Clone RE27077 Report

Search the DGRC for RE27077

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:270
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG9505-RA
Protein status:RE27077.pep: gold
Sequenced Size:2324

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9505 2003-01-01 Sim4 clustering to Release 3
CG9505 2008-04-29 Release 5.5 accounting
CG9505 2008-08-15 Release 5.9 accounting
CG9505 2008-12-18 5.12 accounting

Clone Sequence Records

RE27077.complete Sequence

2324 bp (2324 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021291

> RE27077.complete
AGTTGAATTTGAGCAAGCGGCAAACGCGCAACACCCGTCCTGAAGCATCG
ATAAATCGGATTCGGAATCGGAATCGCCAAACTCGTCGGGTTAAAATACA
ATCAGCAGCTTTACTTTGAAATGATCGTATCTAAGCACCTGAGAAAAGAA
CTTTTTAAAGTGCCGCAGTACAGGTGCAGCTTATGAATCTCGCCGAAGTG
AAATAAACGTGCGGAAAGATCAGCTATTCCTTTGCCCGATAGTAAATCCA
AGAAGCAATGGTGCAAAATCTGTGGACTGCCCTCCTTCTGCTGGGCAGTG
CCACCTGCGGTTCGAGTGTGCCGGTCAAGGCAAATGATCCGGAACAGAGT
TGTCCGTACCTCGGAGAGTGCAATTCCACGATCAATCAGCAGCACATCGA
TACGCTGATGTCCTACGTGGACAGCGAAAAAAATCCCTGCGAGGATTTCT
ATGCCTACGCCTGCGGAAAATGGCGGGCGAAGCATGGAAGCCACACAACC
GCCACGATGATCAGCGAATCGCAAATTAACCGCCAGTACGAGGATTTGTT
CCTACAACTGCTGAGGAATCCCAGCGCCCCGGAATATGGATACCCCATGT
TCGCCAAGGTGTTGGCCCATTACCAGTCATGCATCGCGCTGGAGAAGCCG
GATCTGAGGCGATACATCGAGCTACTGGACCGGGATCTGCTCGCCTCCTT
AAACTCCACACACTGGATGCACCTGCTGGCAGCTCTGGGGCGCTACGGCT
ACCACGGTCACTACGTCCAAGTAGAGGTACGTTGGTACAACGCCACCCAT
CACATGATCTTCCTGCTGCCGCACAATCGCCACCTAAACCTGAGTCTCAC
GCAAGACATCTATGATGCGCTGAGTCAGGATGGCTCCTCCTGGCCACCGC
TCCACCAGCTACAGGAGCAGTTCAGAAGTTTGGAGCAGAACTTGGTGCGA
CTGGCTAAGCCCCATTCGGCGGACGATACCTTCCGGAATTACAGTCTGGA
TCAGATTCGGACGGAGGTGCCGGGTCTGCATTGGGACGAGGCGCTGAGGA
CACAGCTGGGCAGATCGGTGCCGGGGAATCATGTCTTCCAGGTGGACGAC
TTGGACGCGATCGAGGGGCTTGTGGAGTACCTCAATACGGTAGATACTCT
GCTGCTCAATCGGTACAGCCTGGCAAGATTTCTCAGCCACCTGCTTGAGC
TGCCACATAACCCGCTGGCCACTTGGGAGTCCGGACAGCGGTCGCGGGGA
AGGAACTGTATTCGTCACATGCGCCGCTCTGTTTACCTGCCGATGAACTA
CGTCTACGAGAGAAGTTTCTACTCCCGGCGCCGCCACGCGGATGAGCTGG
TCATCCACAGCGTCTTCCAGCAGCTGCAGAGTCAGCTGGAGCTGCGGGTC
CAGCACAACGCCTTCAATCTAAGTCAGGATCTGGTGAAATCGCTGCAGGC
AAAGGTGCACCAGATGCGCATCAATGTGGGCAACCTACCGCCCAATGTGA
CGGAGCAATTCTATTGGGACAGCGACCGGCGGTGGAGCGTGGGCAGGGAC
TTCTACGAGAATCACCTGAACAGCCTGCTCTACTACTACACGCTCGTCGC
CGATTTGGAAAGCAGCTCGGACCAGGAGGAGCGGGACATCTGGTACAGCT
TCAATATGCATACGCCCGAGTTTCCCGACAACATCGATGCCACGCCGTAC
TTCTACTGCCTGGGCAACATCATCTTCGTGCCGTACTCCTACGTAAAGCG
TCCCTTCTTCGATGCCAACTTCTGGCCAGCGCTGCTCTACGGTGATCTGG
CCAACACCCTGGGCCACGAGATCATGCACGCCTTCGACACCGATCTGGTG
GACTACGATGCGCAGGGTAATCTGCGTAACTTTAGCGACCAGTTGGGCGA
AGTGGAGCTCTACAACGGAGCGGTTGGATGCCTGAACAGCAGCGCTGTTA
TGCTAAACGAGCGCACCTCCGACGTCAGCGGATCCCGGCTGGCCATGCAA
ACCTACGGTGGCGACTGGCTCACTCGGTCGGGCAACGGGCGTCTGTACTT
CCTCCAGTTCGCCCACTTCTTCTGCGGCGACGAGGGCGACCAGTACCATG
ACTCCGGCAGCCAGCGGCTGAACTACGCCCTCGGCCAGGTGCCGCAGTTC
GCAGAGGTGTTCCGGTGCCATGTTGGCTCCGGAATGACCAGCGCGGACCA
GTGTCCCTTCTGGTGAGGGATGCCCAGAGACGGTCGGTGACTCCCACTGC
TAGTCGGTGTATAGCTTTAATTAGGAACCCAAGTATTGTGAATAAACTTC
TATGCTTAACAAAAAAAAAAAAAA

