BDGP Sequence Production Resources |
Search the DGRC for RE26079
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 260 |
Well: | 79 |
Vector: | pFlc-1 |
Associated Gene/Transcript | DNApol-alpha50-RA |
Protein status: | RE26079.pep: gold |
Sequenced Size: | 1578 |
Gene | Date | Evidence |
---|---|---|
CG7108 | 2001-12-14 | Blastp of sequenced clone |
CG7108 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7083 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7108 | 2003-01-01 | Sim4 clustering to Release 3 |
DNApol-alpha50 | 2008-04-29 | Release 5.5 accounting |
DNApol-alpha50 | 2008-08-15 | Release 5.9 accounting |
DNApol-alpha50 | 2008-12-18 | 5.12 accounting |
1578 bp (1578 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071217
> RE26079.complete AGTCATACAAAAACAGCTATTATTTACTTGCCCAGTGCCAGGAGTCGTGC GATATAAACTACATAAAAAGTGTATAATTAAACGAAGATAAAAAGCAAAA ACTGTTTAGGGCGAAGTATAAAGCCTTGCGGATCCAAAGTTAACTGCTGA TTTTCCAAGAACAACAGTTAAGATCAAAAATTTCTTAAAATGCCCGAACA AGTCACAGATCAGGAGAACCAGGCTCCACAGCAGCAGACTACTGCTGTGC ATGCCTACAATCCCGAAGTCCTGCAGGATATGTTGCCCGTGTATTACAGG CGCCTCTTTCCCCACCTGCCCTTCTACCGTTGGCTATCGTATGGATCATC CGAGGATGCTATCTTTTCCAATCGTGAAATTTCCTTTACACTGCAGGACG ATATCTACATACGTTACCTCTGCTTTGATACCCAAGCTGAATTGGAAAAG GAGATCTGCTCGAGGAATCCTATTAAGATTGACATAGGACCAGTAATGCA TTCCAAACCCAAAAACCATCGTTCAATTCCTGGCGGCTTAACGCCCGTAC AACGTGAACTCGTTTTTGATATAGATATGACGGATTACGACGAGGTGCGT ACCTGTTGCTCTGGAGCAGGGGTATGCCTGAAATGCTGGAAGTTTATGGT GCTGGCTGCCAGGGTTTTGGATGTCGCTTTGCGCGAGGATTTCGGTTTCG AGCACATAATCTGGATTTTCTCAGGTAGACGAGGTATCCATTGCTGGGTT TGCGACTACCAAGCCCGTCACTTGGACGGACGTGGTCGCTATGCTGTGGC GGAATACCTTAACATTATTACCTATGCCAGTTTCGCGGGCGGCAATTCAC CCAGATGTTCAATGGGAGACCGACCGCATCATAGCCTAAAGAGAGCCTTA AAGATAGTGGAGCCCATGTTCGAGGAGATTGTACTAGAGGATCAGAATCT TTTTGGAACTCCCAAGGGAGTTACCAAACTTCTTAACATGGTCCACGATG ACGCTGCGCGTGGCGAACTAGAATCTTATATGCAAAAGAATTTGGAGGAT GGAGCACACTCGCGACTCGTTTGGGAGAGCTTCATTAAGTACGCCAACTC TATGAGAACATCCACGACAAGTGCCTGGAGTCGCAAGCTGAAGAACATTG TAGCCGAAATCCAGCTTGGACTGCTCTATCCTCGTTTGGACATCAATGTC ACTAGGGGATTCAATCATTTGCTAAAGGCACCGTTTTGCATTCATCCAGC CACTGGAAAAGTGTGCGTTCCGTTTAGTGTGAGTGCTGTGGCCAAGTTTG ATCCCACCACAGTGCCGACGATCACCCAGTTGCTTCACGAGATCAACGCT TTCGATGATAAGAGCAAGAGCTACATGGAGGCGCCGGAGGATAAGAGCCG CATCAAGGATCACAAGAAGACTAGCATGTTCAAGGGTGTCGTGGTTTTCG AGGAGTTCCTGCGAAAACTGGAGCGCAGCCAGAAATCTGCCAGCTTGCAG TTTTGATTCTAATTTTACAAACTAACATAAGAAAATAAAAGGTTAATGAA TATTTCAGTATGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNApol-alpha50-RA | 1564 | DNApol-alpha50-RA | 1..1564 | 1..1564 | 7790 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8335219..8336436 | 346..1563 | 5985 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 8334998..8335166 | 181..349 | 845 | 100 | Plus |
chr3L | 24539361 | chr3L | 8332361..8332539 | 1..180 | 705 | 95.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8332361..8332539 | 1..180 | 95 | -> | Plus |
chr3L | 8334998..8335166 | 181..349 | 100 | -> | Plus |
chr3L | 8335223..8336436 | 350..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1317 | 190..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1317 | 190..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1317 | 190..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1317 | 190..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1317 | 190..1506 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1563 | 1..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1563 | 1..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 7..1569 | 1..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 1..1563 | 1..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DNApol-alpha50-RA | 7..1569 | 1..1563 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8342966..8343134 | 181..349 | 100 | -> | Plus |
