RE26296.complete Sequence
397 bp (397 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071218
> RE26296.complete
AACGGTCCAAAACGGAAAGATCTAAAGTGAACAAGCCATCCAAGATGCGA
GCTGCTATCGTGTTTGTCGTTGTGATTTTCGCACTCCTCAGTGTCCTGGA
GGCCGTGCCCGCTCCCCAGTTCGGATATGGTGGCTTCGGAGGCGGATACC
CCGGATACGGCGGATTCGGAGGCGGATATCCTGGCTACGGCGGCTTCGGT
GGCGGATATCCTGGCTACGGTGGCTTTAGGCGCGGCGGATTCGGCGGAGC
CAGTGCCTCGGCCTCGTCCTCGGCCTCCGCTGGCGGATTCGGCGGTGGCT
TCTACGGATAGAAAGTCGAGAAGATGATTAACCCTAAGCCTGTTCAATTC
AAATAAACCAAATAAATATTCTTGTGACTCCAAAAAAAAAAAAAAAA
RE26296.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9877-RA | 383 | CG9877-RA | 1..383 | 1..383 | 1900 | 99.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 18972341..18972721 | 381..1 | 1875 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 18972496..18972570 | 196..122 | 240 | 88 | Minus |
chr2R | 21145070 | chr2R | 18972526..18972600 | 226..152 | 240 | 88 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23085879..23086261 | 383..1 | 1900 | 99.7 | Minus |
2R | 25286936 | 2R | 23086036..23086110 | 196..122 | 240 | 88 | Minus |
2R | 25286936 | 2R | 23086066..23086140 | 226..152 | 240 | 88 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 23087078..23087460 | 383..1 | 1900 | 99.7 | Minus |
Blast to na_te.dros performed on 2019-03-15 16:21:50 has no hits.
RE26296.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:22:58 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 18972341..18972721 | 1..381 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:19 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..267 | 45..311 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:39:41 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..267 | 45..311 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:01:01 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..267 | 45..311 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:16:52 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..267 | 45..311 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:31 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..267 | 45..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:44:44 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..381 | 1..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:39:41 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..381 | 1..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:01 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 8..388 | 1..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:16:53 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 1..381 | 1..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:31 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9877-RA | 8..388 | 1..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:58 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23085881..23086261 | 1..381 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:58 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23085881..23086261 | 1..381 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:58 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23085881..23086261 | 1..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:01 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18973404..18973784 | 1..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:52:37 Download gff for
RE26296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23087098..23087478 | 1..381 | 99 | | Minus |
RE26296.hyp Sequence
Translation from 2 to 310
> RE26296.hyp
QSKTERSKVNKPSKMRAAIVFVVVIFALLSVLEAVPAPQFGYGGFGGGYP
GYGGFGGGYPGYGGFGGGYPGYGGFRRGGFGGASASASSSASAGGFGGGF
YG*
RE26296.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9877-PA | 88 | CG9877-PA | 1..88 | 15..102 | 479 | 100 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..88 | 15..102 | 175 | 44.4 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..88 | 15..102 | 175 | 44.4 | Plus |
CG7294-PA | 127 | CG7294-PA | 4..108 | 22..99 | 170 | 44.8 | Plus |
