Clone RE26528 Report

Search the DGRC for RE26528

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:265
Well:28
Vector:pFlc-1
Associated Gene/TranscriptCG13049-RA
Protein status:RE26528.pep: gold
Preliminary Size:672
Sequenced Size:749

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13049 2002-01-01 Sim4 clustering to Release 2
CG13049 2002-04-09 Blastp of sequenced clone
CG13049 2003-01-01 Sim4 clustering to Release 3
CG13049 2008-04-29 Release 5.5 accounting
CG13049 2008-08-15 Release 5.9 accounting
CG13049 2008-12-18 5.12 accounting

Clone Sequence Records

RE26528.complete Sequence

749 bp (749 high quality bases) assembled on 2002-04-09

GenBank Submission: AY095198

> RE26528.complete
ATCACAGTTCAGTCTGCCTTCAAGCTAATCACACCTAGCAAATCATACCC
AATCCCCAAAATGTTCGCCAAGATTGTGCTCGTTGCCCTCTGCGTGGCCT
CTGCTCAGGCTGGTCTCCTTCCTTTCCATGCTCCGGCTCCACTGGCTGCT
CCACTTGCTCCTGCCTTCGCAGCTCCCCTGGCTGCTCCTGTGGCTACCGC
CGGAGTGGTGGCTCCATATGCCTCCAGCTTCAATGCCCACCGCATCAACC
ACGCCGTGGCATACCCAGTGGCTCCTGCTCCAGCTCCAGTGGCCTTCGCT
GCTCCCCTTCCCGCTCCCCTGCCCGTTCCAGTTGCTGCTCCCGCTCCAGT
GGCCTTTGCCGCTCCTGCTCCTCTGCCAGTGGCTGCTGCTCCTGCTCCGG
TGGCCTTTGCTGCTCCCGCCAAGGTTGCCTTCGCCGCTCCCGCTCCGGTG
GCTGCTCCTCTGGGCTTCGCCCCTGCTCCGGCGCCTGTTGCCTTCGCCGC
ACCAGCCAAGTTCGGATTCGGACCCTTCGCCGCTCCCCTGGCTGCTCCAG
TCCCAGCGCCTCTGGCTGTGGCCCCCAAGTTCGCTCCCGCCCCATACTTC
TTCTAAGGACTTAGCTGTAGGATCACCCAGCTCATACACTCCCATCCGTC
CTATTAGATTGTAGAAACTAGCCCAAATCTTCATCTCCTAGAGAGCAGCA
ATGCTTGGCGAATAAACAATTATCCATTAATCTAAAAAAAAAAAAAAAA

RE26528.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-RA 1145 CG13049-RA 274..1005 1..732 3660 100 Plus
CG13049-RB 1145 CG13049-RB 274..1005 1..732 3660 100 Plus
CG13049.a 732 CG13049.a 1..729 1..732 3590 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16270848..16271502 732..78 3215 99.4 Minus
chr3L 24539361 chr3L 16271565..16271642 78..1 390 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16281132..16281786 732..78 3275 100 Minus
3L 28110227 3L 16281849..16281926 78..1 390 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16274232..16274886 732..78 3275 100 Minus
3L 28103327 3L 16274949..16275026 78..1 390 100 Minus
Blast to na_te.dros performed 2019-03-16 12:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2872 369..252 115 56.8 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 965..1037 268..342 109 62.7 Plus

RE26528.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:10:05 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16270847..16271120 460..733 99 == Minus
chr3L 16271250..16271501 79..330 98 <- Minus
chr3L 16271565..16271642 1..78 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:35 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RB 67..672 1..606 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:09:23 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RB 67..672 1..606 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:55:42 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 1..546 61..606 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:01 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RB 67..672 1..606 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:43 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 1..546 61..606 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:40 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 1..732 1..733 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:09:23 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 1..732 1..733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:55:42 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 5..736 1..733 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:01 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 1..732 1..733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:43 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
CG13049-RA 5..736 1..732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:05 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16281131..16281785 79..733 99 <- Minus
3L 16281849..16281926 1..78 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:05 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16281131..16281785 79..733 99 <- Minus
3L 16281849..16281926 1..78 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:05 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16281131..16281785 79..733 99 <- Minus
3L 16281849..16281926 1..78 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:55:42 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16274231..16274885 79..733 99 <- Minus
arm_3L 16274949..16275026 1..78 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:23 Download gff for RE26528.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16274231..16274885 79..733 99 <- Minus
3L 16274949..16275026 1..78 100   Minus

