BDGP Sequence Production Resources |
Search the DGRC for RE26924
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 269 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | bwa-RA |
Protein status: | RE26924.pep: gold |
Sequenced Size: | 2318 |
Gene | Date | Evidence |
---|---|---|
CG13969 | 2001-12-14 | Blastp of sequenced clone |
CG13969 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13969 | 2003-01-01 | Sim4 clustering to Release 3 |
bwa | 2008-04-29 | Release 5.5 accounting |
bwa | 2008-08-15 | Release 5.9 accounting |
bwa | 2008-12-18 | 5.12 accounting |
2318 bp (2318 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071232
> RE26924.complete TCATCGCTGTTCCAGAAGCGATGACTCGAGAGCGGATTATTATCGCGTCG CTCGTTGCGCGCTGGTTTATTTTTTGAAAAGTGCGTTCCTAGCGCGAGTG GTCAGCGTCCCAAACGTCGTAGATTCCATCGCCTGAGCCATCAAGAACTA AATATTTCCTTACATAACTGCGGAATACTTCGACTCTGCAGTAAGCCACG CGACGGAAGGCAATCAACAAAGACACGCAAGTGCTTGCACACTGGGCTAT TATGCAAATTGCGCCACTGCAGCTGGTCTAAGATTGCAAGGAAGGGCGAC AGAGCAACACACACACACACAAAGTGCCTGGGCAGAACGAGCGGAACCGC CTCCCCAATCAGCTGTGATCTCTGCGGTCGGGCCTCCATCGAGTGGGCGG AGAATGGGCGGGATGGGGGGCGGCGGGCTGCTGGACATCTACGCCATGGC CTGGGAGCACCTAAGACCCGGAAGCTCGCCCGTCGACTGGTGCGAAGGCA ACTACTTGATTTCGTCCAACATCGCCGAGTTCGTGAACACGTTTAGCAAC TTCCTGTTCATCCTACTGCCGCCCGTCCTTATAATGCTCTTCAAGGAGTA CGGACGCTTTGTGACGCCCGGAATCCACGTCATCTGGGTGCTGCTCATCG TGGTTGGCCTGAGTTCGATGTACTTCCATGCCACTTTGAGTCTGATTGGC CAGCTGCTGGACGAACTGGCCATACTCTGGGTCTTCATGGCGGCCTTTTC GCTCTTCTATCCGAAGCGATACTATCCCAAGTTCGTGAAAAACGATCGCA AAACCTTCAGTTGGCTCATGCTCTTGTCGGCGATTGCTGCGACGGGCTTG TCGTGGTGGAAGCCCATTGTTAACGCCTTTGTTCTCATGTTCATGAGTGT GCCGACCATGGTAATGCTCTACACAGAGCTGCAGAGAGTTAGTGACCAGA GGGTCTACCGCCTGGGCATCCGATCGACGACCGTCTGGGCTGTTGCGGTG TTCTGCTGGATCAATGACCGGATCTTCTGCGAGGCCTGGTCCTCGATCAA TTTTCCATACCTGCACGGCTTCTGGCACATATTCATTTTTATAGCCGCCT ACACGGTGCTGGTGCTTTTCGCCTACTTCTACGTGGAATCGGAGCTGCCC CAGCGACAGCCGCTGCTGAAGTACTGGCCAAAGAACGAGTTCGAGTTCGG GATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCTCTGCGCAACACCA TCTAAGGACGATTGCGCCGGAATGGAGAGCTGGCAGAGAAGTGACCAAAG ACCAAGCGATAATATCGTACATGCTTTAAAACCATACACAATTATTGTAA AATTGCGGCAACGTAATTGTAGCGCACACTTTTTATATAGTTGAAACAGT TTATTAGCCATAGATGTATTTATATTAAGCAAACGAATCGGATTCGCGGT TGTACCCAAAAGAGATAAGTCTGTTAACGCCTTAAGATTCGGTGCACCTG AACACTTGGGCCTAAAACAATAATAGTAGCGCCCTGCTTAGTCCATAAAT GAATGGGCGATTGCTCCGTGGAACTATTGTAGAAAGACATATCTAAATGA TGTTTATTGTTCCGTCTATCCCCTAAAATGAGTTTAATCAAAGTCTTCTA ACCCGTTCTATGAGTATGAGTTACCATCAGACTGTGATATGTTATGAACT AATTCATCCCATGACTTCCAGAACAAATGGTTCCTACGCTTTCCCAAAGA GACAAAAAATCGTATTAGGTTGTCAGTACCTGAATTTGTTAATTGTCTAA TTTACGCAAACTAACCAACTAACACCTACACTTATTCTGGATTGGAAATC TACTAGCATGTAGCAGTAACCACAACTAAAACACTAAACAAAGTAGAGAT CGTTGCTCAAAGTATTATGCAATCCAAATCATTCAACCCGCTACCTTGCT GATTCCACAGATTCGAAAGATTGGCTCGTCTACTGCAGTCTGTACATGCA GGACTATGACTATGACTACAAGCACCGAAAGAACTAAGGCAAGAAATCGG GTGGAGAGCCTTCTCCAAACAGAGACATACACAGCGTGATATAAGTTAGA GTTGCAGAAGGTGGAACAACTAAATTATTTATTAACTACAAAGCTCGCCT GCTCATCGCGGAAACCAAATTATGTATAGATGCCATATGGAGCGATAGTT TAGGAAGTATGTATGATTTACTTAGGCTAAACGAATGTCGACAAATATAC TGTGTTAGGAATGCAAGCTCTCTTGTTTAATCGCAATAAAGAATAGTATT CCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bwa-RA | 2343 | bwa-RA | 65..2329 | 36..2300 | 11325 | 100 | Plus |
bwa.a | 1659 | bwa.a | 112..1305 | 36..1229 | 5970 | 100 | Plus |
bwa.b | 1569 | bwa.b | 24..1221 | 36..1229 | 5905 | 99.6 | Plus |
bwa.a | 1659 | bwa.a | 1303..1645 | 1958..2300 | 1715 | 100 | Plus |
bwa.b | 1569 | bwa.b | 1219..1561 | 1958..2300 | 1715 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 20070720..20072085 | 935..2300 | 6770 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 20064751..20065254 | 36..541 | 2450 | 99.4 | Plus |
chr2L | 23010047 | chr2L | 20067415..20067672 | 541..798 | 1290 | 100 | Plus |
chr2L | 23010047 | chr2L | 20067744..20067882 | 798..936 | 695 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20072352..20073717 | 935..2300 | 6830 | 100 | Plus |
2L | 23513712 | 2L | 20066393..20066898 | 36..541 | 2530 | 100 | Plus |
2L | 23513712 | 2L | 20069047..20069304 | 541..798 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 20069376..20069514 | 798..936 | 695 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20072352..20073717 | 935..2300 | 6830 | 100 | Plus |
2L | 23513712 | 2L | 20066393..20066898 | 36..541 | 2530 | 100 | Plus |
