Clone RE26232 Report

Search the DGRC for RE26232

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:262
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG17036-RA
Protein status:RE26232.pep: gold
Sequenced Size:1682

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17036 2007-09-25 DGC5 pick
CG17036 2008-04-29 Release 5.5 accounting
CG17036 2008-04-29 Picked prior to 5.5
CG17036 2008-08-15 Release 5.9 accounting
CG17036 2008-12-18 5.12 accounting

Clone Sequence Records

RE26232.complete Sequence

1682 bp assembled on 2007-12-12

GenBank Submission: BT031341

> RE26232.complete
GGTTGCCGGCTGGCGTTCATCGCGTTGGTTACGACACTTATCAATTGGCG
AAACAACTGGCGCCGGATTGGAGCTTGGAGTTTCGAGTCTCCATGCGAAC
AGCCCACCTGGTATCGCAATTTACGACATGAAGAGCTGGCTGAAGATCTC
GCTGCTGCTGTGCACGTTTGGCTTTTTCCGGGAGTTTCGACCTTCGGAGC
CGTACGTCACAGAGTACCTAGCCTCGGATTATGGCAACCTGACGACGGAT
CAAATCTATCAGGATGTGTATCCCTTCGGCACGTACTCGGTGCTGGCCCA
GCTGGTAATTGTGTTCCTCATCACAGATCTGGTGAGGTACAAACCGGTTA
TCGTGCTATCGGCACTGGCTGGCATTACCCTGTTCTCCATGCTTATCTGG
ACGGAAACCGTGGGAATGCTGCAGGTGGCCCAAGTGTTTTTTGGCACCTT
TACGGCCGCTGAGGTGGCCTACTACACGTACATGTACGCCAAGGTCAACA
AGGAGCAGTATCAGGTAGTCACGGGCCACACGCGAGCTGCCATCTTGAGC
GGCAAGTTCCTCGGCGGCCTGTTTGCCCAGATTTTGGTGTCCACCGATAG
CATGGATTACCGGCAGCTGCACTACCTCTCGCTGGCCACGCAGCTAATCT
CCCTGGCCGTGTCCCTGTTCCTGCCCAGTGTGCCGCGTAGCCTCTACTTC
TACGCGGGTTCCGAGAAGATTACCATTGCCGACGGAGAAGAGACCTCACC
AAAGTTCTCCTTTGCCAACGCATGCCGCCTGCTGTGGTACCACCTCGTTA
GTTCCTACTCCAATCCCGTCGTGCTGCAGTGGAGCATATGGTGGGCATTG
GCCACCTGTGGTCAAGTTCAAGTGATCTCCTACATCCAGTTCCTGTGGAA
AGAGGTGGCACCGAATAAGCTCAGTGTTTACAATGGCGGAGTGGAGGCCG
TGGCCACGCTGCTGGGTGCTATTGGAGCCATTCTGGCGGGCCTGCTGAAC
TCCAATAAGCGACGGGGATCGTATATGATGGGCATATCCATCTGTGCCGC
TGCCCTGGGCGCTCTGCTCATCTATGCCGCCAAGACGCAGTTGATCTGGG
TGGCCTACGTGAACTATGTGCTTTTCTGCACCGTATTCTTCTTCATCATC
ACGGTGGCGGGTGCCGTGGTGGCCGAGAATCTGGTGGAGGACAGTTTCGG
CTTGATCTTCGGTATCAATACGTTGGTGGGTCTGATCCTGCAGACTATTC
TGACCGTTGCGGTTGTGGAGCGAGTTGGATTCGCTCTGGAGCCGCGGGAT
CAGTACGTGGTTTACGGTAGCTACTTTGTGGTCTTGGGTGGAATATCCAT
AATTGGGTCTATCTGCGTGAAACTGTTTTGCAGGACTAACAAGTCGAGTG
TGGAAAATGTGGTTTCTTTAACATAAGATAATATAGGATTTTACACAAAT
CAAAACAGGACGAAATGTGCAAGTTTGTAAATACAGGACTTCTTATTTAC
TATCTTATTTATTCAAACAACATAGTATATAAGAAATTCCATCAATTAAA
CAAACTAGTACAAAGGTAAAAAGTTAAATCAGTTGTTGAGCAAAGAATTT
GCTTTCCATAAAGTTAAACTTTACAGAAATAAAACATAAATGAAAGTCTA
AGCTACTATTAAAAAGAAAAAAAAAAAAAAAA

