Clone RE26079 Report

Search the DGRC for RE26079

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:260
Well:79
Vector:pFlc-1
Associated Gene/TranscriptDNApol-alpha50-RA
Protein status:RE26079.pep: gold
Sequenced Size:1578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7108 2001-12-14 Blastp of sequenced clone
CG7108 2002-01-01 Sim4 clustering to Release 2
CG7083 2002-01-01 Sim4 clustering to Release 2
CG7108 2003-01-01 Sim4 clustering to Release 3
DNApol-alpha50 2008-04-29 Release 5.5 accounting
DNApol-alpha50 2008-08-15 Release 5.9 accounting
DNApol-alpha50 2008-12-18 5.12 accounting

Clone Sequence Records

RE26079.complete Sequence

1578 bp (1578 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071217

> RE26079.complete
AGTCATACAAAAACAGCTATTATTTACTTGCCCAGTGCCAGGAGTCGTGC
GATATAAACTACATAAAAAGTGTATAATTAAACGAAGATAAAAAGCAAAA
ACTGTTTAGGGCGAAGTATAAAGCCTTGCGGATCCAAAGTTAACTGCTGA
TTTTCCAAGAACAACAGTTAAGATCAAAAATTTCTTAAAATGCCCGAACA
AGTCACAGATCAGGAGAACCAGGCTCCACAGCAGCAGACTACTGCTGTGC
ATGCCTACAATCCCGAAGTCCTGCAGGATATGTTGCCCGTGTATTACAGG
CGCCTCTTTCCCCACCTGCCCTTCTACCGTTGGCTATCGTATGGATCATC
CGAGGATGCTATCTTTTCCAATCGTGAAATTTCCTTTACACTGCAGGACG
ATATCTACATACGTTACCTCTGCTTTGATACCCAAGCTGAATTGGAAAAG
GAGATCTGCTCGAGGAATCCTATTAAGATTGACATAGGACCAGTAATGCA
TTCCAAACCCAAAAACCATCGTTCAATTCCTGGCGGCTTAACGCCCGTAC
AACGTGAACTCGTTTTTGATATAGATATGACGGATTACGACGAGGTGCGT
ACCTGTTGCTCTGGAGCAGGGGTATGCCTGAAATGCTGGAAGTTTATGGT
GCTGGCTGCCAGGGTTTTGGATGTCGCTTTGCGCGAGGATTTCGGTTTCG
AGCACATAATCTGGATTTTCTCAGGTAGACGAGGTATCCATTGCTGGGTT
TGCGACTACCAAGCCCGTCACTTGGACGGACGTGGTCGCTATGCTGTGGC
GGAATACCTTAACATTATTACCTATGCCAGTTTCGCGGGCGGCAATTCAC
CCAGATGTTCAATGGGAGACCGACCGCATCATAGCCTAAAGAGAGCCTTA
AAGATAGTGGAGCCCATGTTCGAGGAGATTGTACTAGAGGATCAGAATCT
TTTTGGAACTCCCAAGGGAGTTACCAAACTTCTTAACATGGTCCACGATG
ACGCTGCGCGTGGCGAACTAGAATCTTATATGCAAAAGAATTTGGAGGAT
GGAGCACACTCGCGACTCGTTTGGGAGAGCTTCATTAAGTACGCCAACTC
TATGAGAACATCCACGACAAGTGCCTGGAGTCGCAAGCTGAAGAACATTG
TAGCCGAAATCCAGCTTGGACTGCTCTATCCTCGTTTGGACATCAATGTC
ACTAGGGGATTCAATCATTTGCTAAAGGCACCGTTTTGCATTCATCCAGC
CACTGGAAAAGTGTGCGTTCCGTTTAGTGTGAGTGCTGTGGCCAAGTTTG
ATCCCACCACAGTGCCGACGATCACCCAGTTGCTTCACGAGATCAACGCT
TTCGATGATAAGAGCAAGAGCTACATGGAGGCGCCGGAGGATAAGAGCCG
CATCAAGGATCACAAGAAGACTAGCATGTTCAAGGGTGTCGTGGTTTTCG
AGGAGTTCCTGCGAAAACTGGAGCGCAGCCAGAAATCTGCCAGCTTGCAG
TTTTGATTCTAATTTTACAAACTAACATAAGAAAATAAAAGGTTAATGAA
TATTTCAGTATGCAAAAAAAAAAAAAAA

