Clone RE27148 Report

Search the DGRC for RE27148

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:271
Well:48
Vector:pFlc-1
Associated Gene/TranscriptCcp84Ac-RA
Protein status:RE27148.pep: gold
Sequenced Size:1076

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Ccp84Ac 2008-04-29 Release 5.5 accounting
Ccp84Ac 2008-04-29 Picked prior to 5.5
Ccp84Ac 2008-08-15 Release 5.9 accounting
Ccp84Ac 2008-12-18 5.12 accounting

Clone Sequence Records

RE27148.complete Sequence

1076 bp assembled on 2007-09-24

GenBank Submission: BT031013

> RE27148.complete
ATTGTTCAAAGCACGCACTCCACAGAAGGAGGACACAGTCTCGCTTCTTT
CGCTCTGCAATTTGCCAACCAACCTCAAACGCTCGCCAAATGGCTTTCAA
GCTCGTTGCTCTGGTTTCCTGCTGCCTGGCAGCCGTGTCCGCTGGACTTA
TCCCTGTGGAGCAGCACGACCAGCATCCCCAGCTGTACCAGGCCCACCAG
CCCCAGCATGTGATCTACCAAAAGCAGCACGAGATCCATCCTCACGGCCA
TGAGGTCTATCCCGATGACCCACATCCCAAGTACAACTTCGCCTACGATG
TGCAGGATGCGCTCTCCGGAGACTCGAAGAGCCAGGTGGAGTCTAGGGAT
GGGGATGTGGTGCAGGGAGAGTACTCTCTGGATGATGCTGATGGCTTCCG
TCGTACTGTAAAATACACCGCCGATTCCGTCAATGGATTTAATGCCGTTG
TGCACCGCGAGCCCCTGGCCCATGTGCACCACAAGGTGGTGGCTGCAGCT
CCTGTTCAGTACCACCACGCTCCTGCCGCCGCCGCTGCCGTCATCAAGAG
CTACGCCTCCCCTTCCCAGGCTTATGTCGCTCCCACCTACGCAGCCCCTG
CCTACACCGCCCCCGCCTACGCCACCCACCAGGCTGAGCAGCCGCAGGAG
CGGGAGCACCAGCAGCACCACTATGCCAGCTACGAGTCCCCTGCCCACGC
CCAGGCCGCCCACGAAGGACATGAGTACTACCACCACCAGTAAGGAGTTT
CCAGCCACAGATCACATGACAAGCGAAAGTATTATTGTGCATCCCATTAT
GAGAACTCATTTAGCTCATTAACCTAGTTCTGTTGATTAGTCGTAACCTG
TTTGTAAATATTCTCAATAAAACTTTCATATATCTATGTAATATGATTTG
TTATGACTTTTCAGGATCTATAATATGCATTATTTTGGGATAATTAGTTT
AAGAAATATATCATTCTTTCCGAAAAGAAACGTAAATTTATAAGATTACA
GTAGTTCTTTTAAAAGAAATTTTGTAAACTATGTTACTTAAAGATTCAAC
TTTTTTTAACAAAAAAAAAAAAAAAA

RE27148.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ac-RA 994 Ccp84Ac-RA 1..994 1..994 4955 99.8 Plus
Cpr5C-RA 643 Cpr5C-RA 273..468 273..468 320 77.5 Plus
Ccp84Ad-RA 862 Ccp84Ad-RA 363..486 273..396 260 80.6 Plus
Ccp84Ad-RA 862 Ccp84Ad-RA 504..558 414..468 155 85.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2520939..2521903 1060..96 4810 99.9 Minus
chr3R 27901430 chr3R 2521962..2522062 101..1 490 99 Minus
chr3R 27901430 chr3R 2518827..2519022 273..468 350 78.6 Plus
chrX 22417052 chrX 5697382..5697577 273..468 320 77.6 Plus
chr3R 27901430 chr3R 2512915..2513110 273..468 290 76.5 Plus
chr3R 27901430 chr3R 2515553..2515748 468..273 275 76 Minus
chr3L 24539361 chr3L 4215344..4215518 280..454 245 76 Plus
chr3R 27901430 chr3R 2528165..2528285 468..348 185 76.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:45:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6695145..6696112 1063..96 4825 99.9 Minus
3R 32079331 3R 6696171..6696271 101..1 490 99 Minus
3R 32079331 3R 6693033..6693228 273..468 350 78.6 Plus
X 23542271 X 5804974..5805169 273..468 320 77.6 Plus
3R 32079331 3R 6687103..6687298 273..468 290 76.5 Plus
3R 32079331 3R 6689759..6689954 468..273 275 76 Minus
3L 28110227 3L 4215958..4216132 280..454 245 76 Plus
3R 32079331 3R 6702374..6702494 468..348 185 76.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6435976..6436943 1063..96 4825 99.8 Minus
3R 31820162 3R 6437002..6437102 101..1 490 99 Minus
X 23527363 X 5813072..5813267 273..468 320 77.5 Plus
3R 31820162 3R 6427934..6428129 273..468 290 76.5 Plus
3R 31820162 3R 6430590..6430785 468..273 275 76 Minus
3R 31820162 3R 6433864..6433987 273..396 260 80.6 Plus
3L 28103327 3L 4215958..4216132 280..454 245 76 Plus
3R 31820162 3R 6434005..6434059 414..468 155 85.4 Plus
Blast to na_te.dros performed on 2019-03-16 05:33:12 has no hits.