RE26232.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17036-RA 1835 CG17036-RA 171..1832 2..1663 8295 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12698475..12699346 873..2 4330 99.8 Minus
chr2L 23010047 chr2L 12697606..12698412 1663..872 3775 98.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12699769..12700640 873..2 4345 99.9 Minus
2L 23513712 2L 12698915..12699706 1663..872 3960 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12699769..12700640 873..2 4345 99.8 Minus
2L 23513712 2L 12698915..12699706 1663..872 3960 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:15:58 has no hits.

RE26232.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:16:46 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12697603..12697723 1546..1666 98 -> Minus
chr2L 12697740..12698412 872..1545 99 <- Minus
chr2L 12698477..12699346 1..871 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:18 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 1..1299 128..1426 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:15 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 1..1299 128..1426 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:58:24 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 1..1299 128..1426 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:34 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 1..1299 128..1426 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:11:43 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 1..1299 128..1426 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:01:14 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 106..1622 1..1517 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:15 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 106..1622 1..1517 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:58:24 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 4..1663 1..1660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:34 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 106..1622 1..1517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:43 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
CG17036-RA 4..1663 1..1660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:46 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12698912..12699706 872..1666 99 <- Minus
2L 12699771..12700640 1..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:46 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12698912..12699706 872..1666 99 <- Minus
2L 12699771..12700640 1..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:16:46 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12698912..12699706 872..1666 99 <- Minus
2L 12699771..12700640 1..871 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:58:24 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12698912..12699706 872..1666 99 <- Minus
arm_2L 12699771..12700640 1..871 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:30 Download gff for RE26232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12698912..12699706 872..1666 99 <- Minus
2L 12699771..12700640 1..871 99   Minus

RE26232.hyp Sequence

Translation from 0 to 1425

> RE26232.hyp
VAGWRSSRWLRHLSIGETTGAGLELGVSSLHANSPPGIAIYDMKSWLKIS
LLLCTFGFFREFRPSEPYVTEYLASDYGNLTTDQIYQDVYPFGTYSVLAQ
LVIVFLITDLVRYKPVIVLSALAGITLFSMLIWTETVGMLQVAQVFFGTF
TAAEVAYYTYMYAKVNKEQYQVVTGHTRAAILSGKFLGGLFAQILVSTDS
MDYRQLHYLSLATQLISLAVSLFLPSVPRSLYFYAGSEKITIADGEETSP
KFSFANACRLLWYHLVSSYSNPVVLQWSIWWALATCGQVQVISYIQFLWK
EVAPNKLSVYNGGVEAVATLLGAIGAILAGLLNSNKRRGSYMMGISICAA
ALGALLIYAAKTQLIWVAYVNYVLFCTVFFFIITVAGAVVAENLVEDSFG
LIFGINTLVGLILQTILTVAVVERVGFALEPRDQYVVYGSYFVVLGGISI
IGSICVKLFCRTNKSSVENVVSLT*

RE26232.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17036-PB 432 CG17036-PB 1..432 43..474 2192 100 Plus
CG17036-PA 432 CG17036-PA 1..432 43..474 2192 100 Plus
CG6574-PA 444 CG6574-PA 1..434 43..463 995 45.2 Plus
CG14694-PA 446 CG14694-PA 1..429 43..458 915 44.1 Plus

RE26232.pep Sequence

Translation from 127 to 1425

> RE26232.pep
MKSWLKISLLLCTFGFFREFRPSEPYVTEYLASDYGNLTTDQIYQDVYPF
GTYSVLAQLVIVFLITDLVRYKPVIVLSALAGITLFSMLIWTETVGMLQV
AQVFFGTFTAAEVAYYTYMYAKVNKEQYQVVTGHTRAAILSGKFLGGLFA
QILVSTDSMDYRQLHYLSLATQLISLAVSLFLPSVPRSLYFYAGSEKITI
ADGEETSPKFSFANACRLLWYHLVSSYSNPVVLQWSIWWALATCGQVQVI
SYIQFLWKEVAPNKLSVYNGGVEAVATLLGAIGAILAGLLNSNKRRGSYM
MGISICAAALGALLIYAAKTQLIWVAYVNYVLFCTVFFFIITVAGAVVAE
NLVEDSFGLIFGINTLVGLILQTILTVAVVERVGFALEPRDQYVVYGSYF
VVLGGISIIGSICVKLFCRTNKSSVENVVSLT*

