Clone RE26924 Report

Search the DGRC for RE26924

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:269
Well:24
Vector:pFlc-1
Associated Gene/Transcriptbwa-RA
Protein status:RE26924.pep: gold
Sequenced Size:2318

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13969 2001-12-14 Blastp of sequenced clone
CG13969 2002-01-01 Sim4 clustering to Release 2
CG13969 2003-01-01 Sim4 clustering to Release 3
bwa 2008-04-29 Release 5.5 accounting
bwa 2008-08-15 Release 5.9 accounting
bwa 2008-12-18 5.12 accounting

Clone Sequence Records

RE26924.complete Sequence

2318 bp (2318 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071232

> RE26924.complete
TCATCGCTGTTCCAGAAGCGATGACTCGAGAGCGGATTATTATCGCGTCG
CTCGTTGCGCGCTGGTTTATTTTTTGAAAAGTGCGTTCCTAGCGCGAGTG
GTCAGCGTCCCAAACGTCGTAGATTCCATCGCCTGAGCCATCAAGAACTA
AATATTTCCTTACATAACTGCGGAATACTTCGACTCTGCAGTAAGCCACG
CGACGGAAGGCAATCAACAAAGACACGCAAGTGCTTGCACACTGGGCTAT
TATGCAAATTGCGCCACTGCAGCTGGTCTAAGATTGCAAGGAAGGGCGAC
AGAGCAACACACACACACACAAAGTGCCTGGGCAGAACGAGCGGAACCGC
CTCCCCAATCAGCTGTGATCTCTGCGGTCGGGCCTCCATCGAGTGGGCGG
AGAATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACATCTACGCCATGGC
CTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGACTGGTGCGAAGGCA
ACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAACACGTTTAGCAAC
TTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGCTCTTCAAGGAGTA
CGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGGGTGCTGCTCATCG
TGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTTGAGTCTGATTGGC
CAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCATGGCGGCCTTTTC
GCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTGAAAAACGATCGCA
AAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGCTGCGACGGGCTTG
TCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCATGTTCATGAGTGT
GCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGAGTTAGTGACCAGA
GGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTGGGCTGTTGCGGTG
TTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCTGGTCCTCGATCAA
TTTTCCATACCTGCACGGCTTCTGGCACATATTCATTTTTATAGCCGCCT
ACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGAATCGGAGCTGCCC
CAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACGAGTTCGAGTTCGG
GATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCTCTGCGCAACACCA
TCTAAGGACGATTGCGCCGGAATGGAGAGCTGGCAGAGAAGTGACCAAAG
ACCAAGCGATAATATCGTACATGCTTTAAAACCATACACAATTATTGTAA
AATTGCGGCAACGTAATTGTAGCGCACACTTTTTATATAGTTGAAACAGT
TTATTAGCCATAGATGTATTTATATTAAGCAAACGAATCGGATTCGCGGT
TGTACCCAAAAGAGATAAGTCTGTTAACGCCTTAAGATTCGGTGCACCTG
AACACTTGGGCCTAAAACAATAATAGTAGCGCCCTGCTTAGTCCATAAAT
GAATGGGCGATTGCTCCGTGGAACTATTGTAGAAAGACATATCTAAATGA
TGTTTATTGTTCCGTCTATCCCCTAAAATGAGTTTAATCAAAGTCTTCTA
ACCCGTTCTATGAGTATGAGTTACCATCAGACTGTGATATGTTATGAACT
AATTCATCCCATGACTTCCAGAACAAATGGTTCCTACGCTTTCCCAAAGA
GACAAAAAATCGTATTAGGTTGTCAGTACCTGAATTTGTTAATTGTCTAA
TTTACGCAAACTAACCAACTAACACCTACACTTATTCTGGATTGGAAATC
TACTAGCATGTAGCAGTAACCACAACTAAAACACTAAACAAAGTAGAGAT
CGTTGCTCAAAGTATTATGCAATCCAAATCATTCAACCCGCTACCTTGCT
GATTCCACAGATTCGAAAGATTGGCTCGTCTACTGCAGTCTGTACATGCA
GGACTATGACTATGACTACAAGCACCGAAAGAACTAAGGCAAGAAATCGG
GTGGAGAGCCTTCTCCAAACAGAGACATACACAGCGTGATATAAGTTAGA
GTTGCAGAAGGTGGAACAACTAAATTATTTATTAACTACAAAGCTCGCCT
GCTCATCGCGGAAACCAAATTATGTATAGATGCCATATGGAGCGATAGTT
TAGGAAGTATGTATGATTTACTTAGGCTAAACGAATGTCGACAAATATAC
TGTGTTAGGAATGCAAGCTCTCTTGTTTAATCGCAATAAAGAATAGTATT
CCAAAAAAAAAAAAAAAA

