Clone RE25907 Report

Search the DGRC for RE25907

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:259
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG9184-RB
Protein status:RE25907.pep: gold
Sequenced Size:733

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9184 2004-01-14 Blastp of sequenced clone
CG9184 2008-04-29 Release 5.5 accounting
CG9184 2008-08-15 Release 5.9 accounting
CG9184 2008-12-18 5.12 accounting

Clone Sequence Records

RE25907.complete Sequence

733 bp (733 high quality bases) assembled on 2004-01-14

GenBank Submission: BT011463

> RE25907.complete
AGGGTATTCCGAGAGAGATCATGGATCGGAGAGTGACTGCGATTGGTTTG
GTTATCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCC
ACTGCAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAAC
AGGTGCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTG
CTGAAGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACC
GCAGTGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTT
GGGGGCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCG
CCGGGACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGG
ATATGGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCT
ATTCTGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAG
GTCGATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCC
TGGCGTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACG
GCAGGAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCC
AGGGCTTGAAGTACTCTAATCCAATCATTGATTAAAACTTAATAAATTGT
GTACCATGTATATTCCGAAAAAAAAAAAAAAAA

RE25907.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184.c 1773 CG9184.c 786..1503 1..718 3575 99.8 Plus
CG9184-RA 1350 CG9184-RA 575..1080 213..718 2530 100 Plus
CG9184.b 1685 CG9184.b 910..1415 213..718 2530 100 Plus
CG9184-RA 1350 CG9184-RA 273..485 1..213 1050 99.5 Plus
CG9184.b 1685 CG9184.b 608..820 1..213 1050 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1321443..1321947 717..213 2435 98.8 Minus
chr3L 24539361 chr3L 1322037..1322199 213..51 815 100 Minus
chr3L 24539361 chr3L 1322248..1322298 51..1 240 98 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1321946..1322451 718..213 2530 100 Minus
3L 28110227 3L 1322541..1322703 213..51 815 100 Minus
3L 28110227 3L 1322752..1322802 51..1 240 98 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1321946..1322451 718..213 2530 100 Minus
3L 28103327 3L 1322541..1322703 213..51 815 100 Minus
3L 28103327 3L 1322752..1322802 51..1 240 98 Minus
Blast to na_te.dros performed on 2019-03-16 19:31:48 has no hits.

RE25907.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:33:02 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1321443..1321946 214..717 98 <- Minus
chr3L 1322037..1322198 52..213 100 <- Minus
chr3L 1322248..1322298 1..51 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:04 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..639 21..659 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:41:59 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..639 21..659 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:42:33 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..639 21..659 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:30:45 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..639 21..659 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:06 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..639 21..659 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:51:29 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..717 1..717 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:41:58 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..717 1..717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:33 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 5..721 1..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:30:45 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..717 1..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:06 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 5..721 1..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:02 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1321947..1322450 214..717 100 <- Minus
3L 1322541..1322702 52..213 100 <- Minus
3L 1322752..1322802 1..51 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:02 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1321947..1322450 214..717 100 <- Minus
3L 1322541..1322702 52..213 100 <- Minus
3L 1322752..1322802 1..51 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:02 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1321947..1322450 214..717 100 <- Minus
3L 1322541..1322702 52..213 100 <- Minus
3L 1322752..1322802 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:33 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1321947..1322450 214..717 100 <- Minus
arm_3L 1322541..1322702 52..213 100 <- Minus
arm_3L 1322752..1322802 1..51 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:18 Download gff for RE25907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1321947..1322450 214..717 100 <- Minus
3L 1322541..1322702 52..213 100 <- Minus
3L 1322752..1322802 1..51 98   Minus

RE25907.hyp Sequence

Translation from 2 to 658

> RE25907.hyp
VIPREIMDRRVTAIGLVILQLLVSGLCFQEKAPLQTSLVSGQARTEKQQQ
VLDDPLGSGRGIDEHLLKTIEDQQHPRQYGYPPQWSPGPPAYPPPPQRPW
GPPPPPGPPPPGPPPPPGPYYNPYYNGYNYYGGYGGYGYGGFGYPGFGGY
SGYPYYPFYRSSTAGEVDNQLPGADGLTSAAIPGVFQGRAVLSHQNFLDG
RNNANVVPLYHLLQMARA*

RE25907.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 212 CG9184-PB 1..212 7..218 1196 100 Plus
CG9184-PA 242 CG9184-PA 1..242 7..218 1155 87.6 Plus

RE25907.pep Sequence

Translation from 20 to 658

> RE25907.pep
MDRRVTAIGLVILQLLVSGLCFQEKAPLQTSLVSGQARTEKQQQVLDDPL
GSGRGIDEHLLKTIEDQQHPRQYGYPPQWSPGPPAYPPPPQRPWGPPPPP
GPPPPGPPPPPGPYYNPYYNGYNYYGGYGGYGYGGFGYPGFGGYSGYPYY
PFYRSSTAGEVDNQLPGADGLTSAAIPGVFQGRAVLSHQNFLDGRNNANV
VPLYHLLQMARA*

RE25907.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10064-PA 205 GF10064-PA 127..205 134..212 198 67.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14608-PA 211 GG14608-PA 1..211 1..212 611 86.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 212 CG9184-PB 1..212 1..212 1196 100 Plus
CG9184-PA 242 CG9184-PA 1..242 1..212 1155 87.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21597-PA 220 GA21597-PA 1..85 1..88 240 67.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14222-PA 205 GM14222-PA 1..205 1..212 981 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13484-PA 212 GD13484-PA 1..212 1..212 1033 96.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20969-PA 211 GE20969-PA 1..211 1..212 608 87.3 Plus