RE26528.hyp Sequence

Translation from 0 to 605

> RE26528.hyp
ITVQSAFKLITPSKSYPIPKMFAKIVLVALCVASAQAGLLPFHAPAPLAA
PLAPAFAAPLAAPVATAGVVAPYASSFNAHRINHAVAYPVAPAPAPVAFA
APLPAPLPVPVAAPAPVAFAAPAPLPVAAAPAPVAFAAPAKVAFAAPAPV
AAPLGFAPAPAPVAFAAPAKFGFGPFAAPLAAPVPAPLAVAPKFAPAPYF
F*

RE26528.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PA 181 CG13049-PA 1..181 21..201 924 100 Plus
CG31626-PB 285 CG31626-PB 21..246 1..200 245 38.2 Plus
CG31626-PA 285 CG31626-PA 21..246 1..200 245 38.2 Plus
CG10953-PB 278 CG10953-PB 62..241 41..198 241 40.9 Plus
CG10953-PA 278 CG10953-PA 62..241 41..198 241 40.9 Plus
CG10953-PB 278 CG10953-PB 29..156 44..198 228 36.8 Plus
CG10953-PB 278 CG10953-PB 53..227 44..198 228 40.7 Plus
CG10953-PB 278 CG10953-PB 103..244 41..188 223 41.8 Plus
CG10953-PB 278 CG10953-PB 28..137 92..198 216 48.3 Plus
CG31626-PB 285 CG31626-PB 114..267 32..192 211 41.6 Plus
CG31626-PA 285 CG31626-PA 114..267 32..192 211 41.6 Plus
CG31626-PB 285 CG31626-PB 140..268 40..169 199 47.5 Plus
CG31626-PA 285 CG31626-PA 140..268 40..169 199 47.5 Plus
CG31626-PB 285 CG31626-PB 160..281 33..141 168 44.4 Plus
CG31626-PA 285 CG31626-PA 160..281 33..141 168 44.4 Plus
CG10953-PB 278 CG10953-PB 25..105 119..198 153 49.4 Plus

RE26528.pep Sequence

Translation from 60 to 605

> RE26528.pep
MFAKIVLVALCVASAQAGLLPFHAPAPLAAPLAPAFAAPLAAPVATAGVV
APYASSFNAHRINHAVAYPVAPAPAPVAFAAPLPAPLPVPVAAPAPVAFA
APAPLPVAAAPAPVAFAAPAKVAFAAPAPVAAPLGFAPAPAPVAFAAPAK
FGFGPFAAPLAAPVPAPLAVAPKFAPAPYFF*

