Clone RE27507 Report

Search the DGRC for RE27507

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:275
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG11319-RA
Protein status:RE27507.pep: gold
Sequenced Size:4650

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11319 2002-01-01 Sim4 clustering to Release 2
CG11319 2002-06-13 Blastp of sequenced clone
CG11319 2003-01-01 Sim4 clustering to Release 3
CG11319 2008-04-29 Release 5.5 accounting
CG11319 2008-08-15 Release 5.9 accounting
CG11319 2008-12-18 5.12 accounting

Clone Sequence Records

RE27507.complete Sequence

4650 bp (4650 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122228

> RE27507.complete
AGTTTCATCTGAGACGTTTGGCGCAGCGGTCGATAGCAGAGGAAATCTGG
CCAAACGCTGTGAAAAAAAATACGAACAAGGAAAAAGAAGAAGGCGAAAA
CCTCAAAAATTCAGATAGCAAAACGTTAATTTCGAACTAAGTTATATACT
TGAGGTTGTCAATGAACTTTTTCGCCGGTCGAAAACTTGAAGAGTGAATA
GTGAAAAGTGATTCCGCAAGGACCTAGTCAAGTGTTGTGGTACTTGGGCG
CTGGCGGAGTTTTGCATTTGCCGTCGCTAATTGTGCAGCTGACAGGCGGC
AATCAGGAAGGAAAAACTTTTGCTCCTGCCGCCGGTAACGCTTCTTCCGC
TTCTCGCACTTCATCCAAATCCGTGACCGAATCCCGGGAAATTGTACGCC
TGCCAGGTCTCAAGCTGGACGATTACCGCAAAATGACACGTGTAGGCGCA
TTGTGCGCTTGGCCTAAAAGTATGCTGCATCATTAGTGTCTCAACAACGG
GCACAACTACACCAACGCCTACTACAACTACAACTACACCAACAAAGGAT
GAACTGTGCTGGCTGCAGCTGGGAAAACTAAGAATGCACGCTCATTAGGC
GGTGCAGACGCGGCGAGCAAAAGCGCACTGCGAGTTCCTAAGTCAAACGT
CGAAAAAACAACGCCCCTACCAAACCATAATTAGCAACAACAAAACAAGA
AGCACAGGGCAACGGGGCGTGGTCGACGCAAGGCGGAAGGACAGCTGGCA
AAAGTCAAGGACGAAAGTTGCCGAATAATTCGCGAAAGCATGACCATGGG
TAGTAACTTCAGTTATCTCGAATCCCACCAGACGCCCAAGGCGGACGCAG
CGAGCTGATTTTCACAACTAGACAAATAGCCAGAGCTTGCGAATAAATCG
CCTGGTGCAGCTGATAGATTCGATTAGCAGTCTGAAAAGCATAAAGCCAG
CGGACCACAGAGACAACAGCCGGCGGCTTCTTTAATTTGTCAACCAAACA
ACACCCACCCCACCGCGCCCATCGGACATCCGCTAAATCCATCGCCGTAA
GCCCACAAATATCGCGTCATGCCGGAGCAGGATAATTACGATGATGAGTT
GGTCTCCAGCAATCCCAACCAACGGAACTGGCGCGGAATTCTCATCGCGC
TGCTGGTCATCATCATTGTGCTGGCCCTGATTGTTACATCGGTGGTGCTG
CTCACGCCCCCCGATGAGGGACCGCGGGTCAAAGGGCAGCGCATCAAGCT
GCAGGACATCGTCGATGGCCTCTTCGTGCCGCAGCACTCCAACGGCAGCT
GGATCGATGGCGAGGAGTTCCTGTACCAGGACCATTTGGGTCGCATCTGT
CTGCTGAATGCAGCCAATCGCTCGGAACGTGTCCTCATGTCCAATGTGAC
ATTTAAAACCCTGTCACCCTTCACCTTCACCATATCGGCGGACAAGCGCT
ATCTGCTTCTGGCCCAGAATGTTGTGAAACTATTCCGGCACTCGTACTTG
GCCCAGTACACGCTCTACGACATTCAGACCAGCGAGAGCATCAAGCTGCG
CCACAGTCCGCACCAGGATGAATGGCCATACCTGCACTACGCACGATTTA
CGCCAGCTGGAAACGCACTGGTCTGGGTCCAGAGCTACGATATCTATTAC
CGAGAGGAGGTCCGCAGTGCGTCCGTGCATCGGATTACCCACGATGCGGT
GCCCGGAGTGGTGTACAACGGCATTCCCGATTGGCTGTACGAAGAGGAGA
TCCTTCATGCAAATAATGCAATTTGGATGTCCGACAATGGCCAACTGATG
CTGTATGCCACCTTCAACGACACGCACGTCCAGGAGCAGCACTTCGCCTG
GTACGGCACGACGGGTCCGTCCGCCGGTGGAGCAGCAGCTGCAGCGGCAG
TCGGCGCTGGAGGAGCCGGAACTGGGAGCCCAGGAGCTGGCGGCAGTAAT
CCGCATGCCAGCCTGTATCCGGAAATCAGGTCCTTACGCTACCCCAAGCC
