BDGP Sequence Production Resources |
Search the DGRC for RE26525
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 265 |
Well: | 25 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11672-RA |
Protein status: | RE26525.pep: gold |
Preliminary Size: | 642 |
Sequenced Size: | 1116 |
Gene | Date | Evidence |
---|---|---|
CG11672 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11672 | 2002-05-21 | Blastp of sequenced clone |
CG11672 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11672 | 2008-04-29 | Release 5.5 accounting |
CG11672 | 2008-08-15 | Release 5.9 accounting |
CG11672 | 2008-12-18 | 5.12 accounting |
1116 bp (1116 high quality bases) assembled on 2002-05-21
GenBank Submission: AY118380
> RE26525.complete GGGAAATATAACAGAAAGATGATGAGTCAAACTCTGGGAGTACTTGCTCT GCTTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGA TGGAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAAT CTGGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGA GGAGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCC TGACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAAC CAGTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGA GCTCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGG GAAGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGA GTACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATT GCTGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCT GTTTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATG CACAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCA AGTGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCG ACTATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCATAGTGGACCGAC CCTTCCCGTAAGCAATAGTCCTAAGAGAGAACCCAGGCAAAAACAGCCAA TGGCAAATTTATGCACCCGCAAGATGACAGGGGCCGAGGACTCGCCACAT CCTGTTCACTTATTGCTTATGCATGACATTTATTTGACAAGTTTTTGATT GATTTTACAGCTGCTGCAGTCGATCTGGTACAGCTATCAGCATATTTGCA GGCACAGTGAAGCCTTTTTTAAAGTCTGGCTTGGAATTGAAATAAAATCA ATTTCAAATCACTATGTTCTTATAAAACGCTAAGAGGCGTGTGTTAAACC AAGGAATTTACACATTTTAAAATGATCAATAAATAGTGAAGTAAATTACC AAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4115426..4116455 | 70..1100 | 99 | <- | Minus |
chr3R | 4116518..4116585 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..723 | 19..741 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..723 | 19..741 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..723 | 19..741 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..723 | 19..741 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..723 | 19..741 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..1097 | 2..1100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..1097 | 2..1100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 13..1110 | 1..1100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 1..1097 | 2..1100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11672-RA | 13..1110 | 1..1100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8289406..8290435 | 70..1100 | 99 | <- | Minus |
3R | 8290498..8290565 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8289406..8290435 | 70..1100 | 99 | <- | Minus |
3R | 8290498..8290565 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8289406..8290435 | 70..1100 | 99 | <- | Minus |
3R | 8290498..8290565 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4115128..4116157 | 70..1100 | 99 | <- | Minus |
arm_3R | 4116220..4116287 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8030237..8031266 | 70..1100 | 99 | <- | Minus |
3R | 8031329..8031396 | 1..69 | 98 | Minus |
Translation from 3 to 740
> RE26525.hyp KYNRKMMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNL AEIAVSVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQ LVVSNPDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARV QEFVQQIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMH NASLILVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQS*
Translation from 18 to 740
> RE26525.pep MMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNLAEIAV SVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQLVVSN PDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARVQEFVQ QIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMHNASLI LVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16677-PA | 242 | GF16677-PA | 1..242 | 2..239 | 795 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17464-PA | 240 | GG17464-PA | 1..240 | 1..240 | 1083 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23393-PA | 245 | GH23393-PA | 1..244 | 2..237 | 464 | 44.1 | Plus |
Dgri\GH18915-PA | 245 | GH18915-PA | 1..244 | 2..237 | 464 | 44.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11672-PB | 240 | CG11672-PB | 1..240 | 1..240 | 1210 | 100 | Plus |
CG11672-PA | 240 | CG11672-PA | 1..240 | 1..240 | 1210 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23415-PA | 253 | GI23415-PA | 1..252 | 2..237 | 468 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24128-PA | 162 | GL24128-PA | 1..159 | 83..237 | 506 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11135-PA | 244 | GA11135-PA | 34..241 | 34..237 | 688 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26358-PA | 238 | GM26358-PA | 1..238 | 1..240 | 1138 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20880-PA | 238 | GD20880-PA | 1..238 | 1..240 | 1186 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10621-PA | 243 | GJ10621-PA | 37..242 | 35..237 | 464 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11709-PA | 241 | GK11709-PA | 1..240 | 2..240 | 660 | 53.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24863-PA | 240 | GE24863-PA | 1..240 | 1..240 | 1000 | 88.8 | Plus |