Clone RE27327 Report

Search the DGRC for RE27327

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:273
Well:27
Vector:pFlc-1
Associated Gene/Transcriptolf186-M-RA
Protein status:RE27327.pep: gold
Preliminary Size:1744
Sequenced Size:1760

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14489 2002-10-01 Blastp of sequenced clone
CG14489 2003-01-01 Sim4 clustering to Release 3
olf186-M 2008-04-29 Release 5.5 accounting
olf186-M 2008-08-15 Release 5.9 accounting
olf186-M 2008-12-18 5.12 accounting

Clone Sequence Records

RE27327.complete Sequence

1760 bp (1760 high quality bases) assembled on 2002-10-01

GenBank Submission: BT001592

> RE27327.complete
AGTTTTGAAGATCACTCGTTGCGAAGCGGACGCTTAGCACAGCGGCAAGT
GAAAGCTGGAAGATATAGTTGGCAAAAATAACAAATCGATCTTCACTTCC
GAACTTTTTTAACACTTGTGTGTACTTAAATGTGAACAAATATTGAACCA
GATCCAACAAAGGTGGTTGGTTCACCACAAAACAAAGTAGCCCAATATCA
ATGTCATGCGATCGTGAAAACACTCGATCGTTCCAAATCCGGGGTCAGAA
GCTCTACGGCTGATTAACACACTCCGCATCTACGCGCTGCGAGCGAAATA
AATGAAAATAAACAAAAAAACAAACAGACAAACACACAAATACGGCAAAT
GCGAACAGCAACAACAAATTAACAGAAACTCGCGGAATATAGAAAAACAC
GTTTCCACAAAAAGGCGATCGGAGCGAAAAAAAAACAAAAAGCAAAAAAA
CAATTTAGCTAAATAACAACAAATAACACAAATTGTCATCGCTTTTGTTA
TTTCGAATACGATACTTGCGCACACGCATTTGAAATTAAAGGCCCTGATT
CTGGCCATTACCAAATATGTCCAAAAGCCGAGCTTGAATCGAGATCGCGG
CGAGTCGAGCAGCAGCTAGCTTGTAACCCGAGCAGCCGTGACCACAGAAA
ACTCATTGCAGATACTAGATATCCGCACAGTAGATATACATACATACATA
TATAACCCACTATCCATATATACCGTACGCCATGGAACGTTCGCACAGCT
GTAGCAATTTCGAGGGCAGGACGGGAGCCAAGGTCATCGTTGGCGCAGTG
GAGCAATTGGCCGGCAGCAGTGAGCACCTGCCCAGCGTCCACTTTCCGCC
CAGCAAGCCGCTGCGCAGGCGCAGAAAATTGCAGCGACAGCAGAGTGCCG
TCGATACGGATGACATGGAATATGCCGCCGATCTGGAGGAGAATGCCGAT
CCGGATGCACATGAGCATATGTCGCCCGTCGTCACCATGCCCATGCGCCA
TATATCTGCCACCAGTACGCGTTGCCTGCGCCACGAGGAGTCCTTTGAGT
CATCCAGCACGGCGCCCGAACTGAGTCCGCAGGCGCAGAGGCAACAGCGC
TTCAGTAGTCTGCTCCTGCGTGACAGCTCCGTATCCGTGCAGTCGGACTC
GAGTCGATATTCCAGCGTGGACAGCTTGCTGGAGGCACGCAAGCCAGATC
CCGAGGCCATACTCATCAACCTGGGCTTTGGACCGCTCAGCTCCGAGGAT
ATGCTGTCGCGGATACCGCGGAGGTTTCTGAAGCCCTCGCAAGTGCCTGG
CATCGATACGGATGCCTTTGTGCAAAGACTGACTCTGGCGCGATCCCTGG
CCGATTCGAGTGTTCTGGGCTATAGGGGTCTAACCGGAAATCCGGACATG
CCGCCCTCCTCAATTGTGGCCAGCATTATGAAGCGATTCGAGGTCAATCA
TCATAGGAAAAACTCCATGGGCTCCATTAAGCCCAGCATACAATAGAGCC
CTTTGAATTCTTAGCCATACAACATAAGATAGTCAGCCAAATAGAGGACT
TTCGCTTACGTTAATTGTTGCCAAGCGGGGTTATGGGTGACCTTTGACCT
GTGACCCATGTGATCATCTTGTCTTGTCCATTAGTCATTACAAGTGCCGC
GTACTTAGCTGTTTAACTGTACTATTGTATTATTATCAACTATTGTGAAC
TTGTTTTAAGCATGTATTAAAGATGATATTTTATGAGACATTTTAAAAAA
AAAAAAAAAA

