Clone RE26973 Report

Search the DGRC for RE26973

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:269
Well:73
Vector:pFlc-1
Associated Gene/TranscriptMFS16-RB
Protein status:RE26973.pep: gold
Preliminary Size:2553
Sequenced Size:2336

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10069 2002-10-17 Blastp of sequenced clone
CG10069 2003-01-01 Sim4 clustering to Release 3
CG10069 2008-04-29 Release 5.5 accounting
CG10069 2008-08-15 Release 5.9 accounting
CG10069 2008-12-18 5.12 accounting

Clone Sequence Records

RE26973.complete Sequence

2336 bp (2336 high quality bases) assembled on 2002-10-17

GenBank Submission: BT001590

> RE26973.complete
AGTGTGTGTTTAACGGTAATATTAAGTGGCTAAAGCTGTTTTTCAATGTC
GCCGTGTTTATTCCCAAGCAATCTGTTAGATTCCGCAAGAAATTCCATCT
GGTGGCGACAACAAACAAAGACTTAGAAATCCGACAAGCGTCGACTATGA
AATACTCTGTAAATTGATGAGGACAAGTGAACAGAAAAGTAGCTGGCATT
ACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCAC
TTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATT
GGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCA
TCCGGGCTGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCC
CGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGC
CTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGG
TGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGT
GGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCT
GGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTT
TCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATC
CTCACCGGAGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATAT
CCATAGTTTGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCC
AGACGACCGGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGA
AAGTCGAAACGCGGGCTCATTTTTGGTATATGGAACAGTCATACGTCTAT
TGGAAACATTCTTGGCACGCTGATAGCGGCGCATTATGTGGAATCCGATT
GGGCGCTGTCGTTTGTGGTACCCGGCATTATCATTGCAGCCGTTGGATTT
TTACTCTTCCTTTTCCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCC
ACAAGCCGGACAGCATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAAC
AGGACGACGAGGAGCAGGTGCGCCATAACGATGCGGAAATCAACTATAGA
TCTGCTCCCACCGAACGTACTCCAATCCTTCCACGATCTCAACCAGAGGC
GGTGCCAAGGGGTCGCGGACGTCCCATCAGTCTGATCGATGCTTTATTCA
TACCCGGTGTGGTAGAGTTTTCGCTGTGTTTGTTCTTTACCAAGCTGGTG
AGCTACACCTTCATGTACTGGCTGCCACTTTACATACAAAAATCCAGCAC
ATTGGGTCCAGAACTGTCCGCTGATTTGTCCACTCTTTTCGATGTGGGTG
GTATTTTGGGTGCAATAGCTGCGGGCTATCTATCAGATGTGAGCGGAATG
TCGGCCACCGTCTGCACAGGCATGTTGTTCGTTGCCTCGCCCATTCTGCT
GATGTATCAACAATATGGTGCATTGTCGATGACAATCAGCATAGTGCTCT
TGATTGTGGTCGGCATCTTTGTGAACGGACCATATGCCCTGATTACAACC
TCTGTAAGTGCAGAGCTGGGCCAGCACAGCTCCTTGGAGGGAAATGCCAA
TGCTCTGGCCACGGTGACGGCCATTATCGATGGTACTGGGTCAATCGGAG
CGGCAGTTGGTCCACTGCTTGCCGGCCTTATCTCCACCGCCGGATGGCAG
TATGTCTTCCACATGCTCATCGCTGCCGACATCATTGCCATGGTGCTGCT
GGGGCGACTGGTCTTCAAGGAGTTCGCTGCACTGCGTCGTGCATCGCATC
GTATTCGGATTGAATAGCAGGAAGAAGCTGAAGCGGATGTGGTTTGACCA
TATATATATTTTTGTTTCTAGCGTTCTCTGTACATACCATAGCATTTGTA
TAGCTAACATAAAGAACGTTTTCTTTTCATTCGAGAGCATATCAGAGTGT
TTCTGATCCTAGTTTTACCCATACATGTCAATACCTAATGTTATTTTAAA
TGGAATGTTTACCATCATCTTAGGCTATCCATCAAGTTTACAATTTTGAT
ATATTACCTACATACATATATATATATATATATATATACATACATCTATG
TTGTAATCTTGTGTGTGCGCGCGTGTGTCAGAGTCTCCTCGTTTTAAGTG
CCGAACTATCATTAGTACTAGCGTAATTCTACTGCTATGTAAATACACTT
TATCGTACACTTTTCGTACCAATAAAACCGAATTTGACTGTTCTCCGCGG
CAGTACAATTTCTCAATGGCAAAAAAAAAAAAAAAA

