Clone RE26473 Report

Search the DGRC for RE26473

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:264
Well:73
Vector:pFlc-1
Associated Gene/TranscriptCG15382-RA
Protein status:RE26473.pep: gold
Preliminary Size:474
Sequenced Size:1046

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15382 2001-12-14 Blastp of sequenced clone
CG15382 2002-01-01 Sim4 clustering to Release 2
CG15382 2003-01-01 Sim4 clustering to Release 3
CG15382 2008-04-29 Release 5.5 accounting
CG15382 2008-08-15 Release 5.9 accounting
CG15382 2008-12-18 5.12 accounting

Clone Sequence Records

RE26473.complete Sequence

1046 bp (1046 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071223

> RE26473.complete
AGTTCCTTCTCGACAGTCTAATCATGAAGTACCGCATGTTGAATAAACGC
AAACAGGCGACTCCCTCGCCAGTAAGAGATTCCGACGCAGCCGACGTAGC
CATGGCCAACCACAGTGCTCTGGAACTGGAGGCGGCTGCGGCTCTCTTGT
TGCTCCGCTACCAATACGATCGACAAGTGTGCAATAACATTATAACCTAC
ACGGAGTCCTGTTCCCCGACTCCACCGCCGGCAGTTGCTGACAACACGAC
GCCAAAAGATCAGACTGTTCGTCCGCCAGTCGCCAGCCAGCCGCTGAAGA
AGCGCTCCATACCATCGCACATCCTCCGCAGATCCCTGACTCCGGCCAAA
TCCGAGACTTCAGTGAGCAACAAGTCGATAGTCAAGGCCAAGACGAGGAC
TCCAATTCCCAGTAAGGAGCGAAACTGCAACAGGACCTTGCTTAAGTCCT
GCAGAAATATGATTCGAGAGTTTTTGGACAATCAGGAGTTTATCTAAAAA
AAAAAGTTTAACTATGTATCCTAGGATAACCGCCTGAAACCAATTCTACA
TTTGTAATTTTACACAAATCAAGATTTTAGAAATCTTCGCAAAAAACGCC
ACAGTGAATTGCACGATTGCAGAAAAGATCGAAACGAAATCCTTAAACAA
ATGTAGCCCAGTATATAACAGTCCCGAGAAAGATGAAGGCGATCGATCCT
TGGGATCTTGGATTTCAGTTTTCAATTTATTTATTGCATATAAATTTGTT
TCCTTTTTTATACATATATAAATTATGTATTGATCGAAAGATAACGTTTT
CAATGGAAGAACAGGTATTGTGGCGACACTAGAGTGCTAATTATTAGCTA
TTGGCGGTGTTTAAACTTAAGGCGTACGAAAAACAAATAGAAAATTAACT
TTAGCGTAGATCTACACAATAATTAATAATTACAGTTGCACTACAGGCTA
ATTGTATGAACGTGCAGCGATGATATCTTCTCCTAACTCTGTTCATTCCG
TTTAATGTAATTAATAAAGTGCTTCAAATGTAAAAAAAAAAAAAAA

RE26473.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-RA 1032 CG15382-RA 1..1032 1..1032 5160 100 Plus
aop-RA 4266 aop-RA 3959..4266 1032..725 1540 100 Minus
aop.a 4580 aop.a 4273..4580 1032..725 1540 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2155491..2156521 1..1031 5080 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2155760..2156791 1..1032 5160 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2155760..2156791 1..1032 5160 100 Plus
Blast to na_te.dros performed 2019-03-15 22:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 5078..5157 785..704 135 67.9 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6495..6569 783..709 131 67.1 Minus

RE26473.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:42:46 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2155491..2156521 1..1031 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:32 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..474 24..497 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:21 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..474 24..497 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:26 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..474 24..497 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:33 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..474 24..497 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:05 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..474 24..497 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:42:59 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..1031 1..1031 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:20 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..1031 1..1031 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:26 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 8..1038 1..1031 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:33 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 1..1031 1..1031 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:05 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
CG15382-RA 8..1038 1..1031 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:46 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2155760..2156790 1..1031 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:46 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2155760..2156790 1..1031 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:46 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2155760..2156790 1..1031 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:26 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2155760..2156790 1..1031 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:00 Download gff for RE26473.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2155760..2156790 1..1031 100   Plus

RE26473.hyp Sequence

Translation from 2 to 496

> RE26473.hyp
FLLDSLIMKYRMLNKRKQATPSPVRDSDAADVAMANHSALELEAAAALLL
LRYQYDRQVCNNIITYTESCSPTPPPAVADNTTPKDQTVRPPVASQPLKK
RSIPSHILRRSLTPAKSETSVSNKSIVKAKTRTPIPSKERNCNRTLLKSC
RNMIREFLDNQEFI*

RE26473.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-PA 157 CG15382-PA 1..157 8..164 803 100 Plus

RE26473.pep Sequence

Translation from 23 to 496

> RE26473.pep
MKYRMLNKRKQATPSPVRDSDAADVAMANHSALELEAAAALLLLRYQYDR
QVCNNIITYTESCSPTPPPAVADNTTPKDQTVRPPVASQPLKKRSIPSHI
LRRSLTPAKSETSVSNKSIVKAKTRTPIPSKERNCNRTLLKSCRNMIREF
LDNQEFI*

RE26473.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14604-PA 157 GF14604-PA 1..157 1..157 578 76.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24833-PA 157 GG24833-PA 1..157 1..157 698 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10277-PA 202 GH10277-PA 38..202 45..157 175 35.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15382-PA 157 CG15382-PA 1..157 1..157 803 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15746-PA 178 GI15746-PA 1..178 1..157 191 41.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18706-PA 166 GL18706-PA 1..166 1..157 359 59.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13689-PA 166 GA13689-PA 1..166 1..157 360 59.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23740-PA 157 GM23740-PA 1..157 1..157 796 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23135-PA 157 GD23135-PA 1..157 1..157 716 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10220-PA 148 GJ10220-PA 36..148 45..157 226 53 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14999-PA 216 GK14999-PA 115..216 71..157 277 59.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17965-PA 157 GE17965-PA 1..157 1..157 708 94.9 Plus