Clone RE27292 Report

Search the DGRC for RE27292

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:272
Well:92
Vector:pFlc-1
Associated Gene/TranscriptAtg7-RA
Protein status:RE27292.pep: gold
Preliminary Size:2099
Sequenced Size:2419

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5489 2002-01-01 Sim4 clustering to Release 2
CG5489 2002-02-22 Blastp of sequenced clone
CG5489 2003-01-01 Sim4 clustering to Release 3
Atg7 2008-04-29 Release 5.5 accounting
Atg7 2008-08-15 Release 5.9 accounting
Atg7 2008-12-18 5.12 accounting

Clone Sequence Records

RE27292.complete Sequence

2419 bp (2419 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084144

> RE27292.complete
GTCTTCTCATTGGTCTATCGCCATCGAGAGCTTTGTTTGTTTATAATTTG
CAGCCAAACGTTTGAACGTAAACAACGCCCTAAGCAAAACATGAGCACGG
AAAAAGAGATAATTTTGCAATTTGCTCCGTGGGAATCTTTTGTGTCGCCC
ACTTTCTGGCACAAGCTAGCGGAGCTTAAGCTCGACCACGATCGCCTGTC
CGACTCGAAACGCTCCATTACTGGACACTACACAAATCGTAATGCAAGTG
GATGCCTTTTGGAAGTAGACTACACGGCCTACAACAGAATGGCAAAGCCT
CCAAAATTCAGCCATTCCGCTATAGGCACCATCTACAATAAGAACACAAT
CGAAGAGTTCAAGGCCCTGGACAAATTACAACTGCTGGCCGATGAGGGCA
AGGAACTGCTGGCTGATATGTGCAGTGGTGGCGCCTTGAGAGATCCCAGT
CTATTGACCCGGTTCTTTGTTCTCTCCTTTGCCGATTTAAAGTGTCACAG
CTACTACTATTGGTTCGCCTTTCCGTGCCCGCTGACGCCCACCTTAAAGC
TTCAGGGAGCCGTCCAAAAACTGCGGGACTTGCCCAATAGTAGTAGCTAT
ATAATGGCTCTAAAGGCCTTACCCACTGAGTCACAGAACTTCTTCATTCT
GTATGCTAATGTGGAGAAGAACATTTTCGAAGCCCGTAGTTTAAGTTCCC
TTGACGATAAAAATGTTGAGTTCTGTTATTTTGGTTTTGCTGATCCCAGC
GAGTATGAGCATCCAGCTTGGATAATGCGAAACTATGCTGCCTTTCTGCT
TCAGCAATGTCCCTCTTTTGTTGGAAAACCATTGAAGTTTCTTGGCCTGC
GACACAATCAACAAATGAACATCGATGACAGCCTTGTATGGAAGGTGATT
CAGACTGAAGCTTGCGATCTTAGCCAAAGCGAAAATATAAAGTTCGTGGG
CTGGGAGCTAAATAAAAATGGCAAAATGGGGCCAAGAATGGTGTGCATGA
GGGACAGCATGGATCCAGCCAAACTCGCTGAGAACTCTGTAAACCTGAAC
CTGAAACTAATGAAGTGGCGCCTTGTTCCCGATCTCAATCTCGAAATCAT
CTCCCAAACAAAATGCCTGCTCTTTGGAGCTGGTACTTTAGGATGCGCTG
TAGCTAGAAATCTGCTGTCCTGGGGATTTAAGCACATAACCCTTTTGGAC
AGCGGCAAGGTTGGGTTCTCTAATCCAGTGCGTCAGAATCTCTACACGCA
TGCAGATGCTGTGGCAGGCAATCGGATGAAGGCGACTACAGCTGCTCAGA
GATTGAAAGAGATCAATCCGTCTGCGGAAACGGCGGGTTATGTGCTGGAG
ATTCCCATGCCTGGGCATACTATTGGAGAATCGCTTCTAGCCCAGACGAA
GGAGCATTTGAAGGTTATCGAAAAGCTTGTGCAGGACCATGATGTCATCT
TTCTGCTCACAGATTCGCGCGAAAGCCGCTGGCTGCCCACCCTGCTTGGA
GCGGCAAAGGAAAAAATTGTCATCAACGCAGCTTTAGGCTTTGACAGTTA
TCTGGTAATGCGACATGGCACTACGCGTAAGGAAGCAGGCGACGATGGCC
AAGAAATCGAAGGACTTAAGTGCATTAATGGCGATCAATTAGGTTGCTAC
TTTTGTAACGATGTTACGGCCCCTGGAAATTCGCTCAAAGACCGAACTTT
GGATCAACAGTGCACAGTGACACGACCCGGAGTATCCAACATTGCGGCCA
GCTATGCGGTGGAATTGTTGGTGGCTTTGCTGCAGCATCCTCGTAAGGAG
CTGGCACCCGCCTACTATGCACAGAGTGGGCGTGGCAGGTCGGAGGAGAC
GGAAGAAAAGGTGCCGGAGGGTCTGCTAGGAATTTTGCCTCACTCCATCC
GTGGAATGCTGTGCAACTACGAGAATATTCTGCCCGCCACTCAAAAGTTT
GCTCAGTGCATAGCCTGTTCAGCGGCCGTCCTAAATGAATATAAAAAAGA
GGGTCATGCTTTCCTGTTTAAAACTTTTGAAACAGCCAAGTTTCTGGAGG
ATTTGACGGGAATCTCCGAATTCAAGCGGTTAAACAGCGAGATTATCGAT
TTTGATGATGAAGAATTTGACATGTCCGATAGCGACGAGGATTAGGTTCC
ACAAAATTGGTCAAGTTTTATCTTCAAAGCAAAATATCTTAAATATGAAA
TTCAGCTTATTGTGGCTTTAATTTTCTGCAGCATTTATAGTTCAATGTCT
ATACCAAAAATGTGTGTACTTCAATGCTTTTATTCTATCTAGTCGTTAAG
CAAATTGTGAATCATTCAAATGAAATTGATGTGAAAATTAGGCATAAGAA
AAATGTGAATTTACTATTGAAAATTGTAATAATAAAAGTGTGAATTTACT
AAAGAAAAAAAAAAAAAAA

