BDGP Sequence Production Resources |
Search the DGRC for RE25723
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 257 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8173-RA |
Protein status: | RE25723.pep: gold |
Preliminary Size: | 1252 |
Sequenced Size: | 1665 |
Gene | Date | Evidence |
---|---|---|
CG8173 | 2001-12-14 | Blastp of sequenced clone |
CG8173 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8173 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8173 | 2008-04-29 | Release 5.5 accounting |
CG8173 | 2008-08-15 | Release 5.9 accounting |
CG8173 | 2008-12-18 | 5.12 accounting |
1665 bp (1665 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071211
> RE25723.complete ATTACTTAGTAGAGTTTGAGTGCTCTACAAGGCAGTAACAAGAACATTGC GCTTAGCATCTATTTTGCGATTAATTCCAGTCAAAAGAGACGCCACGGTC ACTCTATCGCCTAGGACCAAACACAACACCAACACTGTTGCATTCCATTT ACAGTTTAAACGGTGTTTTGTGCGCGTCGCTTTAATTTTGGTTTAATTGA ATTTTACTATTGCTGCGATGGACACGCCACGCCGCAAGCTAAGAAATTTG CACCTGGAGAATGTCCAGAACAGCAGCACTCCCATCAACGTGCCGCCATC GCCGATGATGAAGACCCTGGGCCACGGCACTGGGATCCGGGTCTACCGCT TGGACCGCTCGCCTCGTCTCGGCGAAATCCGCTCGCCCTGGGCCGTCAAG CGGATCACGCAGAACATGCGGGTCAAGAAGGATACACTCTTCAACGAGCG AATTGTTCACGAGGCCGATATCCTGCGCAAACTGAAGCATCCAAACATCG TGGGATTCCGTGGCGTTATCACCAATGACGAGGGCATCAACACACTGGCA CTTGAAATGTGCACCACTTCACTGGGCTCCATACTCGAGGAGCGACACGA CGAGGATCTGGGCCCGTTGCCGGCCAAACATACCTATAAGATGATCATGG ACGTGGCCCAGGCACTAGACTTTCTTCACAACGAAGCTCACCTCATGCAC GGCGACCTTAAGTCCTTTAATGTCCTGGTCAAAGGCGAGTTTGAGATTTG TAAGCTGTGCGATTTTGGAGTCTCTCTTCCGCTGGACGAGCAGGGCGAGG TTAATTTCCTAAAGAATCCCGGACTGCGCTATGTGGGAACTAACCTCTGG TGCGCACCGGAGGTCATAGACGAAGTGGATGTTATTGACAGCAAGGCAGA CATATTCAGCTTTGGCCTGGTTATCTACGAAACCCTTGCTTTGGTGCCTC CACATACCTTGGAGCTTGATGCAGCACTGGGAGAGGATATGGACAGTTCG CACGATTTACCCACCGACACGGACAAGCTGCAGTGCAAACAGTTGGACTT CTCCAGCGATGAAAACAAGAACGGACTACCTTCTGCAATGGAAGAACACA CAGACAACGATATGAGTCAAGATTATGACGAGGAGGATGATGAGGAGGAG AAGGAAGAGGAGGAGGAAGACGATGAAGAAGATGATGACACGAAGGAGAA CGATATCTCTTACTTTACACTGAATAACCTTCATTCCGCCTATGGTACAC GACCACCATTGCCAGTGGCCTTTCAACTTAGCGACGATTACAACTGCGTC GTGGAGCTGTTTTATCTGTGCACAAATGCTCTCAGCGAGGATCGTCCAGC GGCCAAGACCATTTGGCAGTGCCTGGAGAACAATGGCGCAAATGTTGCGA CAGAAAGCGATTAGACTGATAATCATTCTCAGCCTCCGAACTCCACAATC TTCCTCTTGAATATAATTTGATTAGATGACTCATTTTTGTTTTGAATGTA CAATTAATTAGCTATAATTTTTACCCTGTAAGAACAAACCAATTACGGTT AAAGCCCCAAAACGCGAATGCACACTTAAGCAAATTGTACATATTCAGCA AGCAAAAGAGTGGTCGAATAAATCGAATCCCCAAATGGAACAAAAACTTA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 17596744..17597556 | 1648..836 | 4065 | 100 | Minus |
chrX | 22417052 | chrX | 17598525..17599001 | 477..1 | 2385 | 100 | Minus |
chrX | 22417052 | chrX | 17597631..17597991 | 837..477 | 1805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 17707401..17708213 | 1648..836 | 4065 | 100 | Minus |
X | 23542271 | X | 17709182..17709658 | 477..1 | 2385 | 100 | Minus |
X | 23542271 | X | 17708288..17708648 | 837..477 | 1805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 17715499..17716311 | 1648..836 | 4065 | 100 | Minus |
X | 23527363 | X | 17717280..17717756 | 477..1 | 2385 | 100 | Minus |
X | 23527363 | X | 17716386..17716746 | 837..477 | 1805 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 17596742..17597555 | 837..1649 | 94 | <- | Minus |
