Clone RE26627 Report

Search the DGRC for RE26627

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:266
Well:27
Vector:pFlc-1
Associated Gene/TranscriptCG32855-RA
Protein status:RE26627.pep: gold
Sequenced Size:2027

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32855 2003-01-01 Sim4 clustering to Release 3
CG32855 2008-04-29 Release 5.5 accounting
CG32855 2008-08-15 Release 5.9 accounting
CG32855 2008-12-18 5.12 accounting

Clone Sequence Records

RE26627.complete Sequence

2027 bp (2027 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021294

> RE26627.complete
AGTGGCGTCGCCGAGCCCGAAGAGAAAACACCTTACCACATCCGAGAGTC
CCAGTAGCTGCCGCCCAAGCCGTGAAAGTGGTGGCCAATCAGTCAGTCAG
TCGCCTTCGAGTATCGAAAAGGAAACTGCAATTTATTGCGAAATTATATG
CACTTTTACTTGCCGCTGTCGTCAGTCGCTGGACCATTGCTTTACATAAT
TCCGCAATGTACAAGCACACGGTCAAGTCCAAGTTGAGCCAGGTGCGCAG
TAACCCGCCACCCCCTGCCGCTGCCTCGCCAACAACACACAAACATGGAT
TGGGGGCAGGCAAGAAGTTCTTCTCCAATATACGCCACAAAATCGAGGAT
AATTTGACGCCCAAGTTGAGTGGAAAACTATATTACAAAGGCAGCAAGCA
CACCAGATCCATGAGTGCACTCTGCACGGTGGATGGCGGATGTGTGGGTG
GGAAGTATACGCCGAAGGTTGTGCCCACAAGTCCCGTACCACTTCAAATG
CCCAGCCAGATGAGCAGCAGTGTGTGCAGCTATGTGGACAGCGATGAGGA
AAGTCACCTGAGCCTGAGTCTCAATTTGGCGCAGCAGTCGCTCGAGGATG
AGATCTTCGCAGAGCTAGAGAAGGTGGCACACGATGAGAGCAAACTGAAC
GAGGTGCTTCAAAGCTTTGACCAGATACTAAACGAGTATCCACCTTTGGA
GGGAATTATATTAGCTCCTCAAGAGGAGCTGCCCGCTCCACCGGCGGAGT
TCAGCGATCGCCAGCCAATGTTGTCAAAGTCACACAGTACTCTAAGCATG
GGCAGGACTAGGATGCAGGTGTACCAGTCCCCGGAATTGGCGGGATCTGT
GTTGCTACTACGCGGAGCCGGAGGCGATTCCAGATACAACTCCCTGAGTG
ATCTTAGCGGCAGCAGGATACCGGTACGCAAACAATCGAGTCTGCGCAAG
CGCAGCGAAAGTTTTTGCCTCGAGCAACCGGTTTGCTCCAGGACATCCAG
TAAGCAGCGCACTCGGTCCATGCTGACCCTTAATACAGCTGCACCTGTAG
GATCAACCATTCCGAATGCTGTAGCCATGCCGAAGCGAGCAAACTCCAGC
CTCGAAAAGAGACACATAACTGCCAGACCAGCGGCCAGGAGAGCAAACTC
CACCCTGAAACCGGGTGGGATAAAGCCAAAATCGCCCAATGCAAACAGCG
ATGAACTGCTCGTGAAGTGTTTGGCCAAAGGACAGGAGATCCTGCGTCAG
GTGGAGAGCATGAGTGCCAAGCCCAAGAGGAGCACCAGTCGGGGAGTAAC
CAAGGAGCACTCGCAGTTGGTGAAGAACAAGAAGAAGCTACAGAAGCTGC
ATTACGCCAACGAGGAGAAGATGGGCAGACCCAAACTTGAGTCCTGCAAG
ATTATACCGCCGAAACTAGGGGAAACATCCGACAAAAATCAGGAACTACT
CGTAAAAGTTGTCCAGGATATAAAGATCACACCACAACAGAATCTAAAGA
AACCCACAAAGGAAATCCGCGCAGAGCAAGAAGAGGATTCTGATGATTCG
GGACACATAAGCAACACACAGCTCTCCACATCCACGAGCAACTCCACCGG
TAGCCTTTGTGAATCTGAAGGCGATGAAGCGGAGGATCAACCGCCGGATG
CAAAAAGCTGTACCAAATCCAACAAGATCGCGGAGCTTTTACAGAAATTC
GAAGCAGCTGCGGCGGCTGGGAAAAAAAGTGCCACCGCCACGATGCACTG
CCCCACTGTGGTGGCCAGCAAGGTGGTGGCCCAGGTGCAAGCTGTGAGCT
GCATTCAGACACAGGTGGAGATCTATCCCACCTACACGAAAGAGGTAACT
ATGCGGCTGCACTGACTTGGCAGCGGCAGCGCCGATCCCGCTTCCGATCC
TCCCCAGCCACTCCAATTTATGCTCTCAGCTGCATCTACTGCACTGCACC
TGTCTATATCTAACTCTATCCAACTTATGCTGTATATGGAATAAATATTT
ATTGTACAAATCAAAAAAAAAAAAAAA

RE26627.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32855-RA 2019 CG32855-RA 8..2019 1..2012 10045 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11903581..11905592 2012..1 9955 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16078979..16080991 2013..1 10050 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15819810..15821822 2013..1 10050 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 04:54:24 has no hits.