RE27292.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-RA 2515 Atg7-RA 63..2469 2..2408 12005 99.9 Plus
Atg7-RB 1972 Atg7-RB 327..1926 809..2408 7970 99.8 Plus
Atg7-RB 1972 Atg7-RB 42..327 2..287 1430 100 Plus
Atg7-RA 2515 Atg7-RA 2440..2486 2344..2390 190 93.6 Plus
Atg7-RB 1972 Atg7-RB 1897..1943 2344..2390 190 93.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14511309..14511833 809..285 2460 97.9 Minus
chr2R 21145070 chr2R 14510354..14510702 1515..1167 1715 99.4 Minus
chr2R 21145070 chr2R 14507589..14507900 2401..2090 1560 100 Minus
chr2R 21145070 chr2R 14508162..14508456 1975..1681 1445 99.3 Minus
chr2R 21145070 chr2R 14511887..14512168 287..2 1320 98.3 Minus
chr2R 21145070 chr2R 14511039..14511252 1022..809 1055 99.5 Minus
chr2R 21145070 chr2R 14510129..14510293 1680..1516 810 99.4 Minus
chr2R 21145070 chr2R 14510763..14510907 1167..1023 725 100 Minus
chr2R 21145070 chr2R 14507963..14508080 2091..1974 590 100 Minus
chr2R 21145070 chr2R 14507565..14507611 2390..2344 190 93.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18624185..18624709 809..285 2625 100 Minus
2R 25286936 2R 18623230..18623578 1515..1167 1745 100 Minus
2R 25286936 2R 18620458..18620776 2408..2090 1565 99.4 Minus
2R 25286936 2R 18621038..18621332 1975..1681 1475 100 Minus
2R 25286936 2R 18624763..18625048 287..2 1430 100 Minus
2R 25286936 2R 18623915..18624128 1022..809 1070 100 Minus
2R 25286936 2R 18623005..18623169 1680..1516 825 100 Minus
2R 25286936 2R 18623639..18623783 1167..1023 725 100 Minus
2R 25286936 2R 18620839..18620956 2091..1974 590 100 Minus
2R 25286936 2R 18620441..18620487 2390..2344 190 93.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18625384..18625908 809..285 2625 100 Minus
2R 25260384 2R 18624429..18624777 1515..1167 1745 100 Minus
2R 25260384 2R 18621657..18621975 2408..2090 1565 99.3 Minus
2R 25260384 2R 18622237..18622531 1975..1681 1475 100 Minus
2R 25260384 2R 18625962..18626247 287..2 1430 100 Minus
2R 25260384 2R 18625114..18625327 1022..809 1070 100 Minus
2R 25260384 2R 18624204..18624368 1680..1516 825 100 Minus
2R 25260384 2R 18624838..18624982 1167..1023 725 100 Minus
2R 25260384 2R 18622038..18622155 2091..1974 590 100 Minus
2R 25260384 2R 18621640..18621686 2390..2344 190 93.6 Minus
Blast to na_te.dros performed 2019-03-15 14:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 3581..3647 2336..2271 143 70.1 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 3285..3348 2333..2271 137 70.3 Minus
Stalker 7256 Stalker STALKER 7256bp 3179..3242 2333..2271 137 70.3 Minus