RE26079.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha50-RA 1564 DNApol-alpha50-RA 1..1564 1..1564 7790 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8335219..8336436 346..1563 5985 99.4 Plus
chr3L 24539361 chr3L 8334998..8335166 181..349 845 100 Plus
chr3L 24539361 chr3L 8332361..8332539 1..180 705 95.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8343187..8344405 346..1564 6080 99.9 Plus
3L 28110227 3L 8340320..8340499 1..180 870 98.9 Plus
3L 28110227 3L 8342966..8343134 181..349 845 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8336287..8337505 346..1564 6080 99.9 Plus
3L 28103327 3L 8333420..8333599 1..180 870 98.8 Plus
3L 28103327 3L 8336066..8336234 181..349 845 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:18:45 has no hits.

RE26079.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:19:45 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8332361..8332539 1..180 95 -> Plus
chr3L 8334998..8335166 181..349 100 -> Plus
chr3L 8335223..8336436 350..1563 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:13 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1317 190..1506 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:50 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1317 190..1506 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:44:03 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1317 190..1506 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:08 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1317 190..1506 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:03 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1317 190..1506 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:36:33 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1563 1..1563 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:50 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1563 1..1563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:44:03 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 7..1569 1..1563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:08 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 1..1563 1..1563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:03 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha50-RA 7..1569 1..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:45 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8342966..8343134 181..349 100 -> Plus
3L 8340320..8340499 1..180 98 -> Plus
3L 8343191..8344404 350..1563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:45 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8342966..8343134 181..349 100 -> Plus
3L 8340320..8340499 1..180 98 -> Plus
3L 8343191..8344404 350..1563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:45 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8342966..8343134 181..349 100 -> Plus
3L 8340320..8340499 1..180 98 -> Plus
3L 8343191..8344404 350..1563 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:44:03 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8336066..8336234 181..349 100 -> Plus
arm_3L 8333420..8333599 1..180 98 -> Plus
arm_3L 8336291..8337504 350..1563 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:58 Download gff for RE26079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8336291..8337504 350..1563 100   Plus
3L 8333420..8333599 1..180 98 -> Plus
3L 8336066..8336234 181..349 100 -> Plus

RE26079.pep Sequence

Translation from 189 to 1505

> RE26079.pep
MPEQVTDQENQAPQQQTTAVHAYNPEVLQDMLPVYYRRLFPHLPFYRWLS
YGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIG
PVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCW
KFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGR
YAVAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLE
DQNLFGTPKGVTKLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIK
YANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFC
IHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPE
DKSRIKDHKKTSMFKGVVVFEEFLRKLERSQKSASLQF*

RE26079.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10290-PA 438 GF10290-PA 1..438 1..438 2110 85.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14305-PA 436 GG14305-PA 2..436 4..438 2273 94.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15058-PA 434 GH15058-PA 1..434 1..438 1852 75.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha50-PA 438 CG7108-PA 1..438 1..438 2327 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12823-PA 434 GI12823-PA 1..434 1..438 1873 76.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24698-PA 438 GL24698-PA 1..438 1..438 2009 82.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20108-PA 438 GA20108-PA 1..438 1..438 2006 82.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25047-PA 438 GM25047-PA 1..438 1..438 2355 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14084-PA 438 GD14084-PA 1..438 1..438 2367 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12966-PA 434 GJ12966-PA 1..434 1..438 1900 78.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11955-PA 435 GK11955-PA 1..435 1..438 1895 78.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20733-PA 438 GE20733-PA 1..438 1..438 2295 95.2 Plus

RE26079.hyp Sequence

Translation from 189 to 1505

> RE26079.hyp
MPEQVTDQENQAPQQQTTAVHAYNPEVLQDMLPVYYRRLFPHLPFYRWLS
YGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIG
PVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCW
KFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGR
YAVAEYLNIITYASFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLE
DQNLFGTPKGVTKLLNMVHDDAARGELESYMQKNLEDGAHSRLVWESFIK
YANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFC
IHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPE
DKSRIKDHKKTSMFKGVVVFEEFLRKLERSQKSASLQF*

RE26079.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha50-PA 438 CG7108-PA 1..438 1..438 2327 100 Plus