RE27077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9505-RA 2312 CG9505-RA 1..2312 1..2312 11545 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6366879..6369186 1..2308 11525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6367884..6370195 1..2312 11545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6367884..6370195 1..2312 11545 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 22:41:50 has no hits.

RE27077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:42:52 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6366879..6369188 1..2310 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:04 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..1959 258..2216 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:46:50 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..1959 258..2216 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:41 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..1959 258..2216 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:27:52 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..1959 258..2216 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:19 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..1959 258..2216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:56:03 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..2310 1..2310 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:46:50 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..2310 1..2310 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:41 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 3..2309 1..2307 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:27:52 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 1..2310 1..2310 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:19 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
CG9505-RA 3..2309 1..2307 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:52 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6367884..6370193 1..2310 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:52 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6367884..6370193 1..2310 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:52 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6367884..6370193 1..2310 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:41 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6367884..6370193 1..2310 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:02:02 Download gff for RE27077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6367884..6370193 1..2310 99   Plus

RE27077.pep Sequence

Translation from 257 to 2215

> RE27077.pep
MVQNLWTALLLLGSATCGSSVPVKANDPEQSCPYLGECNSTINQQHIDTL
MSYVDSEKNPCEDFYAYACGKWRAKHGSHTTATMISESQINRQYEDLFLQ
LLRNPSAPEYGYPMFAKVLAHYQSCIALEKPDLRRYIELLDRDLLASLNS
THWMHLLAALGRYGYHGHYVQVEVRWYNATHHMIFLLPHNRHLNLSLTQD
IYDALSQDGSSWPPLHQLQEQFRSLEQNLVRLAKPHSADDTFRNYSLDQI
RTEVPGLHWDEALRTQLGRSVPGNHVFQVDDLDAIEGLVEYLNTVDTLLL
NRYSLARFLSHLLELPHNPLATWESGQRSRGRNCIRHMRRSVYLPMNYVY
ERSFYSRRRHADELVIHSVFQQLQSQLELRVQHNAFNLSQDLVKSLQAKV
HQMRINVGNLPPNVTEQFYWDSDRRWSVGRDFYENHLNSLLYYYTLVADL
ESSSDQEERDIWYSFNMHTPEFPDNIDATPYFYCLGNIIFVPYSYVKRPF
FDANFWPALLYGDLANTLGHEIMHAFDTDLVDYDAQGNLRNFSDQLGEVE
LYNGAVGCLNSSAVMLNERTSDVSGSRLAMQTYGGDWLTRSGNGRLYFLQ
FAHFFCGDEGDQYHDSGSQRLNYALGQVPQFAEVFRCHVGSGMTSADQCP
FW*