chrX | 17597632..17597990 | 478..836 | 100 | <- | Minus |
chrX | 17598525..17599001 | 1..477 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1197 | 218..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1197 | 218..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1197 | 218..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1197 | 218..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1197 | 218..1414 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1648 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1648 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1643 | 6..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1648 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8173-RA | 1..1643 | 6..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17707399..17708212 | 837..1649 | 99 | <- | Minus |
X | 17708289..17708647 | 478..836 | 100 | <- | Minus |
X | 17709182..17709658 | 1..477 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17707399..17708212 | 837..1649 | 99 | <- | Minus |
X | 17708289..17708647 | 478..836 | 100 | <- | Minus |
X | 17709182..17709658 | 1..477 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17707399..17708212 | 837..1649 | 99 | <- | Minus |
X | 17708289..17708647 | 478..836 | 100 | <- | Minus |
X | 17709182..17709658 | 1..477 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 17601432..17602245 | 837..1649 | 99 | <- | Minus |
arm_X | 17602322..17602680 | 478..836 | 100 | <- | Minus |
arm_X | 17603215..17603691 | 1..477 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 17715497..17716310 | 837..1649 | 99 | <- | Minus |
X | 17716387..17716745 | 478..836 | 100 | <- | Minus |
X | 17717280..17717756 | 1..477 | 100 | Minus |
Translation from 217 to 1413
> RE25723.pep MDTPRRKLRNLHLENVQNSSTPINVPPSPMMKTLGHGTGIRVYRLDRSPR LGEIRSPWAVKRITQNMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGV ITNDEGINTLALEMCTTSLGSILEERHDEDLGPLPAKHTYKMIMDVAQAL DFLHNEAHLMHGDLKSFNVLVKGEFEICKLCDFGVSLPLDEQGEVNFLKN PGLRYVGTNLWCAPEVIDEVDVIDSKADIFSFGLVIYETLALVPPHTLEL DAALGEDMDSSHDLPTDTDKLQCKQLDFSSDENKNGLPSAMEEHTDNDMS QDYDEEDDEEEKEEEEEDDEEDDDTKENDISYFTLNNLHSAYGTRPPLPV AFQLSDDYNCVVELFYLCTNALSEDRPAAKTIWQCLENNGANVATESD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21160-PA | 401 | GF21160-PA | 1..401 | 1..398 | 1542 | 72.6 | Plus |
Dana\GF10720-PA | 985 | GF10720-PA | 197..356 | 80..261 | 182 | 32.4 | Plus |
Dana\GF21241-PA | 732 | GF21241-PA | 65..229 | 77..245 | 166 | 26.9 | Plus |
Dana\Dsor1-PA | 396 | GF19085-PA | 126..299 | 75..259 | 164 | 28 | Plus |
Dana\GF18291-PA | 290 | GF18291-PA | 40..207 | 59..245 | 163 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18164-PA | 393 | GG18164-PA | 1..393 | 1..398 | 1815 | 89.7 | Plus |
Dere\GG13387-PA | 980 | GG13387-PA | 182..355 | 68..261 | 188 | 31.7 | Plus |
Dere\GG17602-PA | 740 | GG17602-PA | 63..225 | 79..245 | 167 | 26.6 | Plus |
Dere\GG11804-PA | 503 | GG11804-PA | 37..228 | 32..240 | 166 | 25.7 | Plus |
Dere\GG17976-PA | 1147 | GG17976-PA | 183..342 | 79..246 | 163 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12078-PA | 385 | GH12078-PA | 1..378 | 1..393 | 1416 | 70.1 | Plus |
