Clone RE27477 Report

Search the DGRC for RE27477

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:274
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG13295-RA
Protein status:RE27477.pep: gold
Preliminary Size:1458
Sequenced Size:1650

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13295 2001-12-14 Blastp of sequenced clone
CG13295 2002-01-01 Sim4 clustering to Release 2
CG13295 2003-01-01 Sim4 clustering to Release 3
CG13295 2008-04-29 Release 5.5 accounting
CG13295 2008-08-15 Release 5.9 accounting
CG13295 2008-12-18 5.12 accounting

Clone Sequence Records

RE27477.complete Sequence

1650 bp (1650 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071237

> RE27477.complete
AGTTTTACCTCATAATTCAAGATCAGGAGTTATATATCCAAAATCTTAAT
CTCGCGGCAGTGCTCCCGTATGTTGGCCATCTGTGACGCGGTGCAGTGTT
GTGCTGCCGCCCACTGCTTACATAATGTCCATGTCGTTGGGCTCCAAGAT
CCGGAAATTGGTCACCAGCAGACGGCACTTCCTGCTTTTGCGCCGATCGC
TGAACCAAGATCTGACAACGGCGCTGAGACCCTTCTACTTCGCGGTGCAT
CCTGACTTCTTTGCCCAGCATCCGGAGCAGAGGAACACCAACGAGAACTC
ACTGAAATTGCTGAGTGAGCATCTAGAGGCTTTGTATGAACGCAGACAGC
GAAGCGGGGACACCCAAGTGCTCAAGTTCTATGTACGCACCAGTTCAGAT
GCTGACAAGCGAGACTCCTTCAAGCTCATCCAAATACGCACGGACTGGCA
GAGTACCCGAGATCCCAAAACCTTTATTCAAGGTCTTCTGGAGTCATGCA
ACTTGTCCACGGAGTATGTGAAGAACATTAAGGCCCAGCCTGAGCCGCCA
AAAACCTCTGGCTTGGATTTTAAACCAAGCCATGACTATCACTATGACAT
GGAGTTCGCCGAGTTTGAAACTCAGTTGAAGAATGAACGTGCCAGTAAGC
GTCCAGTGCTGACCACCTGGCTGGAAGAGAATGCTGGCACAGCCAAACAG
CGCTCTAAGGAAACTGCGGATCTGCAGGCCGAAATCGACAAACTGAAAAA
AATGCTGGTAGAGAAACTGGAGTTGCAAGATGCTCGTTACGAGTGCGGCT
GGAACATTGAGCACTACCGTGGCTGTTTAAAGACCCTTGAGCGACTATCC
AACACCCATTTGTTGGAAATGGCTTCCCTGAAAGGTCGCATAGTGGTTTT
TGCTCCCTTTACGGGCATCAGTTTAGAAGGCCATGTGATGCTTTTTACTG
GTGATGTTCTCAGCACATGGATTGACTTCATCAAGAACATTCCGCACCAC
GATGCCTATTTAAAGGTGGTGCCCGTGTATGAACGAACACTGTCTCAGGT
TCTACTGAACATCCAGATAGGTCGTCGCAAGTTTATGCCCAAACAACAGG
CAAGTGGCTATGCAAGCTACCTCATGAAGGTCACCACTTCGCTCAGCGAT
TACCTGGGCAAACAAAAATATCCGCCGGAATGGCCGAAAACGCTGAAAGA
GTTTACCATAGTGGTGGAATCAGAGGCAGGTCCTCTGATGGTAAGCCCTA
CGGGCCAGTTTATCACACCAGCCACCTGTCCGGGATCCATACTCGTAGAC
TTCATCAGTGTAAATCTGGAGCTGGCCAGGGAGCGTATGAAGAAGTACGC
TCAGGACAAGCACATCGAGCAGGAGCTGATGGACTCGTGCATAAAGCAGC
TACAGTTGCAATCGCTGACCAAAGATGATGCCATAACCCCGGATAAAATG
ATAACATCCCTTAGAGATTTATACCAGCTTCAGTTGAAAGAACTGCAGGG
ATGCAAGCTTCACATAACCCACTACTATTCGGTACTGACCGACGGCGTTG
TGTGCATACCCTGGGATTTTCTGCAGAGGTAGTTGGATTTTCTCATGTGC
CTTATTAGTCAAAATAAACATAGTAATAATTTATAAAAAAAAAAAAAAAA

RE27477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13295-RA 1749 CG13295-RA 110..1742 3..1635 8165 100 Plus
CG13295.b 1862 CG13295.b 110..1685 3..1578 7880 100 Plus
CG13295.a 1575 CG13295.a 334..1575 394..1635 6210 100 Plus
CG13295.a 1575 CG13295.a 3..333 3..333 1655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6066145..6067144 1634..635 5000 100 Minus
chr3L 24539361 chr3L 6067202..6067629 635..208 2140 100 Minus
chr3L 24539361 chr3L 6067688..6067894 209..3 1035 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6073489..6074489 1635..635 5005 100 Minus
3L 28110227 3L 6074547..6074974 635..208 2140 100 Minus
3L 28110227 3L 6075033..6075239 209..3 1035 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6066589..6067589 1635..635 5005 100 Minus
3L 28103327 3L 6067647..6068074 635..208 2140 100 Minus
3L 28103327 3L 6068133..6068339 209..3 1035 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:41:53 has no hits.