RE26232.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15658-PA 427 GF15658-PA 1..426 1..427 1720 76.8 Plus
Dana\GF16177-PA 443 GF16177-PA 1..440 1..427 905 44.5 Plus
Dana\GF16180-PA 409 GF16180-PA 1..399 1..382 851 44.1 Plus
Dana\GF16179-PA 443 GF16179-PA 1..424 1..404 829 39.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10243-PA 432 GG10243-PA 1..432 1..432 2079 92.4 Plus
Dere\GG17259-PA 444 GG17259-PA 1..444 1..430 926 45.7 Plus
Dere\GG17260-PA 445 GG17260-PA 1..419 1..404 904 45.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10121-PA 429 GH10121-PA 1..428 1..424 1482 67.8 Plus
Dgri\GH18741-PA 450 GH18741-PA 1..449 1..431 944 44.7 Plus
Dgri\GH18742-PA 447 GH18742-PA 4..441 3..427 877 44.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17036-PB 432 CG17036-PB 1..432 1..432 2192 100 Plus
CG17036-PA 432 CG17036-PA 1..432 1..432 2192 100 Plus
CG6574-PA 444 CG6574-PA 1..434 1..421 995 45.2 Plus
CG14694-PA 446 CG14694-PA 1..429 1..416 915 44.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14499-PA 433 GI14499-PA 1..429 1..423 1531 69 Plus
Dmoj\GI24657-PA 437 GI24657-PA 1..428 1..423 946 46.7 Plus
Dmoj\GI24658-PA 442 GI24658-PA 3..428 2..409 862 46.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19735-PA 432 GL19735-PA 1..426 1..424 1664 74.9 Plus
Dper\GL19736-PA 426 GL19736-PA 1..424 1..422 1660 75.3 Plus
Dper\GL12063-PA 453 GL12063-PA 1..453 1..430 872 42.2 Plus
Dper\GL12064-PA 450 GL12064-PA 1..450 1..426 845 44.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14288-PA 432 GA14288-PA 1..426 1..424 1665 74.9 Plus
Dpse\GA28920-PA 426 GA28920-PA 1..424 1..422 1653 74.8 Plus
Dpse\GA19694-PA 453 GA19694-PA 1..453 1..430 874 42.4 Plus
Dpse\GA13183-PA 450 GA13183-PA 1..423 1..404 848 45.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26031-PA 432 GM26031-PA 1..432 1..432 2160 95.6 Plus
Dsec\GM26143-PA 444 GM26143-PA 1..441 1..427 940 45.2 Plus
Dsec\GM26144-PA 446 GM26144-PA 1..438 1..422 899 43.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22102-PA 432 GD22102-PA 1..432 1..432 2167 95.6 Plus
Dsim\GD20696-PA 444 GD20696-PA 1..441 1..427 934 44.5 Plus
Dsim\GD20697-PA 446 GD20697-PA 1..438 1..422 879 43.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16277-PA 398 GJ16277-PA 1..383 1..380 1400 71 Plus
Dvir\GJ24031-PA 457 GJ24031-PA 1..452 1..427 921 44.3 Plus
Dvir\GJ24032-PA 441 GJ24032-PA 4..441 3..420 893 45 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14666-PA 438 GK14666-PA 1..433 1..423 1578 71.8 Plus
Dwil\GK13288-PA 431 GK13288-PA 1..431 1..429 947 45.6 Plus
Dwil\GK13289-PA 449 GK13289-PA 4..441 3..401 797 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12099-PA 432 GE12099-PA 1..432 1..432 2088 92.6 Plus
Dyak\GE24660-PA 444 GE24660-PA 1..441 1..427 925 45.1 Plus
Dyak\GE24661-PA 446 GE24661-PA 1..438 1..422 898 43.5 Plus