Dgri\GH14621-PA | 1013 | GH14621-PA | 202..363 | 78..261 | 182 | 32.1 | Plus |
Dgri\GH12443-PA | 1053 | GH12443-PA | 30..224 | 31..246 | 178 | 27.1 | Plus |
Dgri\GH24478-PA | 726 | GH24478-PA | 68..245 | 77..258 | 175 | 26.9 | Plus |
Dgri\GH21549-PA | 649 | GH21549-PA | 103..209 | 132..247 | 164 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8173-PA | 398 | CG8173-PA | 1..398 | 1..398 | 2110 | 100 | Plus |
Tao-PH | 611 | CG14217-PH | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PJ | 615 | CG14217-PJ | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PI | 1038 | CG14217-PI | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PF | 1039 | CG14217-PF | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PD | 1039 | CG14217-PD | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PE | 1039 | CG14217-PE | 30..224 | 31..246 | 180 | 28 | Plus |
wnd-PD | 950 | CG8789-PD | 152..325 | 68..261 | 177 | 31.7 | Plus |
wnd-PC | 977 | CG8789-PC | 179..352 | 68..261 | 177 | 31.7 | Plus |
wnd-PB | 977 | CG8789-PB | 179..352 | 68..261 | 177 | 31.7 | Plus |
wnd-PA | 977 | CG8789-PA | 179..352 | 68..261 | 177 | 31.7 | Plus |
Dsor1-PB | 393 | CG15793-PB | 125..303 | 77..267 | 168 | 29.2 | Plus |
Dsor1-PA | 396 | CG15793-PA | 128..306 | 77..267 | 168 | 29.2 | Plus |
Pak-PJ | 704 | CG10295-PJ | 433..671 | 31..300 | 162 | 26.3 | Plus |
Pak-PE | 704 | CG10295-PE | 433..671 | 31..300 | 162 | 26.3 | Plus |
Pak-PB | 704 | CG10295-PB | 433..671 | 31..300 | 162 | 26.3 | Plus |
Pak-PA | 704 | CG10295-PA | 433..671 | 31..300 | 162 | 26.3 | Plus |
Pak-PC | 704 | CG10295-PC | 433..671 | 31..300 | 162 | 26.3 | Plus |
Pak-PI | 840 | CG10295-PI | 569..807 | 31..300 | 162 | 26.3 | Plus |
Pak-PH | 840 | CG10295-PH | 569..807 | 31..300 | 162 | 26.3 | Plus |
Pak-PG | 840 | CG10295-PG | 569..807 | 31..300 | 162 | 26.3 | Plus |
Pak-PF | 840 | CG10295-PF | 569..807 | 31..300 | 162 | 26.3 | Plus |
Raf-PE | 739 | CG2845-PE | 408..628 | 9..246 | 156 | 26.4 | Plus |
Raf-PA | 739 | CG2845-PA | 408..628 | 9..246 | 156 | 26.4 | Plus |
niki-PA | 841 | CG10951-PA | 150..300 | 80..242 | 155 | 28.9 | Plus |
Slik-PA | 1300 | CG4527-PA | 82..239 | 82..247 | 155 | 31.2 | Plus |
Slik-PE | 1342 | CG4527-PE | 82..239 | 82..247 | 155 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11083-PA | 384 | GI11083-PA | 1..380 | 1..398 | 1517 | 71.1 | Plus |
Dmoj\GI22005-PA | 1245 | GI22005-PA | 85..342 | 15..257 | 183 | 26.9 | Plus |
Dmoj\GI13508-PA | 994 | GI13508-PA | 197..356 | 80..261 | 178 | 33 | Plus |
Dmoj\GI22202-PA | 524 | GI22202-PA | 35..271 | 32..276 | 175 | 25.9 | Plus |
Dmoj\GI11217-PA | 717 | GI11217-PA | 70..234 | 77..245 | 168 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16000-PA | 358 | GL16000-PA | 1..358 | 1..398 | 1222 | 61.3 | Plus |
Dper\GL26415-PA | 330 | GL26415-PA | 1..329 | 1..389 | 1025 | 53 | Plus |
Dper\GL20878-PA | 640 | GL20878-PA | 195..354 | 80..261 | 190 | 33 | Plus |
Dper\GL14583-PA | 738 | GL14583-PA | 71..233 | 79..245 | 173 | 27.7 | Plus |
Dper\GL16493-PA | 396 | GL16493-PA | 126..340 | 75..303 | 166 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22809-PA | 355 | GA22809-PA | 1..355 | 1..398 | 1224 | 61.1 | Plus |
Dpse\GA28854-PA | 330 | GA28854-PA | 1..329 | 1..389 | 1014 | 52.4 | Plus |