GGGCACTCAGAATCCCACGGTAACCCTACGAGTGGCTGACCTAAAGGATC
CGCTGAAAGTTCACATCACCGACCTGCATCCTCCTCAGATTATAGCCAAT
GAAGATCACTACTTCAGCAGTGCCAGTTGGGTGAGTCACTCGAAGATCGC
GGTGGTGTGGCTAAATCGTCCGCAAAACATCTCGGTGGTCAGTGTGTGTA
AGGCTCCATTGTTCCAGTGCATCGAGACCCACCGGGTGAGCGGAGATGGA
CGTGGTTGGGTGGACACTGTCGCAGTGCCGCTGTTTGCCGCCAATGCCAG
CATCTACGTGGCCATATCCCCGCTACGAGATGGACTGTTTGGCTATTTCC
GGCACATTGTGCACGTGGACATCGACAAGAACCGCGTGCTGCCCCTCACC
CATGGGCCGTACGAAGTGAATCGATTGCTGCACTGGGATCAGCTGGATAA
TTGGATTTACTTTCTGGGAACTCCGGAGCGTCTTCCTTCGCAGCAGCATC
TGTATCGCGTATCCGCCCTGCCGGCCCGCCAAGGTCAGGCGCTTCGCTCA
CCCGACTGTCTGACTTGTCCGGCAGTGTCGCAGTGGTCCGAGGGCTACGA
CGAAGGTCACACCAAGTCGCCGCCCAAGCTGGTGACCGCCTGGGACGATG
ACTGGGAGGATTCCGAGGAAGCGGAGGCTCAACCGCCGCAGCCAGCTCTG
CCGGTGGAGCAACAGCCTCCGGGGCGGGGTCAAAGTGCTCCACTGCCACC
GCCTCCCAGTGATTGCCTGTACCACGAGGCGAAGTTTCCAATTTCGCGGC
AGGCGAAGTACGTACTAATCGATTGCCTGGGACCAGTGGTACCCACCTCC
ATACTATACGGCTTGAAATCCGCCGCTGCGGACAGTGCCAAGACGAAACG
ACACAGCACCCAGCAGGAAGAACCACCCACGGAGGGTGGTGATGAGAAAC
CAGGGGAGGAGCCGAAGTCTCAGTTCCTGGAACTCCTGGTCATCGTGCAG
AATAACACGCGCTTGAAGGAGAAGATGGCCAAGACGGCTATGCCGCAAAT
CAAGACCTTCCCCGTGATGATCTCCGGCGGTTATCATGCCCAGGTTCGAC
TATATCTGCCGCCTGTGCTGCGCGAGGACGAGATAACACGGTATCCCACC
ATTCTGCATGTTTACTCCGGACCCGGCAGTCAGCTGGTCACCGATCACTG
GCACGTCGATTGGAACACCTATTTGTCCGGCAGCAAGGATTACATTGTCG
TTGAGATCGACGGACGGGGATCTGCTGGACAGGGCTACCAGCTGCTCCAC
GAGGTCTACAAGCGTCTGGGCAGCGTGGAGGTCTCCGATCAACTGGAGGT
GAGCGAGTACCTCAGGGATAACCTGCACTTCATCGACTCACGCAGAATGG
GCGTCTGGGGCTGGAGTTACGGAGGATACACAGCCGCATTGGCCCTCGCC
GGACAGCAGTCCATTTTCCAGTGCGGCATCAGTGTGTCACCGGTTACCAA
TTGGAAGTTATATGATTCCACGTATGCGGAACGCTATCTGAGTTTCCCCA
ACGTGACGGACAACTACAAGGGCTACGAGGAGAGTGACCTGTCCAAGTAC
GTGGACAACCTGCGGGATCGCCAGTTCCTGCTGGTCCACGGAACCGCCGA
CGATAATGTCCATGTGCAGCAATCTATGGTCCTGGCCCGTTCTCTGACCA
GCAAGGGAGTGCTCTATAAGCAGCAGATATATCCGGATGAGGGGCACAGC
CTTTCGGGGGTTAAGCGGCACTTGTACCGCTCGATGACCGCCTTCTTTGA
GGATTGTTTCAAGAAACTGGTGCCGCCGGAGTCGAAAGCTGGTCTTGGCA
ATGGCGGCGATATGCAACAGCAATAAACTTAAATTATGGCAGCAGAAAAT
TCTGATAACAAAAGTATGGAACACAACAAACTTCAACCGGAACGTGCGAA
CGAAATGTTTTTCTGTAAATTGCATTCAATGTGATTTATCATGAACACAC
CCACGACACTCACATACACAGCAAGCGGCTAAATGGCAACTCAAATAGCC
AAACGGCGGCGGCGACGGCAAAAAAAGCAACAACTAAGTTAAATGGCATT
TTGTGTAAAATTAATAAGCAAAGCAGCAGCAGCAGCAGCAGCGAAATGCG
AAATGCGAAATGCCAACCTTACCGTAAACTAAATGGGAAATTCTAAGAAC
GAGCATAGTAGTAACTCAATAACTCCTAGAGAGCTCAAATGGCCAATGGG
CAGATATGGAAATCTATCCTAACCAACGAAATCGAATACAAGTTGTTAGT
TATGTTGTTTAATGTAAATAAGCTTTAAGGTGGCTAGCTCAATTCAATTA
CTTTGTTTACTCCTTTCGTTAATGAGTGTTTGGAAATTAATTACTTAAGC
CGAATTACTTACTTAAGCGAAAACAAAACCTTTGTGATCCAACAAGTTTC
TTCTCTTCCATGAAGCAAAACCAAACTAACCAATATAATAATATGAATTT
AAAATTAATATGTAATTACATTGACTTAATTAGCTGAGACGTTCAATAAT
TTCGCCTGGCATTTAGTAATGGAAATCGTGAAAAGCGGAAATACCTAAAA
TATATATGAAAGCATGAAGCCAAAAAGCAAACCAAAAAAAAAAAAAAAAA