RE26973.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-RB 2454 CG10069-RB 92..2411 1..2320 11600 100 Plus
CG10069.b 2331 CG10069.b 92..2331 79..2318 11200 100 Plus
CG10069-RC 2708 CG10069-RC 534..2665 189..2320 10660 100 Plus
CG10069-RC 2708 CG10069-RC 80..270 1..191 955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17171350..17172174 1496..2320 4050 99.4 Plus
chr2R 21145070 chr2R 17170037..17170607 566..1136 2765 98.9 Plus
chr2R 21145070 chr2R 17169482..17169707 189..414 1115 99.6 Plus
chr2R 21145070 chr2R 17170876..17171088 1135..1347 1065 100 Plus
chr2R 21145070 chr2R 17168872..17169062 1..191 925 99 Plus
chr2R 21145070 chr2R 17169826..17169977 415..566 745 99.3 Plus
chr2R 21145070 chr2R 17171145..17171293 1347..1495 745 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21284855..21285679 1496..2320 4125 100 Plus
2R 25286936 2R 21283542..21284112 566..1136 2855 100 Plus
2R 25286936 2R 21282987..21283212 189..414 1130 100 Plus
2R 25286936 2R 21284381..21284593 1135..1347 1065 100 Plus
2R 25286936 2R 21282377..21282567 1..191 955 100 Plus
2R 25286936 2R 21283331..21283482 415..566 760 100 Plus
2R 25286936 2R 21284650..21284798 1347..1495 745 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21286054..21286878 1496..2320 4125 100 Plus
2R 25260384 2R 21284741..21285311 566..1136 2855 100 Plus
2R 25260384 2R 21284186..21284411 189..414 1130 100 Plus
2R 25260384 2R 21285580..21285792 1135..1347 1065 100 Plus
2R 25260384 2R 21283576..21283766 1..191 955 100 Plus
2R 25260384 2R 21284530..21284681 415..566 760 100 Plus
2R 25260384 2R 21285849..21285997 1347..1495 745 100 Plus
Blast to na_te.dros performed 2019-03-15 14:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 815..872 2144..2088 134 72.4 Minus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5105..5256 2162..2012 127 58.3 Minus
Tabor 7345 Tabor TABOR 7345bp 2261..2355 2048..2141 121 61.5 Plus

RE26973.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:08:58 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17168872..17169059 1..188 98 -> Plus
chr2R 17169482..17169707 189..414 99 -> Plus
chr2R 17169826..17169977 415..566 99 -> Plus
chr2R 17170038..17170606 567..1135 98 -> Plus
chr2R 17170877..17171087 1136..1346 100 -> Plus
chr2R 17171145..17171293 1347..1495 100 -> Plus
chr2R 17171350..17172174 1496..2320 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:05:59 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 1..1701 167..1867 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:10:39 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 1..1701 167..1867 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:20:16 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1..1701 167..1867 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:01:30 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 1..1701 167..1867 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:51:44 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1..1701 167..1867 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:32:02 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 1..2310 1..2310 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:10:39 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 1..2310 1..2310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:20:16 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 80..2399 1..2320 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:01:30 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 1..2310 1..2310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:51:44 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 80..2399 1..2320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:08:58 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21282377..21282564 1..188 100 -> Plus
2R 21283331..21283482 415..566 100 -> Plus
2R 21282987..21283212 189..414 100 -> Plus
2R 21283543..21284111 567..1135 100 -> Plus
2R 21284382..21284592 1136..1346 100 -> Plus
2R 21284650..21284798 1347..1495 100 -> Plus
2R 21284855..21285679 1496..2320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:08:58 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21282377..21282564 1..188 100 -> Plus
2R 21283331..21283482 415..566 100 -> Plus
2R 21282987..21283212 189..414 100 -> Plus
2R 21283543..21284111 567..1135 100 -> Plus
2R 21284382..21284592 1136..1346 100 -> Plus
2R 21284650..21284798 1347..1495 100 -> Plus
2R 21284855..21285679 1496..2320 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:08:58 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21282377..21282564 1..188 100 -> Plus
2R 21283331..21283482 415..566 100 -> Plus
2R 21282987..21283212 189..414 100 -> Plus
2R 21283543..21284111 567..1135 100 -> Plus
2R 21284382..21284592 1136..1346 100 -> Plus
2R 21284650..21284798 1347..1495 100 -> Plus
2R 21284855..21285679 1496..2320 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:20:16 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17169882..17170069 1..188 100 -> Plus
arm_2R 17170492..17170717 189..414 100 -> Plus
arm_2R 17170836..17170987 415..566 100 -> Plus
arm_2R 17171048..17171616 567..1135 100 -> Plus
arm_2R 17171887..17172097 1136..1346 100 -> Plus
arm_2R 17172155..17172303 1347..1495 100 -> Plus
arm_2R 17172360..17173184 1496..2320 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:33:07 Download gff for RE26973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21284186..21284411 189..414 100 -> Plus
2R 21284530..21284681 415..566 100 -> Plus
2R 21284742..21285310 567..1135 100 -> Plus
2R 21285581..21285791 1136..1346 100 -> Plus
2R 21285849..21285997 1347..1495 100 -> Plus
2R 21286054..21286878 1496..2320 100   Plus
2R 21283576..21283763 1..188 100 -> Plus