Dpse\GA21324-PA | 994 | GA21324-PA | 195..354 | 80..261 | 190 | 33 | Plus |
Dpse\GA14417-PA | 738 | GA14417-PA | 71..233 | 79..245 | 173 | 27.7 | Plus |
Dpse\GA13960-PA | 396 | GA13960-PA | 126..340 | 75..303 | 166 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13297-PA | 189 | GM13297-PA | 1..182 | 1..176 | 861 | 89.6 | Plus |
Dsec\GM17139-PA | 980 | GM17139-PA | 182..355 | 68..261 | 188 | 31.7 | Plus |
Dsec\GM22414-PA | 396 | GM22414-PA | 126..306 | 75..267 | 166 | 28.4 | Plus |
Dsec\GM11966-PA | 740 | GM11966-PA | 63..225 | 79..245 | 166 | 26.6 | Plus |
Dsec\GM11198-PA | 998 | GM11198-PA | 184..343 | 79..246 | 163 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17342-PA | 414 | GD17342-PA | 1..414 | 1..398 | 1913 | 91.5 | Plus |
Dsim\GD12264-PA | 980 | GD12264-PA | 182..355 | 68..261 | 188 | 31.7 | Plus |
Dsim\Dsor1-PA | 336 | GD16945-PA | 66..246 | 75..267 | 166 | 28.4 | Plus |
Dsim\GD20136-PA | 1223 | GD20136-PA | 75..323 | 24..257 | 163 | 24.9 | Plus |
Dsim\phl-PA | 739 | GD16607-PA | 435..628 | 34..246 | 162 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15766-PA | 387 | GJ15766-PA | 1..372 | 1..387 | 1451 | 70.6 | Plus |
Dvir\GJ11870-PA | 996 | GJ11870-PA | 200..359 | 80..261 | 182 | 32.4 | Plus |
Dvir\GJ24323-PA | 512 | GJ24323-PA | 35..226 | 32..240 | 180 | 28.4 | Plus |
Dvir\GJ14359-PA | 1215 | GJ14359-PA | 88..354 | 18..268 | 174 | 25.8 | Plus |
Dvir\GJ16859-PA | 718 | GJ16859-PA | 75..239 | 77..245 | 172 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16200-PA | 370 | GK16200-PA | 5..367 | 2..395 | 1340 | 67.5 | Plus |
Dwil\GK25814-PA | 1017 | GK25814-PA | 201..360 | 80..261 | 181 | 32.4 | Plus |
Dwil\GK10114-PA | 708 | GK10114-PA | 73..235 | 79..245 | 167 | 26.7 | Plus |
Dwil\GK22761-PA | 519 | GK22761-PA | 36..272 | 32..276 | 166 | 27 | Plus |
Dwil\GK25732-PA | 1277 | GK25732-PA | 161..324 | 75..246 | 164 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15575-PA | 390 | GE15575-PA | 1..390 | 1..398 | 1850 | 91.2 | Plus |
Dyak\GE22480-PA | 994 | GE22480-PA | 196..369 | 68..261 | 188 | 31.7 | Plus |
Dyak\GE22767-PA | 357 | GE22767-PA | 129..302 | 68..261 | 182 | 31.7 | Plus |
Dyak\GE17502-PA | 740 | GE17502-PA | 63..225 | 79..245 | 168 | 26.6 | Plus |
Dyak\GE25154-PA | 1217 | GE25154-PA | 72..320 | 24..257 | 163 | 24.9 | Plus |
Translation from 217 to 1413
> RE25723.hyp MDTPRRKLRNLHLENVQNSSTPINVPPSPMMKTLGHGTGIRVYRLDRSPR LGEIRSPWAVKRITQNMRVKKDTLFNERIVHEADILRKLKHPNIVGFRGV ITNDEGINTLALEMCTTSLGSILEERHDEDLGPLPAKHTYKMIMDVAQAL DFLHNEAHLMHGDLKSFNVLVKGEFEICKLCDFGVSLPLDEQGEVNFLKN PGLRYVGTNLWCAPEVIDEVDVIDSKADIFSFGLVIYETLALVPPHTLEL DAALGEDMDSSHDLPTDTDKLQCKQLDFSSDENKNGLPSAMEEHTDNDMS QDYDEEDDEEEKEEEEEDDEEDDDTKENDISYFTLNNLHSAYGTRPPLPV AFQLSDDYNCVVELFYLCTNALSEDRPAAKTIWQCLENNGANVATESD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8173-PA | 398 | CG8173-PA | 1..398 | 1..398 | 2110 | 100 | Plus |
Tao-PH | 611 | CG14217-PH | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PJ | 615 | CG14217-PJ | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PI | 1038 | CG14217-PI | 30..224 | 31..246 | 180 | 28 | Plus |
Tao-PF | 1039 | CG14217-PF | 30..224 | 31..246 | 180 | 28 | Plus |