RE25914.complete Sequence
559 bp (559 high quality bases) assembled on 2006-08-30
GenBank Submission: BT029141
> RE25914.complete
GAGTGCCGAACTAAACGCGTGCGGTGCAACAAGTACATTTTATAATTGAA
AACAACCGGATTACAACCAATCGAAATGGACCACAGAACTCGCGTTGTGG
AGGTGGTGCAAGTGCCACCCCAACCCTCGACCACGGTGATCGTGCAACCT
CCTCCGCCGCCGCCTCCTCCCAAGGATAACAGTTGCTGTTGTTGTCCTTG
CTGCCCCTGTTGCTGTCAGTGTGGCGAATGCTGTTGCTGCTGCACCATCA
TGTGAAAGACGAAGGTGCCCGCAGGCAAAGGACCTCAGAACCCCTAATTC
GTTACGTTAAATTAACTTTCTATGTCTATGGAGGCCGCAAACAATTCACA
CAGTTTTTTCGTGCAATAAAATTTTACGATTCGTTATAAATAACTCTGTG
TAGGGCTCACACTGTGGTTGCCATTTTTTTTGTGGCGAAGGGAACACGCT
TGGTAACATATTGTCTTACATAAATCCCAATGCGAAAGTACCACAATATA
ATAAAAAGCCAAATTTAATAACATCCCACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
RE25914.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34198-RA | 450 | CG34198-RA | 1..450 | 2..451 | 2250 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 15569641..15570168 | 529..2 | 2625 | 99.8 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:44:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19682441..19682973 | 534..2 | 2665 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 19683640..19684172 | 534..2 | 2665 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 19:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2432 | 243..183 | 170 | 75.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2658 | 243..182 | 157 | 72.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2421 | 243..182 | 156 | 73.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6838 | 243..180 | 151 | 73.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6805 | 243..180 | 149 | 70.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6860 | 243..182 | 148 | 71 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1093..1154 | 243..182 | 148 | 71 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6823 | 243..180 | 139 | 70.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2384 | 242..180 | 137 | 71.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2444 | 243..177 | 137 | 67.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1580 | 245..180 | 132 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6794 | 243..182 | 132 | 71 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6903 | 242..181 | 130 | 67.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1069..1133 | 243..182 | 128 | 70.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6874 | 243..180 | 122 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6893 | 245..182 | 122 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6913 | 243..180 | 122 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2526 | 253..182 | 121 | 67.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2834 | 243..177 | 119 | 64.2 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 648..728 | 149..230 | 119 | 62.2 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 883..967 | 133..223 | 116 | 63.7 | Plus |
TART-A | 13424 | TART-A 13424bp | 10423..10478 | 246..193 | 113 | 69.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2879 | 244..151 | 112 | 62 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6538..6585 | 243..198 | 109 | 72.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2870 | 242..180 | 108 | 63.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6763 | 215..180 | 108 | 77.8 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 56..115 | 502..444 | 108 | 66.7 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 6895..6954 | 502..444 | 108 | 66.7 | Minus |
RE25914.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:34:41 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 15569641..15569926 | 244..529 | 100 | == | Minus |
chr2R | 15569989..15570168 | 1..181 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:06 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..180 | 76..255 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:44:31 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..180 | 76..255 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:12:52 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..180 | 76..255 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:25:26 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..180 | 76..255 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:58 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..180 | 76..255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:52:44 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..450 | 2..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:44:31 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..450 | 2..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:12:52 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 4..532 | 1..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:25:26 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 1..450 | 2..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:58 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34198-RA | 4..532 | 1..529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:41 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19682446..19682973 | 1..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:41 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19682446..19682973 | 1..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:34:41 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19682446..19682973 | 1..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:12:52 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15569951..15570478 | 1..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:58:22 Download gff for
RE25914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19683645..19684172 | 1..529 | 99 | | Minus |
RE25914.hyp Sequence
Translation from 75 to 254
> RE25914.hyp
MDHRTRVVEVVQVPPQPSTTVIVQPPPPPPPPKDNSCCCCPCCPCCCQCG
ECCCCCTIM*
RE25914.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34198-PA | 59 | CG34198-PA | 1..59 | 1..59 | 377 | 100 | Plus |
RE25914.pep Sequence
Translation from 75 to 254
> RE25914.pep
MDHRTRVVEVVQVPPQPSTTVIVQPPPPPPPPKDNSCCCCPCCPCCCQCG
ECCCCCTIM*
RE25914.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG20894-PA | 59 | GG20894-PA | 1..59 | 1..59 | 266 | 100 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34198-PA | 59 | CG34198-PA | 1..59 | 1..59 | 377 | 100 | Plus |