RE27077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14517-PA 598 GF14517-PA 6..598 54..652 1927 60.5 Plus
Dana\GF15392-PA 656 GF15392-PA 1..656 5..652 452 24 Plus
Dana\GF16985-PA 671 GF16985-PA 16..671 9..652 387 23.6 Plus
Dana\GF14519-PA 682 GF14519-PA 31..682 41..652 371 23.9 Plus
Dana\GF20227-PA 794 GF20227-PA 100..794 29..652 227 20.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10407-PA 652 GG10407-PA 1..652 1..652 3237 91.3 Plus
Dere\GG10409-PA 692 GG10409-PA 31..692 41..652 335 21.4 Plus
Dere\GG20308-PA 632 GG20308-PA 195..618 215..652 294 24.1 Plus
Dere\GG17740-PA 647 GG17740-PA 35..647 54..652 261 23.8 Plus
Dere\GG10248-PA 669 GG10248-PA 1..669 1..652 257 23.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10990-PA 647 GH10990-PA 1..647 2..652 1699 50.4 Plus
Dgri\GH13261-PA 678 GH13261-PA 60..678 47..652 429 24.9 Plus
Dgri\GH13639-PA 635 GH13639-PA 18..635 47..652 422 24.3 Plus
Dgri\GH25251-PA 658 GH25251-PA 35..658 47..652 408 24.8 Plus
Dgri\GH17137-PA 661 GH17137-PA 27..661 37..652 382 23.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nepl4-PA 652 CG9505-PA 1..652 1..652 3526 100 Plus
Nepl6-PA 655 CG9508-PA 26..655 43..652 410 25 Plus
Nepl5-PA 684 CG9507-PA 31..684 41..652 371 22 Plus
Nepl8-PA 619 CG4580-PA 17..608 43..638 324 23.9 Plus
Nep6-PB 655 CG3775-PB 29..655 44..652 310 25.7 Plus
Nep6-PA 655 CG3775-PA 29..655 44..652 310 25.7 Plus
Nepl10-PA 633 CG8550-PA 24..619 42..652 284 22.5 Plus
Nepl7-PB 669 CG15485-PB 1..669 1..652 252 22.6 Plus
Nepl7-PA 669 CG15485-PA 1..669 1..652 252 22.6 Plus
frma-PG 611 CG3239-PG 24..599 57..637 236 22.6 Plus
frma-PF 611 CG3239-PF 24..599 57..637 236 22.6 Plus
Nep3-PC 786 CG9565-PC 61..786 1..652 216 20.5 Plus
Nep3-PB 786 CG9565-PB 61..786 1..652 216 20.5 Plus
Nep3-PA 786 CG9565-PA 61..786 1..652 216 20.5 Plus
Nepl3-PA 629 CG31918-PA 22..615 38..637 202 19.8 Plus
Nep4-PC 978 CG4058-PC 475..978 185..652 196 20.7 Plus
Nep4-PB 978 CG4058-PB 475..978 185..652 196 20.7 Plus
Nep4-PA 1040 CG4058-PA 537..1040 185..652 196 20.7 Plus
Nep1-PD 849 CG5905-PD 388..849 226..652 180 21.2 Plus
Nep1-PC 849 CG5905-PC 388..849 226..652 180 21.2 Plus
Nep1-PA 849 CG5905-PA 388..849 226..652 180 21.2 Plus
Nep1-PB 849 CG5905-PB 388..849 226..652 180 21.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17505-PA 662 GI17505-PA 22..662 2..652 1653 49.2 Plus
Dmoj\GI17503-PA 863 GI17503-PA 230..863 43..652 514 26.3 Plus
Dmoj\GI10579-PA 669 GI10579-PA 45..669 54..652 439 24.7 Plus
Dmoj\GI11574-PA 689 GI11574-PA 38..689 48..652 350 22.9 Plus
Dmoj\GI19748-PA 582 GI19748-PA 1..562 47..637 341 23.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26265-PA 648 GL26265-PA 27..648 30..652 1962 60 Plus
Dper\GL26263-PA 958 GL26263-PA 321..958 43..652 493 24.8 Plus
Dper\GL25525-PA 676 GL25525-PA 31..676 41..652 392 23.5 Plus
Dper\GL10114-PA 919 GL10114-PA 37..586 54..607 310 23.4 Plus
Dper\GL22967-PA 676 GL22967-PA 40..676 50..652 240 22.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21840-PA 648 GA21840-PA 27..648 30..652 1963 60 Plus
Dpse\GA28099-PA 956 GA28099-PA 319..956 43..652 493 25.2 Plus
Dpse\GA21842-PA 676 GA21842-PA 31..676 41..652 392 23.5 Plus
Dpse\GA21158-PA 634 GA21158-PA 37..631 54..652 333 22.9 Plus
Dpse\GA17680-PA 676 GA17680-PA 40..676 50..652 241 23.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18623-PA 652 GM18623-PA 1..652 1..652 3407 96.8 Plus
Dsec\GM17944-PA 948 GM17944-PA 304..948 28..652 389 23.8 Plus
Dsec\GM26493-PA 661 GM26493-PA 11..661 7..652 332 23.8 Plus
Dsec\GM18625-PA 684 GM18625-PA 31..684 41..652 328 21.6 Plus
Dsec\GM11585-PA 655 GM11585-PA 38..655 54..652 307 24.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23405-PA 640 GD23405-PA 1..640 1..652 3245 92.7 Plus
Dsim\GD22581-PA 948 GD22581-PA 283..948 4..652 397 24.2 Plus
Dsim\GD24059-PA 638 GD24059-PA 14..638 40..652 364 24.2 Plus
Dsim\GD23407-PA 684 GD23407-PA 31..684 41..652 353 21.8 Plus
Dsim\GD21007-PA 658 GD21007-PA 11..658 7..652 346 23.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15205-PA 650 GJ15205-PA 4..650 5..652 1708 51.3 Plus
Dvir\GJ22936-PA 666 GJ22936-PA 30..666 40..652 439 24.5 Plus
Dvir\GJ12871-PA 699 GJ12871-PA 31..699 41..652 348 23 Plus
Dvir\GJ19503-PA 650 GJ19503-PA 18..638 40..637 234 23.3 Plus
Dvir\GJ24402-PA 670 GJ24402-PA 25..670 38..652 228 20.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15360-PA 646 GK15360-PA 4..646 5..652 1724 51.1 Plus
Dwil\GK15358-PA 952 GK15358-PA 322..952 43..652 512 26.5 Plus
Dwil\GK12098-PA 679 GK12098-PA 32..679 42..652 438 25.5 Plus
Dwil\GK14758-PA 685 GK14758-PA 31..685 41..652 368 23.1 Plus
Dwil\GK18887-PA 635 GK18887-PA 20..608 42..637 362 24.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13824-PA 653 GE13824-PA 1..653 1..652 3321 93.3 Plus
Dyak\GE18448-PA 676 GE18448-PA 24..676 6..652 440 24.6 Plus
Dyak\GE13111-PA 637 GE13111-PA 14..624 40..637 382 24.4 Plus
Dyak\GE10361-PA 662 GE10361-PA 34..662 43..652 380 24 Plus
Dyak\GE13846-PA 688 GE13846-PA 40..688 50..652 328 21.6 Plus