RE27148.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:34:11 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2520939..2521897 102..1060 100 <- Minus
chr3R 2521962..2522062 1..101 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:08 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..654 90..743 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:19 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..654 90..743 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:35 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..654 90..743 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:37 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..654 90..743 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:07:26 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..654 90..743 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:01:21 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..743 1..743 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:19 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..1060 1..1060 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:35 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..1060 1..1060 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:38 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..743 1..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:07:26 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
Ccp84Ac-RA 1..1060 1..1060 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:11 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6696171..6696271 1..101 99   Minus
3R 6695148..6696106 102..1060 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:11 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6696171..6696271 1..101 99   Minus
3R 6695148..6696106 102..1060 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:11 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6696171..6696271 1..101 99   Minus
3R 6695148..6696106 102..1060 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:35 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2520870..2521828 102..1060 100 <- Minus
arm_3R 2521893..2521993 1..101 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:34 Download gff for RE27148.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6435979..6436937 102..1060 100 <- Minus
3R 6437002..6437102 1..101 99   Minus

RE27148.hyp Sequence

Translation from 2 to 742

> RE27148.hyp
YSKHALHRRRTQSRFFRSAICQPTSNARQMAFKLVALVSCCLAAVSAGLI
PVEQHDQHPQLYQAHQPQHVIYQKQHEIHPHGHEVYPDDPHPKYNFAYDV
QDALSGDSKSQVESRDGDVVQGEYSLDDADGFRRTVKYTADSVNGFNAVV
HREPLAHVHHKVVAAAPVQYHHAPAAAAAVIKSYASPSQAYVAPTYAAPA
YTAPAYATHQAEQPQEREHQQHHYASYESPAHAQAAHEGHEYYHHQ*

RE27148.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ac-PA 217 CG1327-PA 1..217 30..246 1177 100 Plus
Ccp84Ad-PA 199 CG2341-PA 1..198 30..209 391 49.5 Plus
Cpr5C-PA 145 CG4052-PA 1..145 30..172 365 56.8 Plus
Ccp84Ab-PA 221 CG1252-PA 1..221 30..245 351 43.6 Plus
Ccp84Af-PA 151 CG1331-PA 1..146 30..178 341 51 Plus

RE27148.pep Sequence

Translation from 89 to 742

> RE27148.pep
MAFKLVALVSCCLAAVSAGLIPVEQHDQHPQLYQAHQPQHVIYQKQHEIH
PHGHEVYPDDPHPKYNFAYDVQDALSGDSKSQVESRDGDVVQGEYSLDDA
DGFRRTVKYTADSVNGFNAVVHREPLAHVHHKVVAAAPVQYHHAPAAAAA
VIKSYASPSQAYVAPTYAAPAYTAPAYATHQAEQPQEREHQQHHYASYES
PAHAQAAHEGHEYYHHQ*

