Clone RE26525 Report

Search the DGRC for RE26525

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:265
Well:25
Vector:pFlc-1
Associated Gene/TranscriptCG11672-RA
Protein status:RE26525.pep: gold
Preliminary Size:642
Sequenced Size:1116

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11672 2002-01-01 Sim4 clustering to Release 2
CG11672 2002-05-21 Blastp of sequenced clone
CG11672 2003-01-01 Sim4 clustering to Release 3
CG11672 2008-04-29 Release 5.5 accounting
CG11672 2008-08-15 Release 5.9 accounting
CG11672 2008-12-18 5.12 accounting

Clone Sequence Records

RE26525.complete Sequence

1116 bp (1116 high quality bases) assembled on 2002-05-21

GenBank Submission: AY118380

> RE26525.complete
GGGAAATATAACAGAAAGATGATGAGTCAAACTCTGGGAGTACTTGCTCT
GCTTTTGCTGACTTTGGCAGACTGCCAAGAAGTCGGCTATGAAACAAAGA
TGGAGACAGAGACTACAAACTATGGACCTGTTACCATGGTTGTGGACAAT
CTGGCAGAGATTGCCGTAAGTGTCAGCGACGACACCTCCATTCAGTTGGA
GGAGAAAATAAATCGCACTCGGCAAAATATTGCCGGTAACATTGAGGTCC
TGACCGCCAATGCTATGGCCGAACTAAGTGATGTGATCTATGAGACAAAC
CAGTTAGTGGTGTCCAATCCCGATTGCAACCCAGCCTGGAGCCTGGATGA
GCTCAATGAAAATGTGACCCATCAGCTGGGTGGGTGTACGGAAGACTTGG
GAAGCCTTTTGGAAGACTTCCGTCTGGAGAGTCAACTGGCTTTGGCCAGA
GTACAGGAATTCGTACAGCAGATTGCCCACTTGCCGGCCAAGTGCCAATT
GCTGGGGGCTTCCCCGCTTAATCCTCTAGCTTCAGCTGGCGGAAGTGTCT
GTTTCATTAACGCGATGGCGGAAATCAATCTGGGGATGGCCCAATCCATG
CACAATGCATCCCTAATCCTGGTGCAGACCCACCAGACCGCCGAGGATCA
AGTGGTGCAGGCTCAGCTGTGCAGTGCCATGGTGGTGCAGCACATCGGCG
ACTATCTGCGCGAGGAGCAGGATCAGTGCCGGCAATCATAGTGGACCGAC
CCTTCCCGTAAGCAATAGTCCTAAGAGAGAACCCAGGCAAAAACAGCCAA
TGGCAAATTTATGCACCCGCAAGATGACAGGGGCCGAGGACTCGCCACAT
CCTGTTCACTTATTGCTTATGCATGACATTTATTTGACAAGTTTTTGATT
GATTTTACAGCTGCTGCAGTCGATCTGGTACAGCTATCAGCATATTTGCA
GGCACAGTGAAGCCTTTTTTAAAGTCTGGCTTGGAATTGAAATAAAATCA
ATTTCAAATCACTATGTTCTTATAAAACGCTAAGAGGCGTGTGTTAAACC
AAGGAATTTACACATTTTAAAATGATCAATAAATAGTGAAGTAAATTACC
AAAAAAAAAAAAAAAA

RE26525.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-RA 1120 CG11672-RA 12..1108 2..1099 5450 99.9 Plus
CG11672.a 964 CG11672.a 9..764 2..757 3780 100 Plus
CG11672.a 964 CG11672.a 765..952 911..1099 905 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4115427..4116455 1099..70 5100 99.9 Minus
chr3R 27901430 chr3R 4116517..4116585 70..2 345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8289407..8290435 1099..70 5100 99.9 Minus
3R 32079331 3R 8290497..8290565 70..2 345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8030238..8031266 1099..70 5110 99.9 Minus
3R 31820162 3R 8031328..8031396 70..2 345 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:18:48 has no hits.

RE26525.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:19:47 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4115426..4116455 70..1100 99 <- Minus
chr3R 4116518..4116585 1..69 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:34 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..723 19..741 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:25 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..723 19..741 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:44:07 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..723 19..741 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:08 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..723 19..741 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:07 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..723 19..741 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:17 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..1097 2..1100 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:25 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..1097 2..1100 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:44:07 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 13..1110 1..1100 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:08 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 1..1097 2..1100 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:07 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
CG11672-RA 13..1110 1..1100 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:47 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8289406..8290435 70..1100 99 <- Minus
3R 8290498..8290565 1..69 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:47 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8289406..8290435 70..1100 99 <- Minus
3R 8290498..8290565 1..69 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:47 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8289406..8290435 70..1100 99 <- Minus
3R 8290498..8290565 1..69 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:44:07 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4115128..4116157 70..1100 99 <- Minus
arm_3R 4116220..4116287 1..69 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:42 Download gff for RE26525.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8030237..8031266 70..1100 99 <- Minus
3R 8031329..8031396 1..69 98   Minus

RE26525.hyp Sequence

Translation from 3 to 740

> RE26525.hyp
KYNRKMMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNL
AEIAVSVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQ
LVVSNPDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARV
QEFVQQIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMH
NASLILVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQS*

RE26525.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PB 240 CG11672-PB 1..240 6..245 1210 100 Plus
CG11672-PA 240 CG11672-PA 1..240 6..245 1210 100 Plus

RE26525.pep Sequence

Translation from 18 to 740

> RE26525.pep
MMSQTLGVLALLLLTLADCQEVGYETKMETETTNYGPVTMVVDNLAEIAV
SVSDDTSIQLEEKINRTRQNIAGNIEVLTANAMAELSDVIYETNQLVVSN
PDCNPAWSLDELNENVTHQLGGCTEDLGSLLEDFRLESQLALARVQEFVQ
QIAHLPAKCQLLGASPLNPLASAGGSVCFINAMAEINLGMAQSMHNASLI
LVQTHQTAEDQVVQAQLCSAMVVQHIGDYLREEQDQCRQS*

RE26525.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16677-PA 242 GF16677-PA 1..242 2..239 795 66.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17464-PA 240 GG17464-PA 1..240 1..240 1083 91.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23393-PA 245 GH23393-PA 1..244 2..237 464 44.1 Plus
Dgri\GH18915-PA 245 GH18915-PA 1..244 2..237 464 44.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11672-PB 240 CG11672-PB 1..240 1..240 1210 100 Plus
CG11672-PA 240 CG11672-PA 1..240 1..240 1210 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23415-PA 253 GI23415-PA 1..252 2..237 468 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24128-PA 162 GL24128-PA 1..159 83..237 506 62.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11135-PA 244 GA11135-PA 34..241 34..237 688 63.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26358-PA 238 GM26358-PA 1..238 1..240 1138 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20880-PA 238 GD20880-PA 1..238 1..240 1186 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10621-PA 243 GJ10621-PA 37..242 35..237 464 45.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11709-PA 241 GK11709-PA 1..240 2..240 660 53.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24863-PA 240 GE24863-PA 1..240 1..240 1000 88.8 Plus