RE26528.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10304-PA 208 GF10304-PA 1..87 1..74 171 70.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13477-PA 183 GG13477-PA 1..183 1..181 699 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15616-PA 192 GH15616-PA 1..49 1..64 182 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13049-PA 181 CG13049-PA 1..181 1..181 924 100 Plus
CG10953-PB 278 CG10953-PB 62..241 21..178 241 40.9 Plus
CG10953-PA 278 CG10953-PA 62..241 21..178 241 40.9 Plus
CG31626-PB 285 CG31626-PB 53..246 12..180 239 41.3 Plus
CG31626-PA 285 CG31626-PA 53..246 12..180 239 41.3 Plus
CG14095-PA 162 CG14095-PA 4..160 2..149 235 44.2 Plus
CG2962-PA 376 CG2962-PA 226..356 33..176 229 50.3 Plus
CG10953-PB 278 CG10953-PB 29..156 24..178 228 36.8 Plus
CG10953-PB 278 CG10953-PB 53..227 24..178 228 40.7 Plus
CG10953-PA 278 CG10953-PA 29..156 24..178 228 36.8 Plus
CG10953-PA 278 CG10953-PA 53..227 24..178 228 40.7 Plus
CG30457-PA 189 CG30457-PA 3..157 2..178 226 37.4 Plus
CG10953-PB 278 CG10953-PB 103..244 21..168 223 41.8 Plus
CG10953-PA 278 CG10953-PA 103..244 21..168 223 41.8 Plus
CG2962-PA 376 CG2962-PA 219..354 61..180 222 47.5 Plus
CG31626-PB 285 CG31626-PB 74..255 13..180 221 40.4 Plus
CG31626-PA 285 CG31626-PA 74..255 13..180 221 40.4 Plus
CG32564-PA 409 CG32564-PA 165..317 14..155 221 40.6 Plus
CG10953-PB 278 CG10953-PB 28..137 72..178 216 48.3 Plus
CG10953-PA 278 CG10953-PA 28..137 72..178 216 48.3 Plus
CG30457-PA 189 CG30457-PA 31..161 20..148 213 45.6 Plus
CG31626-PB 285 CG31626-PB 114..267 12..172 211 41.6 Plus
CG31626-PA 285 CG31626-PA 114..267 12..172 211 41.6 Plus
CG31626-PB 285 CG31626-PB 41..201 24..180 209 41 Plus
CG31626-PA 285 CG31626-PA 41..201 24..180 209 41 Plus
CG31626-PB 285 CG31626-PB 140..268 20..149 199 47.5 Plus
CG31626-PA 285 CG31626-PA 140..268 20..149 199 47.5 Plus
CG15740-PB 975 CG15740-PB 586..704 71..178 199 43.9 Plus
Cpr64Ad-PB 247 CG1259-PB 3..134 43..176 197 46.5 Plus
Cpn-PA 842 CG4795-PA 54..216 12..178 196 36.5 Plus
Cpn-PB 864 CG4795-PB 54..216 12..178 196 36.5 Plus
Cpn-PA 842 CG4795-PA 2..185 16..176 195 35.3 Plus
Cpn-PB 864 CG4795-PB 2..185 16..176 195 35.3 Plus
CG15740-PB 975 CG15740-PB 591..716 21..142 192 46.6 Plus
CG15740-PB 975 CG15740-PB 576..716 33..165 189 41.1 Plus
CG31626-PB 285 CG31626-PB 39..158 69..180 183 47.5 Plus
CG31626-PA 285 CG31626-PA 39..158 69..180 183 47.5 Plus
CG13678-PA 128 CG13678-PA 4..124 2..134 182 41 Plus
CG2962-PA 376 CG2962-PA 256..368 14..139 180 45.5 Plus
CG13047-PB 170 CG13047-PB 1..170 1..170 180 37 Plus
CG11584-PB 662 CG11584-PB 82..187 68..171 180 46.8 Plus
CG13674-PB 137 CG13674-PB 15..133 30..134 178 40.3 Plus
CG13674-PA 137 CG13674-PA 15..133 30..134 178 40.3 Plus
CG8543-PA 219 CG8543-PA 1..202 1..177 175 37.6 Plus
Nup58-PA 546 CG7360-PA 56..215 29..169 174 42.6 Plus
CG32564-PA 409 CG32564-PA 154..274 54..178 171 43.5 Plus
CG13679-PB 119 CG13679-PB 12..114 10..127 169 40.7 Plus
CG31626-PB 285 CG31626-PB 160..281 13..121 168 44.4 Plus
CG31626-PA 285 CG31626-PA 160..281 13..121 168 44.4 Plus
CG45069-PB 129 CG45069-PB 4..123 5..144 167 38.6 Plus
CG45069-PA 129 CG45069-PA 4..123 5..144 167 38.6 Plus
Vml-PB 578 CG34333-PB 74..220 22..172 165 34.6 Plus
Vml-PA 578 CG34333-PA 74..220 22..172 165 34.6 Plus
CG32564-PA 409 CG32564-PA 148..318 13..173 164 35.8 Plus
CG32564-PA 409 CG32564-PA 159..319 33..178 163 38.6 Plus
CG11584-PB 662 CG11584-PB 254..444 20..178 162 34.4 Plus
825-Oak-PB 129 CG32208-PB 4..126 2..142 162 39.7 Plus
Ccp84Ag-PA 191 CG2342-PA 3..176 2..166 162 37 Plus
Vml-PB 578 CG34333-PB 80..229 21..173 162 35.2 Plus
