BDGP Sequence Production Resources |
Search the DGRC for RE26983
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 269 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Psf2-RB |
Protein status: | RE26983.pep: gold |
Preliminary Size: | 612 |
Sequenced Size: | 825 |
Gene | Date | Evidence |
---|---|---|
CG18013 | 2001-12-14 | Blastp of sequenced clone |
CG18013 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18013 | 2003-01-01 | Sim4 clustering to Release 3 |
Psf2 | 2008-04-29 | Release 5.5 accounting |
Psf2 | 2008-08-15 | Release 5.9 accounting |
Psf2 | 2008-12-18 | 5.12 accounting |
825 bp (825 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071234
> RE26983.complete GGATGTTCCCGCATTTGTTTTGTTTGTTTATAGCAATTATGGATCCTTCA ATTATTGAATTTATTGGCGAAAAATGCATGATCAGCATAATACCGAACTT CAGCAACGAGCCTCTGCACCTGATATACGGACCTGTGGGCCCTTTCCGAG CCGGTTTTCCCGTCTTCGTGCCCCTGTGGATGGCCACGCATCTGCGCAAG CAACAAAAGTGCCGAATTGTACCTCCAGAATGGATGGACATGGATATATT GGAGGAAATCAAGGAGGAGGAAAAGCGCTCAAAGTTCTTTACCAAAATGC CCTGTGAGCATTACATGGTAGTGGCCCAGTTGGTCATGAGCACGGCTCCG GATGACGTTCCGCGTTGCGAGGAGCTGCGCACTGTGATCAAGGACATCTT CGACATACGCGAGTCCAAGCTGCGCACTTCGATCGACGCCTTTATCAAGG GAGAGGGCACATATGCAAAGCTAGACAACCTCACGCTTCTGGAGATCCAC AGCGTGAGACCCATTCTGCCCTATTCCCTGGACCACATAGCACGGTACCA GCGCACGGCCACTGCGTCTCAAAGGGACACCTCCATGCTAAGTGCATCCA TGGCAGGCTCCAGTTCGGGTCCGAACAGTAACTCTCTGTTTTCTCAGTGA TTATTCCAGTCAAACAACATTGTTGGGAACATTTAAGATAATAGATTTAG TTATTAGCAGGAGCTTATGTAGCCTGTAGTCATTAAACCTCTCAAAAGTT CAAAAATATTTGTATGCTTAAAATTAAATATAAATGCTTTCAGAAAATTA AAAAAAGCAAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4385321..4385845 | 284..808 | 99 | <- | Minus |
chr2L | 4385904..4386186 | 1..283 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RA | 1..648 | 3..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RA | 1..648 | 3..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RB | 1..612 | 39..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RA | 1..648 | 3..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RB | 1..612 | 39..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RA | 1..807 | 2..808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RA | 1..807 | 2..808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RB | 25..831 | 1..807 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RA | 1..807 | 2..808 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Psf2-RB | 25..831 | 1..807 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4386181..4386705 | 284..808 | 99 | <- | Minus |
2L | 4386764..4387046 | 1..283 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4386181..4386705 | 284..808 | 99 | <- | Minus |
2L | 4386764..4387046 | 1..283 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4386181..4386705 | 284..808 | 99 | <- | Minus |
2L | 4386764..4387046 | 1..283 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4386181..4386705 | 284..808 | 99 | <- | Minus |
arm_2L | 4386764..4387046 | 1..283 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4386181..4386705 | 284..808 | 99 | <- | Minus |
2L | 4386764..4387046 | 1..283 | 99 | Minus |
Translation from 2 to 649
> RE26983.pep MFPHLFCLFIAIMDPSIIEFIGEKCMISIIPNFSNEPLHLIYGPVGPFRA GFPVFVPLWMATHLRKQQKCRIVPPEWMDMDILEEIKEEEKRSKFFTKMP CEHYMVVAQLVMSTAPDDVPRCEELRTVIKDIFDIRESKLRTSIDAFIKG EGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQRTATASQRDTSMLSASM AGSSSGPNSNSLFSQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24109-PA | 203 | GF24109-PA | 1..203 | 13..215 | 1040 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24383-PA | 203 | GG24383-PA | 1..203 | 13..215 | 1072 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13682-PA | 203 | GH13682-PA | 1..203 | 13..215 | 905 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Psf2-PC | 203 | CG18013-PC | 1..203 | 13..215 | 1058 | 100 | Plus |
Psf2-PB | 203 | CG18013-PB | 1..203 | 13..215 | 1058 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17967-PA | 205 | GI17967-PA | 1..205 | 13..215 | 926 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15443-PA | 203 | GL15443-PA | 1..203 | 13..215 | 1060 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26065-PA | 203 | GA26065-PA | 1..203 | 13..215 | 1060 | 97.5 | Plus |
Dpse\GA25496-PA | 190 | GA25496-PA | 1..190 | 26..215 | 994 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18097-PA | 203 | GM18097-PA | 1..203 | 13..215 | 1085 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22714-PA | 203 | GD22714-PA | 1..203 | 13..215 | 1085 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16307-PA | 215 | GJ16307-PA | 1..215 | 13..215 | 885 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24694-PA | 212 | GK24694-PA | 1..212 | 13..215 | 909 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14744-PA | 203 | GE14744-PA | 1..203 | 13..215 | 1074 | 99 | Plus |
Translation from 2 to 649
> RE26983.hyp MFPHLFCLFIAIMDPSIIEFIGEKCMISIIPNFSNEPLHLIYGPVGPFRA GFPVFVPLWMATHLRKQQKCRIVPPEWMDMDILEEIKEEEKRSKFFTKMP CEHYMVVAQLVMSTAPDDVPRCEELRTVIKDIFDIRESKLRTSIDAFIKG EGTYAKLDNLTLLEIHSVRPILPYSLDHIARYQRTATASQRDTSMLSASM AGSSSGPNSNSLFSQ*