RE26973.pep Sequence

Translation from 166 to 1866

> RE26973.pep
MRTSEQKSSWHYSQPKRIREPSHLDEQHLHLAHCPRRSMRASLGLGRTRK
MSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSVFVLTFLAYACYH
MCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDATTLFGMLDSAFL
FSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFGIARTSNIHSLWY
FIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGIWNSHTSIGNILG
TLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQPEIVGCYPQAGQH
ERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPILPRSQPEAVPRGR
GRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPLYIQKSSTLGPEL
SADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLFVASPILLMYQQY
GALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHSSLEGNANALATV
TAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAADIIAMVLLGRLVF
KEFAALRRASHRIRIE*

RE26973.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12808-PA 528 GF12808-PA 1..528 51..566 2358 88.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22106-PA 528 GG22106-PA 1..528 39..566 2731 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21864-PA 530 GH21864-PA 7..530 47..566 2234 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-PB 566 CG10069-PB 1..566 1..566 2915 100 Plus
MFS16-PD 528 CG10069-PD 1..528 39..566 2702 100 Plus
MFS16-PC 528 CG10069-PC 1..528 39..566 2702 100 Plus
MFS16-PA 528 CG10069-PA 1..528 39..566 2702 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20365-PA 522 GI20365-PA 1..522 51..566 2130 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11333-PA 399 GL11333-PA 1..398 51..443 1856 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24689-PA 484 GA24689-PA 1..484 51..566 2121 79.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15825-PA 566 GM15825-PA 1..566 1..566 2955 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11582-PA 551 GD11582-PA 1..551 1..566 2855 95.9 Plus
Dsim\GD15444-PA 139 GD15444-PA 1..139 428..566 696 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22092-PA 522 GJ22092-PA 1..522 51..566 2178 81.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21661-PA 514 GK21661-PA 1..514 51..566 2220 81.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12187-PA 515 GE12187-PA 1..515 51..566 2672 98.3 Plus

RE26973.hyp Sequence

Translation from 166 to 1866

> RE26973.hyp
MRTSEQKSSWHYSQPKRIREPSHLDEQHLHLAHCPRRSMRASLGLGRTRK
MSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSVFVLTFLAYACYH
MCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDATTLFGMLDSAFL
FSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFGIARTSNIHSLWY
FIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGIWNSHTSIGNILG
TLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQPEIVGCYPQAGQH
ERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPILPRSQPEAVPRGR
GRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPLYIQKSSTLGPEL
SADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLFVASPILLMYQQY
GALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHSSLEGNANALATV
TAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAADIIAMVLLGRLVF
KEFAALRRASHRIRIE*

RE26973.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-PB 566 CG10069-PB 1..566 1..566 2915 100 Plus
MFS16-PD 528 CG10069-PD 1..528 39..566 2702 100 Plus
MFS16-PC 528 CG10069-PC 1..528 39..566 2702 100 Plus
MFS16-PA 528 CG10069-PA 1..528 39..566 2702 100 Plus