Vml-PB 578 CG34333-PB 288..434 29..172 162 34.4 Plus
Vml-PA 578 CG34333-PA 80..229 21..173 162 35.2 Plus
Vml-PA 578 CG34333-PA 288..434 29..172 162 34.4 Plus
Cpr64Ad-PB 247 CG1259-PB 7..135 5..134 161 41.4 Plus
CG12519-PB 131 CG12519-PB 10..128 75..176 160 44.5 Plus
CG12519-PA 131 CG12519-PA 10..128 75..176 160 44.5 Plus
CG18294-PA 141 CG18294-PA 10..116 75..172 160 46.8 Plus
Vml-PB 578 CG34333-PB 287..450 22..172 160 33.9 Plus
Vml-PA 578 CG34333-PA 287..450 22..172 160 33.9 Plus
CG32213-PB 129 CG32213-PB 4..126 2..142 159 39 Plus
CG31626-PB 285 CG31626-PB 32..133 72..180 154 43.2 Plus
CG31626-PA 285 CG31626-PA 32..133 72..180 154 43.2 Plus
CG32564-PA 409 CG32564-PA 193..354 13..177 154 36.7 Plus
CG15740-PB 975 CG15740-PB 574..691 99..178 154 44.1 Plus
Cpn-PA 842 CG4795-PA 127..291 24..171 154 36.9 Plus
Cpn-PB 864 CG4795-PB 127..291 24..171 154 36.9 Plus
Vml-PB 578 CG34333-PB 89..255 22..177 154 35.3 Plus
Vml-PB 578 CG34333-PB 241..410 22..172 154 33.1 Plus
Vml-PA 578 CG34333-PA 89..255 22..177 154 35.3 Plus
Vml-PA 578 CG34333-PA 241..410 22..172 154 33.1 Plus
CG10953-PB 278 CG10953-PB 25..105 99..178 153 49.4 Plus
CG10953-PA 278 CG10953-PA 25..105 99..178 153 49.4 Plus
CG11584-PB 662 CG11584-PB 105..299 24..178 153 34.8 Plus
CG11584-PB 662 CG11584-PB 83..323 16..178 152 30.9 Plus
Vml-PB 578 CG34333-PB 97..275 22..172 152 33.5 Plus
Vml-PB 578 CG34333-PB 336..485 29..177 152 34.6 Plus
Vml-PA 578 CG34333-PA 97..275 22..172 152 33.5 Plus
Vml-PA 578 CG34333-PA 336..485 29..177 152 34.6 Plus
CG8541-PA 275 CG8541-PA 104..222 23..161 151 44.3 Plus
CG34205-PA 217 CG34205-PA 27..208 5..177 150 34 Plus
CG2962-PA 376 CG2962-PA 264..368 13..112 149 46.2 Plus
Muc91C-PB 949 CG7709-PB 259..437 22..178 149 34.4 Plus
Muc91C-PA 950 CG7709-PA 260..438 22..178 149 34.4 Plus
CG32214-PC 116 CG32214-PC 10..113 75..176 148 42.5 Plus
CG32214-PB 116 CG32214-PB 10..113 75..176 148 42.5 Plus
CG32248-PB 182 CG32248-PB 4..152 2..162 148 40 Plus
CG18130-PA 706 CG18130-PA 582..705 9..144 148 42 Plus
CG11584-PB 662 CG11584-PB 533..651 38..152 147 34.4 Plus
CG32249-PB 242 CG32249-PB 56..204 25..178 147 33.8 Plus
CG11122-PA 3539 CG11122-PA 1234..1407 21..173 147 34.1 Plus
Cpn-PA 842 CG4795-PA 257..438 12..178 146 33.2 Plus
Cpn-PB 864 CG4795-PB 257..438 12..178 146 33.2 Plus
825-Oak-PB 129 CG32208-PB 10..108 75..179 146 42.9 Plus
CG32248-PB 182 CG32248-PB 67..168 24..136 145 41 Plus
RpL22-PA 299 CG7434-PA 66..169 33..149 144 45.8 Plus
CG32213-PB 129 CG32213-PB 10..108 75..179 143 41.9 Plus
CG32248-PB 182 CG32248-PB 24..123 85..178 143 46.1 Plus
CG31496-PA 269 CG31496-PA 133..213 69..149 143 52.9 Plus
CG12519-PB 131 CG12519-PB 5..129 3..143 142 34 Plus
CG12519-PA 131 CG12519-PA 5..129 3..143 142 34 Plus
CG32248-PB 182 CG32248-PB 8..145 44..177 141 40.4 Plus
CG18294-PA 141 CG18294-PA 5..139 3..130 139 37.5 Plus
CG13066-PB 93 CG13066-PB 5..88 2..78 139 41.2 Plus
CG32214-PC 116 CG32214-PC 4..113 2..111 137 38.8 Plus
CG32214-PB 116 CG32214-PB 4..113 2..111 137 38.8 Plus
CG14096-PA 122 CG14096-PA 10..119 75..176 137 40 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18017-PA 204 GL18017-PA 1..53 1..64 213 76.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28366-PA 206 GA28366-PA 1..53 1..64 214 76.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24426-PA 181 GM24426-PA 1..181 1..181 725 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12496-PA 181 GD12496-PA 1..181 1..181 720 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12641-PA 164 GJ12641-PA 1..50 1..64 148 65.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22571-PA 181 GE22571-PA 1..181 1..181 284 95.6 Plus