Clone RE27042 Report

Search the DGRC for RE27042

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:270
Well:42
Vector:pFlc-1
Associated Gene/TranscriptIlp4-RA
Protein status:RE27042.pep: gold
Preliminary Size:405
Sequenced Size:835

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6736 2001-12-14 Blastp of sequenced clone
CG6736 2002-01-01 Sim4 clustering to Release 2
CG6736 2003-01-01 Sim4 clustering to Release 3
Ilp4 2008-04-29 Release 5.5 accounting
Ilp4 2008-08-15 Release 5.9 accounting
Ilp4 2008-12-18 5.12 accounting

Clone Sequence Records

RE27042.complete Sequence

835 bp (835 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071235

> RE27042.complete
TGTGCGCCGGCCAACTCCAAGGATCAGTATCATTTGGCATGCCCAGCGAT
CGGTTTGCCAAGAGCACGAGAAGTTCGAGATAGGACCCAGAGATACCAGA
GATAAAGGAGGCATACCTTTTATGCCCGGTGAGAGCACGGACGGCGGAGT
GAAAGATCGAGCAGGATGAGCCTGATTAGACTGGGACTGGCGCTGCTGCT
CCTGCTGGCCACCGTGTCGCAGTTACTGCAGCCGGTCCAGGGACGCCGAA
AGATGTGCGGCGAGGCTCTGATCCAGGCACTGGATGTGATTTGTGTTAAT
GGATTTACACGCCGTGTCAGGCGGAGCAGTGCGTCTAAGGATGCTAGAGT
GCGAGACCTTATCCGTAAGCTACAGCAGCCGGATGAGGACATTGAACAGG
AAACGGAAACGGGAAGGTTAAAGCAGAAGCATACGGATGCGGATACGGAG
AAGGGTGTGCCACCGGCCGTCGGAAGTGGACGAAAGTTGCGACGCCATCG
GCGACGCATCGCCCACGAGTGTTGCAAGGAGGGCTGCACCTACGACGATA
TACTGGACTACTGCGCCTGATGACCAGGATGGCAAAACAAAACAAATAAA
AACCAGAAACCAGATCCCAAAAACCAAGTACCAGATGAACACGACATGGC
TGAGATTTTGTGTGGCGGCACGGGGAAAACACCCGACGACCGGCAGGCTA
TTTGCAATTCATTTTCCTACTACACTTAACCCCTAACTATAAACGTAATC
GTATTTCCAAATATTTCATTGTAAAATTTCTAGTGGAGGCAAATAAAGTT
ACTCTCCAAGCAGCAGCAGAAAAAAAAAAAAAAAA

RE27042.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp4-RA 1027 Ilp4-RA 114..937 4..827 4105 99.8 Plus
nc_11749.a 616 nc_11749.a 1..616 26..649 2975 98.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9795159..9795647 819..331 2445 100 Minus
chr3L 24539361 chr3L 9795708..9796035 331..4 1640 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9803391..9803887 827..331 2470 99.8 Minus
3L 28110227 3L 9803948..9804275 331..4 1640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9796491..9796987 827..331 2470 99.7 Minus
3L 28103327 3L 9797048..9797375 331..4 1640 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:06:41 has no hits.

RE27042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:07:28 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9795159..9795646 332..819 100 <- Minus
chr3L 9795708..9796038 1..331 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:02 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..405 166..570 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:42 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..405 166..570 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:58 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..405 166..570 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:52 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..405 166..570 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:15 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..405 166..570 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:43:28 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..819 1..819 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:42 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..819 1..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:58 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..804 16..819 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:52 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..819 1..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:15 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp4-RA 1..804 16..819 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:28 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9803399..9803886 332..819 100 <- Minus
3L 9803948..9804278 1..331 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:28 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9803399..9803886 332..819 100 <- Minus
3L 9803948..9804278 1..331 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:28 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9803399..9803886 332..819 100 <- Minus
3L 9803948..9804278 1..331 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:58 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9796499..9796986 332..819 100 <- Minus
arm_3L 9797048..9797378 1..331 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:24 Download gff for RE27042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9796499..9796986 332..819 100 <- Minus
3L 9797048..9797378 1..331 99   Minus

RE27042.pep Sequence

Translation from 165 to 569

> RE27042.pep
MSLIRLGLALLLLLATVSQLLQPVQGRRKMCGEALIQALDVICVNGFTRR
VRRSSASKDARVRDLIRKLQQPDEDIEQETETGRLKQKHTDADTEKGVPP
AVGSGRKLRRHRRRIAHECCKEGCTYDDILDYCA*

RE27042.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25125-PA 123 GF25125-PA 1..123 1..134 380 59 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14005-PA 140 GG14005-PA 15..140 15..134 477 85.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16016-PA 119 GH16016-PA 12..119 14..134 217 44.6 Plus
Dgri\GH15431-PA 156 GH15431-PA 47..154 25..133 133 29.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp4-PA 134 CG6736-PA 1..134 1..134 688 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12280-PA 112 GI12280-PA 18..112 22..134 163 43.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16361-PA 149 GL16361-PA 18..149 13..134 216 38.2 Plus
Dper\GL16325-PA 115 GL16325-PA 20..115 15..134 214 44.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19821-PA 115 GA19821-PA 20..115 15..134 214 44.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24839-PA 134 GM24839-PA 1..134 1..134 674 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12891-PA 134 GD12891-PA 1..134 1..134 674 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13217-PA 126 GJ13217-PA 3..126 4..134 252 47.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11757-PA 139 GK11757-PA 25..139 22..134 237 44 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Ilp4-PA 137 GE20300-PA 16..137 15..134 409 81.1 Plus

RE27042.hyp Sequence

Translation from 165 to 569

> RE27042.hyp
MSLIRLGLALLLLLATVSQLLQPVQGRRKMCGEALIQALDVICVNGFTRR
VRRSSASKDARVRDLIRKLQQPDEDIEQETETGRLKQKHTDADTEKGVPP
AVGSGRKLRRHRRRIAHECCKEGCTYDDILDYCA*

RE27042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp4-PA 134 CG6736-PA 1..134 1..134 688 100 Plus