RE27148.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17800-PA 223 GF17800-PA 1..223 1..217 794 78.9 Plus
Dana\GF17186-PA 221 GF17186-PA 67..220 60..180 313 51.3 Plus
Dana\GF21210-PA 141 GF21210-PA 59..133 60..138 311 75.9 Plus
Dana\GF17185-PA 207 GF17185-PA 42..108 60..126 299 76.1 Plus
Dana\GF17802-PA 153 GF17802-PA 57..126 60..129 297 78.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10291-PA 215 GG10291-PA 1..215 1..217 1050 95.9 Plus
Dere\GG10313-PA 151 GG10313-PA 1..126 1..129 323 55 Plus
Dere\GG18788-PA 145 GG18788-PA 59..145 60..143 320 75.9 Plus
Dere\GG13621-PA 182 GG13621-PA 1..103 1..126 313 49.2 Plus
Dere\GG13631-PA 199 GG13631-PA 57..123 60..126 308 80.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19486-PA 214 GH19486-PA 1..214 1..216 609 67.9 Plus
Dgri\GH18128-PA 166 GH18128-PA 1..162 1..147 337 48.3 Plus
Dgri\GH19489-PA 147 GH19489-PA 1..139 1..139 331 53.3 Plus
Dgri\GH18129-PA 227 GH18129-PA 1..165 1..171 318 48.3 Plus
Dgri\GH19487-PA 201 GH19487-PA 59..199 39..182 315 55.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ccp84Ac-PA 217 CG1327-PA 1..217 1..217 1177 100 Plus
Ccp84Ad-PA 199 CG2341-PA 1..198 1..180 391 49.5 Plus
Cpr5C-PA 145 CG4052-PA 1..145 1..143 365 56.8 Plus
Ccp84Ab-PA 221 CG1252-PA 1..221 1..216 351 43.6 Plus
Ccp84Af-PA 151 CG1331-PA 1..146 1..149 341 51 Plus
Ccp84Ag-PA 191 CG2342-PA 1..162 1..176 341 45 Plus
Ccp84Aa-PA 205 CG2360-PA 1..198 1..206 336 42.7 Plus
Ccp84Ae-PA 208 CG1330-PA 46..147 60..165 315 62.3 Plus
Cpr92A-PA 245 CG6240-PA 4..245 6..216 302 36.6 Plus
Edg84A-PA 188 CG2345-PA 32..166 60..208 280 46.3 Plus
Cpr62Bc-PB 180 CG1919-PB 1..179 1..216 269 38 Plus
Cpr62Bc-PA 180 CG1919-PA 1..179 1..216 269 38 Plus
Cpr64Aa-PA 192 CG15006-PA 1..172 1..185 268 42 Plus
Cpr64Ab-PA 120 CG15007-PA 37..118 60..139 261 65.9 Plus
Cpr64Ad-PB 247 CG1259-PB 141..244 60..158 260 56.2 Plus
Cpr31A-PA 340 CG33302-PA 133..287 63..195 255 39.4 Plus
Cpr62Bb-PC 194 CG13935-PC 32..189 62..201 248 42.6 Plus
Cpr62Bb-PB 194 CG13935-PB 32..189 62..201 248 42.6 Plus
Cpr62Bb-PA 194 CG13935-PA 32..189 62..201 248 42.6 Plus
Cpr30F-PA 146 CG31876-PA 45..138 65..171 242 52.3 Plus
Cpr35B-PA 218 CG3474-PA 7..138 6..132 236 41.4 Plus
Crys-PB 477 CG16963-PB 65..212 51..192 236 38.7 Plus
Crys-PA 477 CG16963-PA 65..212 51..192 236 38.7 Plus
CG34461-PB 138 CG34461-PB 5..132 9..150 235 43 Plus
CG34461-PA 138 CG34461-PA 5..132 9..150 235 43 Plus
Cpr66Cb-PA 162 CG7076-PA 1..157 1..133 229 39.5 Plus
Cpr76Bb-PA 198 CG9290-PA 68..153 47..134 224 51.1 Plus
Cpr23B-PA 302 CG2973-PA 105..219 21..127 212 43.2 Plus
Cpr76Ba-PA 204 CG9283-PA 1..193 1..157 205 31.6 Plus
Cpr64Ac-PA 188 CG15008-PA 85..178 58..157 190 48.5 Plus
Cpr30B-PA 153 CG3818-PA 26..150 58..181 181 38.5 Plus
Cpr66D-PA 270 CG32029-PA 109..268 22..191 179 31.8 Plus
Cpr76Bd-PD 1228 CG9299-PD 1148..1209 60..121 179 59.7 Plus
Cpr76Bd-PB 1228 CG9299-PB 1148..1209 60..121 179 59.7 Plus