RE27077.hyp Sequence

Translation from 257 to 2215

> RE27077.hyp
MVQNLWTALLLLGSATCGSSVPVKANDPEQSCPYLGECNSTINQQHIDTL
MSYVDSEKNPCEDFYAYACGKWRAKHGSHTTATMISESQINRQYEDLFLQ
LLRNPSAPEYGYPMFAKVLAHYQSCIALEKPDLRRYIELLDRDLLASLNS
THWMHLLAALGRYGYHGHYVQVEVRWYNATHHMIFLLPHNRHLNLSLTQD
IYDALSQDGSSWPPLHQLQEQFRSLEQNLVRLAKPHSADDTFRNYSLDQI
RTEVPGLHWDEALRTQLGRSVPGNHVFQVDDLDAIEGLVEYLNTVDTLLL
NRYSLARFLSHLLELPHNPLATWESGQRSRGRNCIRHMRRSVYLPMNYVY
ERSFYSRRRHADELVIHSVFQQLQSQLELRVQHNAFNLSQDLVKSLQAKV
HQMRINVGNLPPNVTEQFYWDSDRRWSVGRDFYENHLNSLLYYYTLVADL
ESSSDQEERDIWYSFNMHTPEFPDNIDATPYFYCLGNIIFVPYSYVKRPF
FDANFWPALLYGDLANTLGHEIMHAFDTDLVDYDAQGNLRNFSDQLGEVE
LYNGAVGCLNSSAVMLNERTSDVSGSRLAMQTYGGDWLTRSGNGRLYFLQ
FAHFFCGDEGDQYHDSGSQRLNYALGQVPQFAEVFRCHVGSGMTSADQCP
FW*

RE27077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9505-PA 652 CG9505-PA 1..652 1..652 3526 100 Plus
CG42370-PA 655 CG9508-PA 26..655 43..652 410 25 Plus
CG9507-PA 684 CG9507-PA 31..684 41..652 371 22 Plus
CG4580-PA 619 CG4580-PA 17..608 43..638 324 23.9 Plus
CG8550-PA 633 CG8550-PA 24..619 42..652 284 22.5 Plus