RE26627.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:55:38 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11903581..11905592 1..2012 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:41 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 1..1659 207..1865 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:25 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 1..1659 207..1865 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:13 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 1..1659 207..1865 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:19 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 1..1659 207..1865 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:52:58 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 1..1659 207..1865 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:46 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 8..1872 1..1865 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:25 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 8..2019 1..2012 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:13 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 8..2019 1..2012 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:19 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 8..1872 1..1865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:52:58 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
CG32855-RA 2..2013 1..2012 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:38 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16078980..16080991 1..2012 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:38 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16078980..16080991 1..2012 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:38 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16078980..16080991 1..2012 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:13 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11904702..11906713 1..2012 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:46 Download gff for RE26627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15819811..15821822 1..2012 99   Minus

RE26627.pep Sequence

Translation from 2 to 1864

> RE26627.pep
WRRRARRENTLPHPRVPVAAAQAVKVVANQSVSRLRVSKRKLQFIAKLYA
LLLAAVVSRWTIALHNSAMYKHTVKSKLSQVRSNPPPPAAASPTTHKHGL
GAGKKFFSNIRHKIEDNLTPKLSGKLYYKGSKHTRSMSALCTVDGGCVGG
KYTPKVVPTSPVPLQMPSQMSSSVCSYVDSDEESHLSLSLNLAQQSLEDE
IFAELEKVAHDESKLNEVLQSFDQILNEYPPLEGIILAPQEELPAPPAEF
SDRQPMLSKSHSTLSMGRTRMQVYQSPELAGSVLLLRGAGGDSRYNSLSD
LSGSRIPVRKQSSLRKRSESFCLEQPVCSRTSSKQRTRSMLTLNTAAPVG
STIPNAVAMPKRANSSLEKRHITARPAARRANSTLKPGGIKPKSPNANSD
ELLVKCLAKGQEILRQVESMSAKPKRSTSRGVTKEHSQLVKNKKKLQKLH
YANEEKMGRPKLESCKIIPPKLGETSDKNQELLVKVVQDIKITPQQNLKK
PTKEIRAEQEEDSDDSGHISNTQLSTSTSNSTGSLCESEGDEAEDQPPDA
KSCTKSNKIAELLQKFEAAAAAGKKSATATMHCPTVVASKVVAQVQAVSC
IQTQVEIYPTYTKEVTMRLH*

RE26627.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32855-PA 552 CG32855-PA 1..552 69..620 2806 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10099-PA 571 GI10099-PA 1..571 69..620 1555 62 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30222-PD 1887 GA30222-PD 1..596 69..618 1645 66.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23836-PA 579 GJ23836-PA 1..579 69..620 1417 61.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14015-PA 573 GK14015-PA 1..572 69..619 1336 57.7 Plus

RE26627.hyp Sequence

Translation from 2 to 1864

> RE26627.hyp
LRRRARRENTLPHPRVPVAAAQAVKVVANQSVSRLRVSKRKLQFIAKLYA
LLLAAVVSRWTIALHNSAMYKHTVKSKLSQVRSNPPPPAAASPTTHKHGL
GAGKKFFSNIRHKIEDNLTPKLSGKLYYKGSKHTRSMSALCTVDGGCVGG
KYTPKVVPTSPVPLQMPSQMSSSVCSYVDSDEESHLSLSLNLAQQSLEDE
IFAELEKVAHDESKLNEVLQSFDQILNEYPPLEGIILAPQEELPAPPAEF
SDRQPMLSKSHSTLSMGRTRMQVYQSPELAGSVLLLRGAGGDSRYNSLSD
LSGSRIPVRKQSSLRKRSESFCLEQPVCSRTSSKQRTRSMLTLNTAAPVG
STIPNAVAMPKRANSSLEKRHITARPAARRANSTLKPGGIKPKSPNANSD
ELLVKCLAKGQEILRQVESMSAKPKRSTSRGVTKEHSQLVKNKKKLQKLH
YANEEKMGRPKLESCKIIPPKLGETSDKNQELLVKVVQDIKITPQQNLKK
PTKEIRAEQEEDSDDSGHISNTQLSTSTSNSTGSLCESEGDEAEDQPPDA
KSCTKSNKIAELLQKFEAAAAAGKKSATATMHCPTVVASKVVAQVQAVSC
IQTQVEIYPTYTKEVTMRLH*

RE26627.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32855-PA 552 CG32855-PA 1..552 69..620 2806 100 Plus