PB 393 CG15793-PB 125..303 77..267 168 29.2 Plus
Dsor1-PA 396 CG15793-PA 128..306 77..267 168 29.2 Plus
Pak-PJ 704 CG10295-PJ 433..671 31..300 162 26.3 Plus
Pak-PE 704 CG10295-PE 433..671 31..300 162 26.3 Plus
Pak-PB 704 CG10295-PB 433..671 31..300 162 26.3 Plus
Pak-PA 704 CG10295-PA 433..671 31..300 162 26.3 Plus
Pak-PC 704 CG10295-PC 433..671 31..300 162 26.3 Plus
Pak-PI 840 CG10295-PI 569..807 31..300 162 26.3 Plus
Pak-PH 840 CG10295-PH 569..807 31..300 162 26.3 Plus
Pak-PG 840 CG10295-PG 569..807 31..300 162 26.3 Plus
Pak-PF 840 CG10295-PF 569..807 31..300 162 26.3 Plus
Raf-PE 739 CG2845-PE 408..628 9..246 156 26.4 Plus
Raf-PA 739 CG2845-PA 408..628 9..246 156 26.4 Plus
niki-PA 841 CG10951-PA 150..300 80..242 155 28.9 Plus
Slik-PA 1300 CG4527-PA 82..239 82..247 155 31.2 Plus
Slik-PE 1342 CG4527-PE 82..239 82..247 155 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11083-PA 384 GI11083-PA 1..380 1..398 1517 71.1 Plus
Dmoj\GI22005-PA 1245 GI22005-PA 85..342 15..257 183 26.9 Plus
Dmoj\GI13508-PA 994 GI13508-PA 197..356 80..261 178 33 Plus
Dmoj\GI22202-PA 524 GI22202-PA 35..271 32..276 175 25.9 Plus
Dmoj\GI11217-PA 717 GI11217-PA 70..234 77..245 168 27.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16000-PA 358 GL16000-PA 1..358 1..398 1222 61.3 Plus
Dper\GL26415-PA 330 GL26415-PA 1..329 1..389 1025 53 Plus
Dper\GL20878-PA 640 GL20878-PA 195..354 80..261 190 33 Plus
Dper\GL14583-PA 738 GL14583-PA 71..233 79..245 173 27.7 Plus
Dper\GL16493-PA 396 GL16493-PA 126..340 75..303 166 26.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22809-PA 355 GA22809-PA 1..355 1..398 1224 61.1 Plus
Dpse\GA28854-PA 330 GA28854-PA 1..329 1..389 1014 52.4 Plus
Dpse\GA21324-PA 994 GA21324-PA 195..354 80..261 190 33 Plus
Dpse\GA14417-PA 738 GA14417-PA 71..233 79..245 173 27.7 Plus
Dpse\GA13960-PA 396 GA13960-PA 126..340 75..303 166 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13297-PA 189 GM13297-PA 1..182 1..176 861 89.6 Plus
Dsec\GM17139-PA 980 GM17139-PA 182..355 68..261 188 31.7 Plus
Dsec\GM22414-PA 396 GM22414-PA 126..306 75..267 166 28.4 Plus
Dsec\GM11966-PA 740 GM11966-PA 63..225 79..245 166 26.6 Plus
Dsec\GM11198-PA 998 GM11198-PA 184..343 79..246 163 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17342-PA 414 GD17342-PA 1..414 1..398 1913 91.5 Plus
Dsim\GD12264-PA 980 GD12264-PA 182..355 68..261 188 31.7 Plus
Dsim\Dsor1-PA 336 GD16945-PA 66..246 75..267 166 28.4 Plus
Dsim\GD20136-PA 1223 GD20136-PA 75..323 24..257 163 24.9 Plus
Dsim\phl-PA 739 GD16607-PA 435..628 34..246 162 27.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15766-PA 387 GJ15766-PA 1..372 1..387 1451 70.6 Plus
Dvir\GJ11870-PA 996 GJ11870-PA 200..359 80..261 182 32.4 Plus
Dvir\GJ24323-PA 512 GJ24323-PA 35..226 32..240 180 28.4 Plus
Dvir\GJ14359-PA 1215 GJ14359-PA 88..354 18..268 174 25.8 Plus
Dvir\GJ16859-PA 718 GJ16859-PA 75..239 77..245 172 27.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16200-PA 370 GK16200-PA 5..367 2..395 1340 67.5 Plus
Dwil\GK25814-PA 1017 GK25814-PA 201..360 80..261 181 32.4 Plus
Dwil\GK10114-PA 708 GK10114-PA 73..235 79..245 167 26.7 Plus
Dwil\GK22761-PA 519 GK22761-PA 36..272 32..276 166 27 Plus
Dwil\GK25732-PA 1277 GK25732-PA 161..324 75..246 164 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15575-PA 390 GE15575-PA 1..390 1..398 1850 91.2 Plus
Dyak\GE22480-PA 994 GE22480-PA 196..369 68..261 188 31.7 Plus
Dyak\GE22767-PA 357 GE22767-PA 129..302 68..261 182 31.7 Plus
Dyak\GE17502-PA 740 GE17502-PA 63..225 79..245 168 26.6 Plus
Dyak\GE25154-PA 1217 GE25154-PA 72..320 24..257 163 24.9 Plus

RE25723.hyp Sequence

Translation from 217 to 1413

> RE25723.hyp
MDTPRRKLRNLHLENVQNSSTPINVPPSPMMKTLGHGTGIRVYRLDRSPR
LGEIRSPWAVKRITQNMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGV
ITNDEGINTLALEMCTTSLGSILEERHDEDLGPLPAKHTYKMIMDVAQAL
DFLHNEAHLMHGDLKSFNVLVKGEFEICKLCDFGVSLPLDEQGEVNFLKN
PGLRYVGTNLWCAPEVIDEVDVIDSKADIFSFGLVIYETLALVPPHTLEL
DAALGEDMDSSHDLPTDTDKLQCKQLDFSSDENKNGLPSAMEEHTDNDMS
QDYDEEDDEEEKEEEEEDDEEDDDTKENDISYFTLNNLHSAYGTRPPLPV
AFQLSDDYNCVVELFYLCTNALSEDRPAAKTIWQCLENNGANVATESD*

RE25723.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8173-PA 398 CG8173-PA 1..398 1..398 2110 100 Plus
Tao-PH 611 CG14217-PH 30..224 31..246 180 28 Plus
Tao-PJ 615 CG14217-PJ 30..224 31..246 180 28 Plus
Tao-PI 1038 CG14217-PI 30..224 31..246 180 28 Plus
Tao-PF 1039 CG14217-PF 30..224 31..246 180 28 Plus