RE27292.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:09:00 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14507586..14507898 2092..2404 99 <- Minus
chr2R 14507963..14508079 1975..2091 100 <- Minus
chr2R 14508163..14508456 1681..1974 99 <- Minus
chr2R 14510129..14510293 1516..1680 99 <- Minus
chr2R 14510354..14510701 1168..1515 99 <- Minus
chr2R 14510763..14510907 1023..1167 100 <- Minus
chr2R 14511039..14511251 810..1022 99 <- Minus
chr2R 14511309..14511830 288..809 97 <- Minus
chr2R 14511887..14512168 1..287 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:16 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2055 91..2145 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:43 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2055 91..2145 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:20:24 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2055 91..2145 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:59 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2055 91..2145 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:51:50 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2055 91..2145 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:03:49 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2403 2..2404 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:43 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2403 2..2404 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:20:24 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2395 6..2400 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:59 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2403 2..2404 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:51:50 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
Atg7-RA 1..2395 6..2400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:09:00 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18623915..18624127 810..1022 100 <- Minus
2R 18620462..18620774 2092..2404 99 <- Minus
2R 18620839..18620955 1975..2091 100 <- Minus
2R 18621039..18621332 1681..1974 100 <- Minus
2R 18623005..18623169 1516..1680 100 <- Minus
2R 18623230..18623577 1168..1515 100 <- Minus
2R 18623639..18623783 1023..1167 100 <- Minus
2R 18624185..18624706 288..809 100 <- Minus
2R 18624763..18625048 1..287 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:09:00 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18623915..18624127 810..1022 100 <- Minus
2R 18620462..18620774 2092..2404 99 <- Minus
2R 18620839..18620955 1975..2091 100 <- Minus
2R 18621039..18621332 1681..1974 100 <- Minus
2R 18623005..18623169 1516..1680 100 <- Minus
2R 18623230..18623577 1168..1515 100 <- Minus
2R 18623639..18623783 1023..1167 100 <- Minus
2R 18624185..18624706 288..809 100 <- Minus
2R 18624763..18625048 1..287 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:09:00 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18623915..18624127 810..1022 100 <- Minus
2R 18620462..18620774 2092..2404 99 <- Minus
2R 18620839..18620955 1975..2091 100 <- Minus
2R 18621039..18621332 1681..1974 100 <- Minus
2R 18623005..18623169 1516..1680 100 <- Minus
2R 18623230..18623577 1168..1515 100 <- Minus
2R 18623639..18623783 1023..1167 100 <- Minus
2R 18624185..18624706 288..809 100 <- Minus
2R 18624763..18625048 1..287 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:20:24 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14510735..14511082 1168..1515 100 <- Minus
arm_2R 14511144..14511288 1023..1167 100 <- Minus
arm_2R 14507967..14508279 2092..2404 99 <- Minus
arm_2R 14508344..14508460 1975..2091 100 <- Minus
arm_2R 14508544..14508837 1681..1974 100 <- Minus
arm_2R 14510510..14510674 1516..1680 100 <- Minus
arm_2R 14511420..14511632 810..1022 100 <- Minus
arm_2R 14511690..14512211 288..809 100 <- Minus
arm_2R 14512268..14512553 1..287 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:09 Download gff for RE27292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18624838..18624982 1023..1167 100 <- Minus
2R 18624429..18624776 1168..1515 100 <- Minus
2R 18621661..18621973 2092..2404 99 <- Minus
2R 18622038..18622154 1975..2091 100 <- Minus
2R 18622238..18622531 1681..1974 100 <- Minus
2R 18624204..18624368 1516..1680 100 <- Minus
2R 18625114..18625326 810..1022 100 <- Minus
2R 18625384..18625905 288..809 100 <- Minus
2R 18625962..18626247 1..287 99   Minus