RE27477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:42:53 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6066145..6067144 635..1634 100 <- Minus
chr3L 6067203..6067627 210..634 100 <- Minus
chr3L 6067688..6067895 1..209 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:22 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 1..1458 125..1582 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:06 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 1..1458 125..1582 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:45 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 1..1458 125..1582 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:30 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 1..1458 125..1582 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:20 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 1..1458 125..1582 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:37 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 2..1633 3..1634 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:06 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 2..1633 3..1634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:45 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 5..1638 1..1634 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:30 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 2..1633 3..1634 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:20 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
CG13295-RA 5..1638 1..1634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:53 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6074548..6074972 210..634 100 <- Minus
3L 6073490..6074489 635..1634 100 <- Minus
3L 6075033..6075240 1..209 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:53 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6074548..6074972 210..634 100 <- Minus
3L 6073490..6074489 635..1634 100 <- Minus
3L 6075033..6075240 1..209 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:42:53 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6074548..6074972 210..634 100 <- Minus
3L 6073490..6074489 635..1634 100 <- Minus
3L 6075033..6075240 1..209 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:45 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6066590..6067589 635..1634 100 <- Minus
arm_3L 6067648..6068072 210..634 100 <- Minus
arm_3L 6068133..6068340 1..209 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:08 Download gff for RE27477.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6066590..6067589 635..1634 100 <- Minus
3L 6067648..6068072 210..634 100 <- Minus
3L 6068133..6068340 1..209 99   Minus

RE27477.hyp Sequence

Translation from 124 to 1581

> RE27477.hyp
MSMSLGSKIRKLVTSRRHFLLLRRSLNQDLTTALRPFYFAVHPDFFAQHP
EQRNTNENSLKLLSEHLEALYERRQRSGDTQVLKFYVRTSSDADKRDSFK
LIQIRTDWQSTRDPKTFIQGLLESCNLSTEYVKNIKAQPEPPKTSGLDFK
PSHDYHYDMEFAEFETQLKNERASKRPVLTTWLEENAGTAKQRSKETADL
QAEIDKLKKMLVEKLELQDARYECGWNIEHYRGCLKTLERLSNTHLLEMA
SLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDAYLKVVP
VYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGKQKYP
PEWPKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLEL
ARERMKKYAQDKHIEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLY
QLQLKELQGCKLHITHYYSVLTDGVVCIPWDFLQR*

RE27477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13295-PA 485 CG13295-PA 1..485 1..485 2524 100 Plus
CG2854-PA 491 CG2854-PA 5..489 11..485 763 37.4 Plus

RE27477.pep Sequence

Translation from 124 to 1581

> RE27477.pep
MSMSLGSKIRKLVTSRRHFLLLRRSLNQDLTTALRPFYFAVHPDFFAQHP
EQRNTNENSLKLLSEHLEALYERRQRSGDTQVLKFYVRTSSDADKRDSFK
LIQIRTDWQSTRDPKTFIQGLLESCNLSTEYVKNIKAQPEPPKTSGLDFK
PSHDYHYDMEFAEFETQLKNERASKRPVLTTWLEENAGTAKQRSKETADL
QAEIDKLKKMLVEKLELQDARYECGWNIEHYRGCLKTLERLSNTHLLEMA
SLKGRIVVFAPFTGISLEGHVMLFTGDVLSTWIDFIKNIPHHDAYLKVVP
VYERTLSQVLLNIQIGRRKFMPKQQASGYASYLMKVTTSLSDYLGKQKYP
PEWPKTLKEFTIVVESEAGPLMVSPTGQFITPATCPGSILVDFISVNLEL
ARERMKKYAQDKHIEQELMDSCIKQLQLQSLTKDDAITPDKMITSLRDLY
QLQLKELQGCKLHITHYYSVLTDGVVCIPWDFLQR*

RE27477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10929-PA 487 GF10929-PA 1..484 1..482 2141 80.6 Plus
Dana\GF22210-PA 460 GF22210-PA 18..453 23..482 820 38.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14090-PA 485 GG14090-PA 1..485 1..485 2566 97.9 Plus
Dere\GG12929-PA 493 GG12929-PA 5..491 11..485 793 37.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16445-PA 482 GH16445-PA 1..482 5..485 1806 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13295-PA 485 CG13295-PA 1..485 1..485 2524 100 Plus
CG2854-PA 491 CG2854-PA 5..489 11..485 763 37.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16700-PA 493 GI16700-PA 30..493 21..485 1824 71 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15525-PA 496 GL15525-PA 7..496 1..485 2125 79.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12178-PA 496 GA12178-PA 7..496 1..485 2116 79.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13873-PA 485 GM13873-PA 1..485 1..485 2546 97.5 Plus
Dsec\GM19221-PA 491 GM19221-PA 5..489 11..485 787 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13157-PA 486 GD13157-PA 1..485 1..485 2549 98.1 Plus
Dsim\GD16606-PA 455 GD16606-PA 5..453 11..485 662 34.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12436-PA 489 GJ12436-PA 26..489 21..485 1845 71.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16928-PA 497 GK16928-PA 3..497 1..485 1908 73.4 Plus
Dwil\GK10330-PA 471 GK10330-PA 1..464 1..485 827 37 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20513-PA 485 GE20513-PA 1..485 1..485 2540 96.9 Plus
Dyak\GE16256-PA 508 GE16256-PA 5..506 11..485 774 35.5 Plus