Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE26627.complete Sequence
2027 bp (2027 high quality bases) assembled on 2004-12-16
GenBank Submission: BT021294
> RE26627.complete
AGTGGCGTCGCCGAGCCCGAAGAGAAAACACCTTACCACATCCGAGAGTC
CCAGTAGCTGCCGCCCAAGCCGTGAAAGTGGTGGCCAATCAGTCAGTCAG
TCGCCTTCGAGTATCGAAAAGGAAACTGCAATTTATTGCGAAATTATATG
CACTTTTACTTGCCGCTGTCGTCAGTCGCTGGACCATTGCTTTACATAAT
TCCGCAATGTACAAGCACACGGTCAAGTCCAAGTTGAGCCAGGTGCGCAG
TAACCCGCCACCCCCTGCCGCTGCCTCGCCAACAACACACAAACATGGAT
TGGGGGCAGGCAAGAAGTTCTTCTCCAATATACGCCACAAAATCGAGGAT
AATTTGACGCCCAAGTTGAGTGGAAAACTATATTACAAAGGCAGCAAGCA
CACCAGATCCATGAGTGCACTCTGCACGGTGGATGGCGGATGTGTGGGTG
GGAAGTATACGCCGAAGGTTGTGCCCACAAGTCCCGTACCACTTCAAATG
CCCAGCCAGATGAGCAGCAGTGTGTGCAGCTATGTGGACAGCGATGAGGA
AAGTCACCTGAGCCTGAGTCTCAATTTGGCGCAGCAGTCGCTCGAGGATG
AGATCTTCGCAGAGCTAGAGAAGGTGGCACACGATGAGAGCAAACTGAAC
GAGGTGCTTCAAAGCTTTGACCAGATACTAAACGAGTATCCACCTTTGGA
GGGAATTATATTAGCTCCTCAAGAGGAGCTGCCCGCTCCACCGGCGGAGT
TCAGCGATCGCCAGCCAATGTTGTCAAAGTCACACAGTACTCTAAGCATG
GGCAGGACTAGGATGCAGGTGTACCAGTCCCCGGAATTGGCGGGATCTGT
GTTGCTACTACGCGGAGCCGGAGGCGATTCCAGATACAACTCCCTGAGTG
ATCTTAGCGGCAGCAGGATACCGGTACGCAAACAATCGAGTCTGCGCAAG
CGCAGCGAAAGTTTTTGCCTCGAGCAACCGGTTTGCTCCAGGACATCCAG
TAAGCAGCGCACTCGGTCCATGCTGACCCTTAATACAGCTGCACCTGTAG
GATCAACCATTCCGAATGCTGTAGCCATGCCGAAGCGAGCAAACTCCAGC
CTCGAAAAGAGACACATAACTGCCAGACCAGCGGCCAGGAGAGCAAACTC
CACCCTGAAACCGGGTGGGATAAAGCCAAAATCGCCCAATGCAAACAGCG
ATGAACTGCTCGTGAAGTGTTTGGCCAAAGGACAGGAGATCCTGCGTCAG
GTGGAGAGCATGAGTGCCAAGCCCAAGAGGAGCACCAGTCGGGGAGTAAC
CAAGGAGCACTCGCAGTTGGTGAAGAACAAGAAGAAGCTACAGAAGCTGC
ATTACGCCAACGAGGAGAAGATGGGCAGACCCAAACTTGAGTCCTGCAAG
ATTATACCGCCGAAACTAGGGGAAACATCCGACAAAAATCAGGAACTACT
CGTAAAAGTTGTCCAGGATATAAAGATCACACCACAACAGAATCTAAAGA
AACCCACAAAGGAAATCCGCGCAGAGCAAGAAGAGGATTCTGATGATTCG
GGACACATAAGCAACACACAGCTCTCCACATCCACGAGCAACTCCACCGG
TAGCCTTTGTGAATCTGAAGGCGATGAAGCGGAGGATCAACCGCCGGATG
CAAAAAGCTGTACCAAATCCAACAAGATCGCGGAGCTTTTACAGAAATTC
GAAGCAGCTGCGGCGGCTGGGAAAAAAAGTGCCACCGCCACGATGCACTG
CCCCACTGTGGTGGCCAGCAAGGTGGTGGCCCAGGTGCAAGCTGTGAGCT
GCATTCAGACACAGGTGGAGATCTATCCCACCTACACGAAAGAGGTAACT
ATGCGGCTGCACTGACTTGGCAGCGGCAGCGCCGATCCCGCTTCCGATCC
TCCCCAGCCACTCCAATTTATGCTCTCAGCTGCATCTACTGCACTGCACC
TGTCTATATCTAACTCTATCCAACTTATGCTGTATATGGAATAAATATTT
ATTGTACAAATCAAAAAAAAAAAAAAA
RE26627.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32855-RA | 2019 | CG32855-RA | 8..2019 | 1..2012 | 10045 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 11903581..11905592 | 2012..1 | 9955 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16078979..16080991 | 2013..1 | 10050 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 15819810..15821822 | 2013..1 | 10050 | 99.9 | Minus |
Blast to na_te.dros performed on 2019-03-16 04:54:24 has no hits.