RE27292.hyp Sequence

Translation from 3 to 2144

> RE27292.hyp
FSLVYRHRELCLFIICSQTFERKQRPKQNMSTEKEIILQFAPWESFVSPT
FWHKLAELKLDHDRLSDSKRSITGHYTNRNASGCLLEVDYTAYNRMAKPP
KFSHSAIGTIYNKNTIEEFKALDKLQLLADEGKELLADMCSGGALRDPSL
LTRFFVLSFADLKCHSYYYWFAFPCPLTPTLKLQGAVQKLRDLPNSSSYI
MALKALPTESQNFFILYANVEKNIFEARSLSSLDDKNVEFCYFGFADPSE
YEHPAWIMRNYAAFLLQQCPSFVGKPLKFLGLRHNQQMNIDDSLVWKVIQ
TEACDLSQSENIKFVGWELNKNGKMGPRMVCMRDSMDPAKLAENSVNLNL
KLMKWRLVPDLNLEIISQTKCLLFGAGTLGCAVARNLLSWGFKHITLLDS
GKVGFSNPVRQNLYTHADAVAGNRMKATTAAQRLKEINPSAETAGYVLEI
PMPGHTIGESLLAQTKEHLKVIEKLVQDHDVIFLLTDSRESRWLPTLLGA
AKEKIVINAALGFDSYLVMRHGTTRKEAGDDGQEIEGLKCINGDQLGCYF
CNDVTAPGNSLKDRTLDQQCTVTRPGVSNIAASYAVELLVALLQHPRKEL
APAYYAQSGRGRSEETEEKVPEGLLGILPHSIRGMLCNYENILPATQKFA
QCIACSAAVLNEYKKEGHAFLFKTFETAKFLEDLTGISEFKRLNSEIIDF
DDEEFDMSDSDED*

RE27292.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-PA 684 CG5489-PA 1..684 30..713 3588 100 Plus
Atg7-PB 510 CG5489-PB 67..510 270..713 2313 100 Plus
Atg7-PB 510 CG5489-PB 1..76 30..102 355 90.8 Plus

RE27292.pep Sequence

Translation from 90 to 2144

> RE27292.pep
MSTEKEIILQFAPWESFVSPTFWHKLAELKLDHDRLSDSKRSITGHYTNR
NASGCLLEVDYTAYNRMAKPPKFSHSAIGTIYNKNTIEEFKALDKLQLLA
DEGKELLADMCSGGALRDPSLLTRFFVLSFADLKCHSYYYWFAFPCPLTP
TLKLQGAVQKLRDLPNSSSYIMALKALPTESQNFFILYANVEKNIFEARS
LSSLDDKNVEFCYFGFADPSEYEHPAWIMRNYAAFLLQQCPSFVGKPLKF
LGLRHNQQMNIDDSLVWKVIQTEACDLSQSENIKFVGWELNKNGKMGPRM
VCMRDSMDPAKLAENSVNLNLKLMKWRLVPDLNLEIISQTKCLLFGAGTL
GCAVARNLLSWGFKHITLLDSGKVGFSNPVRQNLYTHADAVAGNRMKATT
AAQRLKEINPSAETAGYVLEIPMPGHTIGESLLAQTKEHLKVIEKLVQDH
DVIFLLTDSRESRWLPTLLGAAKEKIVINAALGFDSYLVMRHGTTRKEAG
DDGQEIEGLKCINGDQLGCYFCNDVTAPGNSLKDRTLDQQCTVTRPGVSN
IAASYAVELLVALLQHPRKELAPAYYAQSGRGRSEETEEKVPEGLLGILP
HSIRGMLCNYENILPATQKFAQCIACSAAVLNEYKKEGHAFLFKTFETAK
FLEDLTGISEFKRLNSEIIDFDDEEFDMSDSDED*

RE27292.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12940-PA 682 GF12940-PA 1..682 1..684 3085 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20962-PA 684 GG20962-PA 1..684 1..684 3490 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21606-PA 683 GH21606-PA 6..683 8..684 2794 75.1 Plus
Dgri\GH25062-PA 158 GH25062-PA 6..158 530..684 667 78.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Atg7-PA 684 CG5489-PA 1..684 1..684 3588 100 Plus
Atg7-PB 510 CG5489-PB 67..510 241..684 2313 100 Plus
Atg7-PB 510 CG5489-PB 1..76 1..73 355 90.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19577-PA 683 GI19577-PA 6..675 8..679 2757 75.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17443-PA 681 GL17443-PA 3..681 6..684 3159 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30501-PA 685 GA30501-PA 3..685 6..684 3130 83.7 Plus
Dpse\GA30501-PB 507 GA30501-PB 57..507 231..684 2114 85.5 Plus
Dpse\GA30501-PB 507 GA30501-PB 3..80 6..84 297 68.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19894-PA 684 GM19894-PA 1..684 1..684 3565 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25379-PA 684 GD25379-PA 1..684 1..684 3573 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21152-PA 681 GJ21152-PA 1..681 1..683 2859 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21355-PA 672 GK21355-PA 3..672 6..683 2731 75 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13902-PA 684 GE13902-PA 1..684 1..684 3511 94.6 Plus