RE26924.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-RA 2343 bwa-RA 65..2329 36..2300 11325 100 Plus
bwa.a 1659 bwa.a 112..1305 36..1229 5970 100 Plus
bwa.b 1569 bwa.b 24..1221 36..1229 5905 99.6 Plus
bwa.a 1659 bwa.a 1303..1645 1958..2300 1715 100 Plus
bwa.b 1569 bwa.b 1219..1561 1958..2300 1715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20070720..20072085 935..2300 6770 99.7 Plus
chr2L 23010047 chr2L 20064751..20065254 36..541 2450 99.4 Plus
chr2L 23010047 chr2L 20067415..20067672 541..798 1290 100 Plus
chr2L 23010047 chr2L 20067744..20067882 798..936 695 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20072352..20073717 935..2300 6830 100 Plus
2L 23513712 2L 20066393..20066898 36..541 2530 100 Plus
2L 23513712 2L 20069047..20069304 541..798 1290 100 Plus
2L 23513712 2L 20069376..20069514 798..936 695 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20072352..20073717 935..2300 6830 100 Plus
2L 23513712 2L 20066393..20066898 36..541 2530 100 Plus
2L 23513712 2L 20069047..20069304 541..798 1290 100 Plus
2L 23513712 2L 20069376..20069514 798..936 695 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:35:26 has no hits.

RE26924.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:36:34 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20064751..20065254 36..541 99 -> Plus
chr2L 20067416..20067672 542..798 100 -> Plus
chr2L 20067745..20067882 799..936 100 -> Plus
chr2L 20070722..20072087 937..2302 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:57 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 1..852 404..1255 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:28 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 1..852 404..1255 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:28 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 1..852 404..1255 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:05 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 1..852 404..1255 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:21 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 1..852 404..1255 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:33:20 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 24..2290 36..2302 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:28 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 24..2290 36..2302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:28 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 3..2269 36..2302 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:05 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 24..2290 36..2302 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:21 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
bwa-RA 3..2269 36..2302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:34 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20066393..20066898 36..541 100 -> Plus
2L 20069048..20069304 542..798 100 -> Plus
2L 20069377..20069514 799..936 100 -> Plus
2L 20072354..20073719 937..2302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:34 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20066393..20066898 36..541 100 -> Plus
2L 20069048..20069304 542..798 100 -> Plus
2L 20069377..20069514 799..936 100 -> Plus
2L 20072354..20073719 937..2302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:34 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20066393..20066898 36..541 100 -> Plus
2L 20069048..20069304 542..798 100 -> Plus
2L 20069377..20069514 799..936 100 -> Plus
2L 20072354..20073719 937..2302 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:28 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20066393..20066898 36..541 100 -> Plus
arm_2L 20069048..20069304 542..798 100 -> Plus
arm_2L 20069377..20069514 799..936 100 -> Plus
arm_2L 20072354..20073719 937..2302 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:15 Download gff for RE26924.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20066393..20066898 36..541 100 -> Plus
2L 20069048..20069304 542..798 100 -> Plus
2L 20069377..20069514 799..936 100 -> Plus
2L 20072354..20073719 937..2302 99   Plus

RE26924.hyp Sequence

Translation from 403 to 1254

> RE26924.hyp
MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF
LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ
LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS
WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF
CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ
RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTI*

RE26924.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-PA 283 CG13969-PA 1..283 1..283 1515 100 Plus
bwa-PB 300 CG13969-PB 1..275 1..275 1476 100 Plus

RE26924.pep Sequence

Translation from 403 to 1254

> RE26924.pep
MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF
LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ
LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS
WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF
CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ
RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTI*

RE26924.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14446-PA 284 GF14446-PA 1..284 1..283 1455 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21218-PA 283 GG21218-PA 1..283 1..283 1475 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13657-PA 278 GH13657-PA 1..278 4..283 1309 88.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
bwa-PA 283 CG13969-PA 1..283 1..283 1515 100 Plus
bwa-PB 300 CG13969-PB 1..275 1..275 1476 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17409-PA 278 GI17409-PA 1..278 4..283 1322 88.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26347-PA 164 GL26347-PA 19..164 11..156 741 96.6 Plus
Dper\GL26348-PA 128 GL26348-PA 3..100 179..276 516 96.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12666-PA 291 GA12666-PA 19..291 11..283 1386 95.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17388-PA 283 GM17388-PA 1..283 1..283 1484 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24242-PA 178 GD24242-PA 1..178 1..178 916 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18341-PA 278 GJ18341-PA 1..278 4..283 1309 88.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18730-PA 290 GK18730-PA 16..290 9..283 1379 94.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13293-PA 283 GE13293-PA 1..283 1..283 1484 99.6 Plus