BDGP Sequence Production Resources |
Search the DGRC for RE27477
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 274 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13295-RA |
Protein status: | RE27477.pep: gold |
Preliminary Size: | 1458 |
Sequenced Size: | 1650 |
Gene | Date | Evidence |
---|---|---|
CG13295 | 2001-12-14 | Blastp of sequenced clone |
CG13295 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13295 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13295 | 2008-04-29 | Release 5.5 accounting |
CG13295 | 2008-08-15 | Release 5.9 accounting |
CG13295 | 2008-12-18 | 5.12 accounting |
1650 bp (1650 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071237
> RE27477.complete AGTTTTACCTCATAATTCAAGATCAGGAGTTATATATCCAAAATCTTAAT CTCGCGGCAGTGCTCCCGTATGTTGGCCATCTGTGACGCGGTGCAGTGTT GTGCTGCCGCCCACTGCTTACATAATGTCCATGTCGTTGGGCTCCAAGAT CCGGAAATTGGTCACCAGCAGACGGCACTTCCTGCTTTTGCGCCGATCGC TGAACCAAGATCTGACAACGGCGCTGAGACCCTTCTACTTCGCGGTGCAT CCTGACTTCTTTGCCCAGCATCCGGAGCAGAGGAACACCAACGAGAACTC ACTGAAATTGCTGAGTGAGCATCTAGAGGCTTTGTATGAACGCAGACAGC GAAGCGGGGACACCCAAGTGCTCAAGTTCTATGTACGCACCAGTTCAGAT GCTGACAAGCGAGACTCCTTCAAGCTCATCCAAATACGCACGGACTGGCA GAGTACCCGAGATCCCAAAACCTTTATTCAAGGTCTTCTGGAGTCATGCA ACTTGTCCACGGAGTATGTGAAGAACATTAAGGCCCAGCCTGAGCCGCCA AAAACCTCTGGCTTGGATTTTAAACCAAGCCATGACTATCACTATGACAT GGAGTTCGCCGAGTTTGAAACTCAGTTGAAGAATGAACGTGCCAGTAAGC GTCCAGTGCTGACCACCTGGCTGGAAGAGAATGCTGGCACAGCCAAACAG CGCTCTAAGGAAACTGCGGATCTGCAGGCCGAAATCGACAAACTGAAAAA AATGCTGGTAGAGAAACTGGAGTTGCAAGATGCTCGTTACGAGTGCGGCT GGAACATTGAGCACTACCGTGGCTGTTTAAAGACCCTTGAGCGACTATCC AACACCCATTTGTTGGAAATGGCTTCCCTGAAAGGTCGCATAGTGGTTTT TGCTCCCTTTACGGGCATCAGTTTAGAAGGCCATGTGATGCTTTTTACTG GTGATGTTCTCAGCACATGGATTGACTTCATCAAGAACATTCCGCACCAC GATGCCTATTTAAAGGTGGTGCCCGTGTATGAACGAACACTGTCTCAGGT TCTACTGAACATCCAGATAGGTCGTCGCAAGTTTATGCCCAAACAACAGG CAAGTGGCTATGCAAGCTACCTCATGAAGGTCACCACTTCGCTCAGCGAT TACCTGGGCAAACAAAAATATCCGCCGGAATGGCCGAAAACGCTGAAAGA GTTTACCATAGTGGTGGAATCAGAGGCAGGTCCTCTGATGGTAAGCCCTA CGGGCCAGTTTATCACACCAGCCACCTGTCCGGGATCCATACTCGTAGAC TTCATCAGTGTAAATCTGGAGCTGGCCAGGGAGCGTATGAAGAAGTACGC TCAGGACAAGCACATCGAGCAGGAGCTGATGGACTCGTGCATAAAGCAGC TACAGTTGCAATCGCTGACCAAAGATGATGCCATAACCCCGGATAAAATG ATAACATCCCTTAGAGATTTATACCAGCTTCAGTTGAAAGAACTGCAGGG ATGCAAGCTTCACATAACCCACTACTATTCGGTACTGACCGACGGCGTTG TGTGCATACCCTGGGATTTTCTGCAGAGGTAGTTGGATTTTCTCATGTGC CTTATTAGTCAAAATAAACATAGTAATAATTTATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13295-RA | 1749 | CG13295-RA | 110..1742 | 3..1635 | 8165 | 100 | Plus |
CG13295.b | 1862 | CG13295.b | 110..1685 | 3..1578 | 7880 | 100 | Plus |
CG13295.a | 1575 | CG13295.a | 334..1575 | 394..1635 | 6210 | 100 | Plus |
CG13295.a | 1575 | CG13295.a | 3..333 | 3..333 | 1655 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 6066145..6067144 | 1634..635 | 5000 | 100 | Minus |
chr3L | 24539361 | chr3L | 6067202..6067629 | 635..208 | 2140 | 100 | Minus |
chr3L | 24539361 | chr3L | 6067688..6067894 | 209..3 | 1035 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 6073489..6074489 | 1635..635 | 5005 | 100 | Minus |
3L | 28110227 | 3L | 6074547..6074974 | 635..208 | 2140 | 100 | Minus |
3L | 28110227 | 3L | 6075033..6075239 | 209..3 | 1035 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 6066589..6067589 | 1635..635 | 5005 | 100 | Minus |
3L | 28103327 | 3L | 6067647..6068074 | 635..208 | 2140 | 100 | Minus |
3L | 28103327 | 3L | 6068133..6068339 | 209..3 | 1035 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 6066145..6067144 | 635..1634 | 100 | <- | Minus |
chr3L | 6067203..6067627 | 210..634 | 100 | <- | Minus |