3L | 8340320..8340499 | 1..180 | 98 | -> | Plus |
3L | 8343191..8344404 | 350..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8342966..8343134 | 181..349 | 100 | -> | Plus |
3L | 8340320..8340499 | 1..180 | 98 | -> | Plus |
3L | 8343191..8344404 | 350..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8342966..8343134 | 181..349 | 100 | -> | Plus |
3L | 8340320..8340499 | 1..180 | 98 | -> | Plus |
3L | 8343191..8344404 | 350..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8336066..8336234 | 181..349 | 100 | -> | Plus |
arm_3L | 8333420..8333599 | 1..180 | 98 | -> | Plus |
arm_3L | 8336291..8337504 | 350..1563 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8336291..8337504 | 350..1563 | 100 | Plus | |
3L | 8333420..8333599 | 1..180 | 98 | -> | Plus |
3L | 8336066..8336234 | 181..349 | 100 | -> | Plus |
Translation from 189 to 1505
> RE26079.pep MPEQVTDQENQAPQQQTTAVHAYNPEVLQDMLPVYYRRLFPHLPFYRWLS YGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIG PVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCW KFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGR YAVAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLE DQNLFGTPKGVTKLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIK YANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFC IHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPE DKSRIKDHKKTSMFKGVVVFEEFLRKLERSQKSASLQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10290-PA | 438 | GF10290-PA | 1..438 | 1..438 | 2110 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14305-PA | 436 | GG14305-PA | 2..436 | 4..438 | 2273 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15058-PA | 434 | GH15058-PA | 1..434 | 1..438 | 1852 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNApol-alpha50-PA | 438 | CG7108-PA | 1..438 | 1..438 | 2327 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12823-PA | 434 | GI12823-PA | 1..434 | 1..438 | 1873 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24698-PA | 438 | GL24698-PA | 1..438 | 1..438 | 2009 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20108-PA | 438 | GA20108-PA | 1..438 | 1..438 | 2006 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25047-PA | 438 | GM25047-PA | 1..438 | 1..438 | 2355 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14084-PA | 438 | GD14084-PA | 1..438 | 1..438 | 2367 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12966-PA | 434 | GJ12966-PA | 1..434 | 1..438 | 1900 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11955-PA | 435 | GK11955-PA | 1..435 | 1..438 | 1895 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20733-PA | 438 | GE20733-PA | 1..438 | 1..438 | 2295 | 95.2 | Plus |
Translation from 189 to 1505
> RE26079.hyp MPEQVTDQENQAPQQQTTAVHAYNPEVLQDMLPVYYRRLFPHLPFYRWLS YGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIG PVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCW KFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGR YAVAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLE DQNLFGTPKGVTKLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIK YANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFC IHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPE DKSRIKDHKKTSMFKGVVVFEEFLRKLERSQKSASLQF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNApol-alpha50-PA | 438 | CG7108-PA | 1..438 | 1..438 | 2327 | 100 | Plus |