2L | 23513712 | 2L | 20069047..20069304 | 541..798 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 20069376..20069514 | 798..936 | 695 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 20064751..20065254 | 36..541 | 99 | -> | Plus |
chr2L | 20067416..20067672 | 542..798 | 100 | -> | Plus |
chr2L | 20067745..20067882 | 799..936 | 100 | -> | Plus |
chr2L | 20070722..20072087 | 937..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 1..852 | 404..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 1..852 | 404..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 1..852 | 404..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 1..852 | 404..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 1..852 | 404..1255 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 24..2290 | 36..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 24..2290 | 36..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 3..2269 | 36..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 24..2290 | 36..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bwa-RA | 3..2269 | 36..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20066393..20066898 | 36..541 | 100 | -> | Plus |
2L | 20069048..20069304 | 542..798 | 100 | -> | Plus |
2L | 20069377..20069514 | 799..936 | 100 | -> | Plus |
2L | 20072354..20073719 | 937..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20066393..20066898 | 36..541 | 100 | -> | Plus |
2L | 20069048..20069304 | 542..798 | 100 | -> | Plus |
2L | 20069377..20069514 | 799..936 | 100 | -> | Plus |
2L | 20072354..20073719 | 937..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20066393..20066898 | 36..541 | 100 | -> | Plus |
2L | 20069048..20069304 | 542..798 | 100 | -> | Plus |
2L | 20069377..20069514 | 799..936 | 100 | -> | Plus |
2L | 20072354..20073719 | 937..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 20066393..20066898 | 36..541 | 100 | -> | Plus |
arm_2L | 20069048..20069304 | 542..798 | 100 | -> | Plus |
arm_2L | 20069377..20069514 | 799..936 | 100 | -> | Plus |
arm_2L | 20072354..20073719 | 937..2302 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20066393..20066898 | 36..541 | 100 | -> | Plus |
2L | 20069048..20069304 | 542..798 | 100 | -> | Plus |
2L | 20069377..20069514 | 799..936 | 100 | -> | Plus |
2L | 20072354..20073719 | 937..2302 | 99 | Plus |
Translation from 403 to 1254
> RE26924.hyp MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTI*
Translation from 403 to 1254
> RE26924.pep MGGMGGGGLLDIYAMAWEHLRPGSSPVDWCEGNYLISSNIAEFVNTFSNF LFILLPPVLIMLFKEYGRFVTPGIHVIWVLLIVVGLSSMYFHATLSLIGQ LLDELAILWVFMAAFSLFYPKRYYPKFVKNDRKTFSWLMLLSAIAATGLS WWKPIVNAFVLMFMSVPTMVMLYTELQRVSDQRVYRLGIRSTTVWAVAVF CWINDRIFCEAWSSINFPYLHGFWHIFIFIAAYTVLVLFAYFYVESELPQ RQPLLKYWPKNEFEFGIPFISIRNPGKALRNTI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14446-PA | 284 | GF14446-PA | 1..284 | 1..283 | 1455 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21218-PA | 283 | GG21218-PA | 1..283 | 1..283 | 1475 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13657-PA | 278 | GH13657-PA | 1..278 | 4..283 | 1309 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bwa-PA | 283 | CG13969-PA | 1..283 | 1..283 | 1515 | 100 | Plus |
bwa-PB | 300 | CG13969-PB | 1..275 | 1..275 | 1476 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17409-PA | 278 | GI17409-PA | 1..278 | 4..283 | 1322 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26347-PA | 164 | GL26347-PA | 19..164 | 11..156 | 741 | 96.6 | Plus |
Dper\GL26348-PA | 128 | GL26348-PA | 3..100 | 179..276 | 516 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12666-PA | 291 | GA12666-PA | 19..291 | 11..283 | 1386 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17388-PA | 283 | GM17388-PA | 1..283 | 1..283 | 1484 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24242-PA | 178 | GD24242-PA | 1..178 | 1..178 | 916 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18341-PA | 278 | GJ18341-PA | 1..278 | 4..283 | 1309 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18730-PA | 290 | GK18730-PA | 16..290 | 9..283 | 1379 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13293-PA | 283 | GE13293-PA | 1..283 | 1..283 | 1484 | 99.6 | Plus |