Cpr76Bd-PC 1231 CG9299-PC 1151..1212 60..121 179 59.7 Plus
CG42367-PC 103 CG42367-PC 38..101 64..127 176 56.2 Plus
Cpr76Bc-PD 424 CG9295-PD 46..112 55..121 175 55.2 Plus
Cpr76Bc-PC 424 CG9295-PC 46..112 55..121 175 55.2 Plus
CG13670-PA 266 CG13670-PA 84..168 46..130 153 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23756-PA 215 GI23756-PA 1..156 1..151 558 77.2 Plus
Dmoj\GI23842-PA 176 GI23842-PA 1..162 1..165 349 50.6 Plus
Dmoj\GI23757-PA 176 GI23757-PA 1..162 1..165 339 50 Plus
Dmoj\GI23758-PA 189 GI23758-PA 44..188 60..181 310 49.7 Plus
Dmoj\GI23759-PA 145 GI23759-PA 58..145 60..143 306 70 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22049-PA 231 GL22049-PA 1..191 1..179 637 71.6 Plus
Dper\GL21770-PA 213 GL21770-PA 1..212 1..180 335 47.2 Plus
Dper\GL22052-PA 151 GL22052-PA 1..126 1..129 330 56.6 Plus
Dper\GL21769-PA 198 GL21769-PA 1..103 1..126 327 52.4 Plus
Dper\GL21772-PA 223 GL21772-PA 36..218 60..202 300 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12160-PA 231 GA12160-PA 1..158 1..154 621 77.4 Plus
Dpse\GA27360-PA 151 GA27360-PA 1..126 1..129 330 56.6 Plus
Dpse\GA15354-PA 198 GA15354-PA 1..103 1..126 327 52.4 Plus
Dpse\GA26397-PA 242 GA26397-PA 55..209 60..202 313 51 Plus
Dpse\GA26395-PA 213 GA26395-PA 57..212 60..180 312 54.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10533-PA 217 GM10533-PA 1..217 1..217 1070 96.8 Plus
Dsec\GM10535-PA 151 GM10535-PA 1..126 1..129 322 55 Plus
Dsec\GM12439-PA 145 GM12439-PA 59..145 60..143 319 73.6 Plus
Dsec\GM10910-PA 191 GM10910-PA 1..103 1..126 316 50 Plus
Dsec\GM10911-PA 199 GM10911-PA 57..123 60..126 308 80.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19528-PA 217 GD19528-PA 1..217 1..217 847 96.3 Plus
Dsim\GD19531-PA 151 GD19531-PA 1..126 1..129 322 55 Plus
Dsim\GD16755-PA 145 GD16755-PA 59..145 60..143 320 73.6 Plus
Dsim\GD19890-PA 191 GD19890-PA 1..103 1..126 315 50 Plus
Dsim\GD19530-PA 205 GD19530-PA 46..112 60..126 302 77.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23939-PA 202 GJ23939-PA 1..202 1..216 585 66.8 Plus
Dvir\GJ23942-PA 183 GJ23942-PA 44..182 60..181 337 54 Plus
Dvir\GJ23301-PA 175 GJ23301-PA 61..136 60..139 315 73.8 Plus
Dvir\GJ23943-PA 155 GJ23943-PA 1..127 1..129 311 54.2 Plus
Dvir\GJ23300-PA 175 GJ23300-PA 1..103 1..126 311 50 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10833-PA 220 GK10833-PA 1..220 1..217 576 62.1 Plus
Dwil\GK12249-PA 228 GK12249-PA 1..164 1..171 347 49.2 Plus
Dwil\GK10832-PA 179 GK10832-PA 1..156 1..171 340 48 Plus
Dwil\GK12247-PA 194 GK12247-PA 1..103 1..126 326 51.6 Plus
Dwil\GK10834-PA 219 GK10834-PA 66..132 60..126 309 82.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25836-PA 219 GE25836-PA 1..219 1..217 930 92.7 Plus
Dyak\GE25838-PA 151 GE25838-PA 1..126 1..129 319 53.5 Plus
Dyak\GE25837-PA 202 GE25837-PA 46..132 60..150 317 68.1 Plus
Dyak\GE16433-PA 154 GE16433-PA 65..131 60..126 311 83.6 Plus
Dyak\GE24879-PA 191 GE24879-PA 1..103 1..126 311 48.4 Plus