chr3L | 6067688..6067895 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 1..1458 | 125..1582 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 1..1458 | 125..1582 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 1..1458 | 125..1582 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 1..1458 | 125..1582 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 1..1458 | 125..1582 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 2..1633 | 3..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 2..1633 | 3..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 5..1638 | 1..1634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 2..1633 | 3..1634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13295-RA | 5..1638 | 1..1634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6074548..6074972 | 210..634 | 100 | <- | Minus |
3L | 6073490..6074489 | 635..1634 | 100 | <- | Minus |
3L | 6075033..6075240 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6074548..6074972 | 210..634 | 100 | <- | Minus |
3L | 6073490..6074489 | 635..1634 | 100 | <- | Minus |
3L | 6075033..6075240 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6074548..6074972 | 210..634 | 100 | <- | Minus |
3L | 6073490..6074489 | 635..1634 | 100 | <- | Minus |
3L | 6075033..6075240 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 6066590..6067589 | 635..1634 | 100 | <- | Minus |
arm_3L | 6067648..6068072 | 210..634 | 100 | <- | Minus |
arm_3L | 6068133..6068340 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 6066590..6067589 | 635..1634 | 100 | <- | Minus |
3L | 6067648..6068072 | 210..634 | 100 | <- | Minus |
3L | 6068133..6068340 | 1..209 | 99 | Minus |
Translation from 124 to 1581
> RE27477.hyp MSMSLGSKIRKLVTSRRHFLLLRRSLNQDLTTALRPFYFAVHPDFFAQHP EQRNTNENSLKLLSEHLEALYERRQRSGDTQVLKFYVRTSSDADKRDSFK LIQIRTDWQSTRDPKTFIQGLLESCNLSTEYVKNIKAQPEPPKTSGLDFK PSHDYHYDMEFAEFETQLKNERASKRPVLTTWLEENAGTAKQRSKETADL QAEIDKLKKMLVEKLELQDARYECGWNIEHYRGCLKTLERLSNTHLLEMA SLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDAYLKVVP VYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGKQKYP PEWPKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLEL ARERMKKYAQDKHIEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLY QLQLKELQGCKLHITHYYSVLTDGVVCIPWDFLQR*
Translation from 124 to 1581
> RE27477.pep MSMSLGSKIRKLVTSRRHFLLLRRSLNQDLTTALRPFYFAVHPDFFAQHP EQRNTNENSLKLLSEHLEALYERRQRSGDTQVLKFYVRTSSDADKRDSFK LIQIRTDWQSTRDPKTFIQGLLESCNLSTEYVKNIKAQPEPPKTSGLDFK PSHDYHYDMEFAEFETQLKNERASKRPVLTTWLEENAGTAKQRSKETADL QAEIDKLKKMLVEKLELQDARYECGWNIEHYRGCLKTLERLSNTHLLEMA SLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDAYLKVVP VYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGKQKYP PEWPKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLEL ARERMKKYAQDKHIEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLY QLQLKELQGCKLHITHYYSVLTDGVVCIPWDFLQR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10929-PA | 487 | GF10929-PA | 1..484 | 1..482 | 2141 | 80.6 | Plus |
Dana\GF22210-PA | 460 | GF22210-PA | 18..453 | 23..482 | 820 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14090-PA | 485 | GG14090-PA | 1..485 | 1..485 | 2566 | 97.9 | Plus |
Dere\GG12929-PA | 493 | GG12929-PA | 5..491 | 11..485 | 793 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16445-PA | 482 | GH16445-PA | 1..482 | 5..485 | 1806 | 69.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13295-PA | 485 | CG13295-PA | 1..485 | 1..485 | 2524 | 100 | Plus |
CG2854-PA | 491 | CG2854-PA | 5..489 | 11..485 | 763 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16700-PA | 493 | GI16700-PA | 30..493 | 21..485 | 1824 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15525-PA | 496 | GL15525-PA | 7..496 | 1..485 | 2125 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12178-PA | 496 | GA12178-PA | 7..496 | 1..485 | 2116 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13873-PA | 485 | GM13873-PA | 1..485 | 1..485 | 2546 | 97.5 | Plus |
Dsec\GM19221-PA | 491 | GM19221-PA | 5..489 | 11..485 | 787 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13157-PA | 486 | GD13157-PA | 1..485 | 1..485 | 2549 | 98.1 | Plus |
Dsim\GD16606-PA | 455 | GD16606-PA | 5..453 | 11..485 | 662 | 34.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12436-PA | 489 | GJ12436-PA | 26..489 | 21..485 | 1845 | 71.8 | Plus |