Listericin-PA | 121 | CG9080-PA | 55..119 | 40..98 | 169 | 61.5 | Plus |
CG7294-PA | 127 | CG7294-PA | 49..127 | 40..102 | 134 | 44.3 | Plus |
RE26296.pep Sequence
Translation from 44 to 310
> RE26296.pep
MRAAIVFVVVIFALLSVLEAVPAPQFGYGGFGGGYPGYGGFGGGYPGYGG
FGGGYPGYGGFRRGGFGGASASASSSASAGGFGGGFYG*
RE26296.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9877-PA | 88 | CG9877-PA | 1..88 | 1..88 | 479 | 100 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..88 | 1..88 | 175 | 44.4 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..88 | 1..88 | 175 | 44.4 | Plus |
CG7294-PA | 127 | CG7294-PA | 4..108 | 8..85 | 170 | 44.8 | Plus |
Listericin-PA | 121 | CG9080-PA | 55..119 | 26..84 | 169 | 61.5 | Plus |
CG9757-PB | 127 | CG9757-PB | 56..127 | 24..88 | 164 | 50 | Plus |
CG9757-PA | 127 | CG9757-PA | 56..127 | 24..88 | 164 | 50 | Plus |
CG9269-PA | 146 | CG9269-PA | 48..114 | 27..88 | 162 | 49.3 | Plus |
CG17108-PA | 342 | CG17108-PA | 274..342 | 27..88 | 161 | 58.3 | Plus |
CG5172-PC | 106 | CG5172-PC | 1..84 | 1..88 | 158 | 44.6 | Plus |
CG5172-PD | 172 | CG5172-PD | 1..84 | 1..88 | 158 | 44.6 | Plus |
CG34281-PA | 106 | CG34281-PA | 14..80 | 17..86 | 152 | 47.5 | Plus |
CG7296-PB | 161 | CG7296-PB | 78..142 | 24..84 | 152 | 57.6 | Plus |
CG7296-PA | 161 | CG7296-PA | 78..142 | 24..84 | 152 | 57.6 | Plus |
CG7299-PC | 177 | CG7299-PC | 75..147 | 27..85 | 150 | 56.2 | Plus |
CG7299-PA | 177 | CG7299-PA | 75..147 | 27..85 | 150 | 56.2 | Plus |
CG7296-PB | 161 | CG7296-PB | 88..161 | 27..88 | 149 | 49.3 | Plus |
CG7296-PA | 161 | CG7296-PA | 88..161 | 27..88 | 149 | 49.3 | Plus |
CG14191-PA | 193 | CG14191-PA | 77..163 | 15..88 | 147 | 37.9 | Plus |
TwdlT-PA | 286 | CG5812-PA | 38..99 | 29..88 | 147 | 57.8 | Plus |
CG14191-PA | 193 | CG14191-PA | 36..99 | 29..88 | 146 | 48.5 | Plus |
CG14191-PA | 193 | CG14191-PA | 56..137 | 26..88 | 146 | 43.9 | Plus |
CG8160-PA | 212 | CG8160-PA | 52..114 | 23..86 | 145 | 50.8 | Plus |
CG17738-PA | 110 | CG17738-PA | 51..110 | 25..88 | 144 | 50 | Plus |
TwdlT-PA | 286 | CG5812-PA | 50..112 | 29..85 | 141 | 55.6 | Plus |
CG7296-PB | 161 | CG7296-PB | 42..105 | 24..85 | 138 | 54.4 | Plus |
CG7296-PA | 161 | CG7296-PA | 42..105 | 24..85 | 138 | 54.4 | Plus |
CG15282-PB | 79 | CG15282-PB | 3..78 | 7..82 | 138 | 45.3 | Plus |
CG15282-PC | 79 | CG15282-PC | 3..78 | 7..82 | 138 | 45.3 | Plus |
CG15282-PA | 79 | CG15282-PA | 3..78 | 7..82 | 138 | 45.3 | Plus |
sqd-PD | 178 | CG16901-PD | 85..152 | 25..85 | 138 | 45.6 | Plus |
sqd-PB | 344 | CG16901-PB | 251..318 | 25..85 | 138 | 45.6 | Plus |
CG5172-PD | 172 | CG5172-PD | 39..100 | 27..88 | 137 | 50.8 | Plus |
CG14191-PA | 193 | CG14191-PA | 52..125 | 27..86 | 137 | 44.6 | Plus |
CG7296-PB | 161 | CG7296-PB | 48..111 | 24..85 | 135 | 55.1 | Plus |
CG7296-PA | 161 | CG7296-PA | 48..111 | 24..85 | 135 | 55.1 | Plus |
CG7299-PC | 177 | CG7299-PC | 3..117 | 11..88 | 135 | 40 | Plus |
CG7299-PA | 177 | CG7299-PA | 3..117 | 11..88 | 135 | 40 | Plus |
CG15597-PB | 149 | CG15597-PB | 39..124 | 27..85 | 135 | 44.2 | Plus |
Edg91-PB | 151 | CG7539-PB | 62..144 | 27..88 | 135 | 44.6 | Plus |
Edg91-PA | 159 | CG7539-PA | 70..152 | 27..88 | 135 | 44.6 | Plus |
CG7294-PA | 127 | CG7294-PA | 49..127 | 26..88 | 134 | 44.3 | Plus |
CG8160-PA | 212 | CG8160-PA | 4..96 | 8..88 | 134 | 38.1 | Plus |
CG4440-PB | 79 | CG4440-PB | 1..79 | 1..88 | 133 | 38.5 | Plus |
CG4440-PA | 79 | CG4440-PA | 1..79 | 1..88 | 133 | 38.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 49..111 | 27..88 | 132 | 51.4 | Plus |
CG8157-PA | 113 | CG8157-PA | 49..111 | 27..88 | 132 | 51.4 | Plus |
CG14326-PA | 137 | CG14326-PA | 88..137 | 21..68 | 132 | 58.8 | Plus |
CG17107-PC | 96 | CG17107-PC | 3..91 | 7..85 | 131 | 41.1 | Plus |
CG17107-PB | 96 | CG17107-PB | 3..91 | 7..85 | 131 | 41.1 | Plus |
CG17107-PA | 96 | CG17107-PA | 3..91 | 7..85 | 131 | 41.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11608-PA | 88 | GE11608-PA | 1..88 | 1..88 | 343 | 96.6 | Plus |