RE26627.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:55:38 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 11903581..11905592 | 1..2012 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:41 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 1..1659 | 207..1865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:25 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 1..1659 | 207..1865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:13 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 1..1659 | 207..1865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:19 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 1..1659 | 207..1865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:52:58 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 1..1659 | 207..1865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:46 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 8..1872 | 1..1865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:25 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 8..2019 | 1..2012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:13 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 8..2019 | 1..2012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:19 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 8..1872 | 1..1865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:52:58 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32855-RA | 2..2013 | 1..2012 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:38 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16078980..16080991 | 1..2012 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:38 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16078980..16080991 | 1..2012 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:38 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16078980..16080991 | 1..2012 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:13 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11904702..11906713 | 1..2012 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:46 Download gff for
RE26627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15819811..15821822 | 1..2012 | 99 | | Minus |
RE26627.pep Sequence
Translation from 2 to 1864
> RE26627.pep
WRRRARRENTLPHPRVPVAAAQAVKVVANQSVSRLRVSKRKLQFIAKLYA
LLLAAVVSRWTIALHNSAMYKHTVKSKLSQVRSNPPPPAAASPTTHKHGL
GAGKKFFSNIRHKIEDNLTPKLSGKLYYKGSKHTRSMSALCTVDGGCVGG
KYTPKVVPTSPVPLQMPSQMSSSVCSYVDSDEESHLSLSLNLAQQSLEDE
IFAELEKVAHDESKLNEVLQSFDQILNEYPPLEGIILAPQEELPAPPAEF
SDRQPMLSKSHSTLSMGRTRMQVYQSPELAGSVLLLRGAGGDSRYNSLSD
LSGSRIPVRKQSSLRKRSESFCLEQPVCSRTSSKQRTRSMLTLNTAAPVG
STIPNAVAMPKRANSSLEKRHITARPAARRANSTLKPGGIKPKSPNANSD
ELLVKCLAKGQEILRQVESMSAKPKRSTSRGVTKEHSQLVKNKKKLQKLH
YANEEKMGRPKLESCKIIPPKLGETSDKNQELLVKVVQDIKITPQQNLKK
PTKEIRAEQEEDSDDSGHISNTQLSTSTSNSTGSLCESEGDEAEDQPPDA
KSCTKSNKIAELLQKFEAAAAAGKKSATATMHCPTVVASKVVAQVQAVSC
IQTQVEIYPTYTKEVTMRLH*
RE26627.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32855-PA | 552 | CG32855-PA | 1..552 | 69..620 | 2806 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI10099-PA | 571 | GI10099-PA | 1..571 | 69..620 | 1555 | 62 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30222-PD | 1887 | GA30222-PD | 1..596 | 69..618 | 1645 | 66.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ23836-PA | 579 | GJ23836-PA | 1..579 | 69..620 | 1417 | 61.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK14015-PA | 573 | GK14015-PA | 1..572 | 69..619 | 1336 | 57.7 | Plus |
RE26627.hyp Sequence
Translation from 2 to 1864
> RE26627.hyp
LRRRARRENTLPHPRVPVAAAQAVKVVANQSVSRLRVSKRKLQFIAKLYA
LLLAAVVSRWTIALHNSAMYKHTVKSKLSQVRSNPPPPAAASPTTHKHGL
GAGKKFFSNIRHKIEDNLTPKLSGKLYYKGSKHTRSMSALCTVDGGCVGG
KYTPKVVPTSPVPLQMPSQMSSSVCSYVDSDEESHLSLSLNLAQQSLEDE
IFAELEKVAHDESKLNEVLQSFDQILNEYPPLEGIILAPQEELPAPPAEF
SDRQPMLSKSHSTLSMGRTRMQVYQSPELAGSVLLLRGAGGDSRYNSLSD
LSGSRIPVRKQSSLRKRSESFCLEQPVCSRTSSKQRTRSMLTLNTAAPVG
STIPNAVAMPKRANSSLEKRHITARPAARRANSTLKPGGIKPKSPNANSD
ELLVKCLAKGQEILRQVESMSAKPKRSTSRGVTKEHSQLVKNKKKLQKLH
YANEEKMGRPKLESCKIIPPKLGETSDKNQELLVKVVQDIKITPQQNLKK
PTKEIRAEQEEDSDDSGHISNTQLSTSTSNSTGSLCESEGDEAEDQPPDA
KSCTKSNKIAELLQKFEAAAAAGKKSATATMHCPTVVASKVVAQVQAVSC
IQTQVEIYPTYTKEVTMRLH*
RE26627.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32855-PA | 552 | CG32855-PA | 1..552 | 69..620 | 2806 | 100 | Plus |