RE27327.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-M-RA 1744 olf186-M-RA 1..1744 1..1744 8720 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13733874..13735622 1..1744 8410 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17846701..17848446 1..1746 8730 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17847900..17849645 1..1746 8730 100 Plus
Blast to na_te.dros performed 2019-03-16 01:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 5893..6017 357..482 149 60.6 Plus

RE27327.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:49:03 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13733874..13735622 1..1744 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:18 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..765 732..1496 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:58 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..765 732..1496 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:28 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..765 732..1496 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:04 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..765 732..1496 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:41:45 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..765 732..1496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:35:26 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:58 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:28 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 3..1746 1..1744 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:04 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 1..1744 1..1744 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:41:45 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
olf186-M-RA 3..1746 1..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:03 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17846701..17848444 1..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:03 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17846701..17848444 1..1744 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:49:03 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17846701..17848444 1..1744 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:28 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13734206..13735949 1..1744 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:42 Download gff for RE27327.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17847900..17849643 1..1744 100   Plus

RE27327.pep Sequence

Translation from 731 to 1495

> RE27327.pep
MERSHSCSNFEGRTGAKVIVGAVEQLAGSSEHLPSVHFPPSKPLRRRRKL
QRQQSAVDTDDMEYAADLEENADPDAHEHMSPVVTMPMRHISATSTRCLR
HEESFESSSTAPELSPQAQRQQRFSSLLLRDSSVSVQSDSSRYSSVDSLL
EARKPDPEAILINLGFGPLSSEDMLSRIPRRFLKPSQVPGIDTDAFVQRL
TLARSLADSSVLGYRGLTGNPDMPPSSIVASIMKRFEVNHHRKNSMGSIK
PSIQ*

RE27327.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11680-PA 263 GF11680-PA 1..263 1..254 976 84.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21830-PA 253 GG21830-PA 1..253 1..254 1120 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22030-PA 262 GH22030-PA 1..262 1..254 744 64.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-M-PA 254 CG14489-PA 1..254 1..254 1285 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19119-PA 281 GI19119-PA 1..281 1..254 781 64.2 Plus
Dmoj\GI14586-PA 89 GI14586-PA 1..89 166..254 346 73 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17228-PA 310 GL17228-PA 1..305 1..249 867 65.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13023-PD 256 GA13023-PD 1..251 1..249 895 74.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21829-PA 249 GM21829-PA 1..249 1..254 1104 93.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11323-PA 190 GD11323-PA 18..190 82..254 797 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22250-PA 282 GJ22250-PA 1..282 1..254 816 65.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22233-PA 309 GK22233-PA 1..309 1..254 735 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11906-PA 254 GE11906-PA 1..254 1..254 1104 93.7 Plus

RE27327.hyp Sequence

Translation from 731 to 1495

> RE27327.hyp
MERSHSCSNFEGRTGAKVIVGAVEQLAGSSEHLPSVHFPPSKPLRRRRKL
QRQQSAVDTDDMEYAADLEENADPDAHEHMSPVVTMPMRHISATSTRCLR
HEESFESSSTAPELSPQAQRQQRFSSLLLRDSSVSVQSDSSRYSSVDSLL
EARKPDPEAILINLGFGPLSSEDMLSRIPRRFLKPSQVPGIDTDAFVQRL
TLARSLADSSVLGYRGLTGNPDMPPSSIVASIMKRFEVNHHRKNSMGSIK
PSIQ*

RE27327.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
olf186-M-PA 254 CG14489-PA 1..254 1..254 1285 100 Plus