RE27507.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11319-RA 4670 CG11319-RA 28..4660 1..4632 23125 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6573375..6574432 3514..2457 5290 100 Minus
chr2L 23010047 chr2L 6585482..6586125 1098..455 3175 99.5 Minus
chr2L 23010047 chr2L 6567379..6567844 4632..4167 2315 99.8 Minus
chr2L 23010047 chr2L 6599605..6600084 455..1 1905 94.6 Minus
chr2L 23010047 chr2L 6571176..6571527 4166..3815 1730 99.4 Minus
chr2L 23010047 chr2L 6572991..6573298 3821..3514 1540 100 Minus
chr2L 23010047 chr2L 6575824..6576069 1988..1743 1230 100 Minus
chr2L 23010047 chr2L 6576355..6576569 1744..1530 1075 100 Minus
chr2L 23010047 chr2L 6576630..6576757 1532..1405 640 100 Minus
chr2L 23010047 chr2L 6575018..6575141 2226..2103 590 98.4 Minus
chr2L 23010047 chr2L 6578238..6578358 1314..1194 590 99.2 Minus
chr2L 23010047 chr2L 6574590..6574705 2456..2341 580 100 Minus
chr2L 23010047 chr2L 6574825..6574942 2342..2225 575 99.2 Minus
chr2L 23010047 chr2L 6575230..6575344 2102..1988 560 99.1 Minus
chr2L 23010047 chr2L 6579403..6579502 1196..1097 500 100 Minus
chr2L 23010047 chr2L 6577882..6577977 1404..1309 480 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6574398..6575455 3514..2457 5290 100 Minus
2L 23513712 2L 6586501..6587144 1098..455 3220 100 Minus
2L 23513712 2L 6568400..6568865 4632..4167 2330 100 Minus
2L 23513712 2L 6600611..6601066 455..1 2230 99.8 Minus
2L 23513712 2L 6572196..6572547 4166..3815 1745 99.7 Minus
2L 23513712 2L 6574014..6574321 3821..3514 1540 100 Minus
2L 23513712 2L 6576847..6577092 1988..1743 1230 100 Minus
2L 23513712 2L 6577378..6577592 1744..1530 1075 100 Minus
2L 23513712 2L 6577653..6577780 1532..1405 640 100 Minus
2L 23513712 2L 6576041..6576164 2226..2103 620 100 Minus
2L 23513712 2L 6575848..6575965 2342..2225 590 100 Minus
2L 23513712 2L 6579262..6579382 1314..1194 590 99.2 Minus
2L 23513712 2L 6575613..6575728 2456..2341 580 100 Minus
2L 23513712 2L 6576253..6576367 2102..1988 575 100 Minus
2L 23513712 2L 6580413..6580512 1196..1097 500 100 Minus
2L 23513712 2L 6578905..6579000 1404..1309 480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6574398..6575455 3514..2457 5290 100 Minus
2L 23513712 2L 6586501..6587144 1098..455 3220 100 Minus
2L 23513712 2L 6568400..6568865 4632..4167 2330 100 Minus
2L 23513712 2L 6600611..6601066 455..1 2240 99.7 Minus
2L 23513712 2L 6572196..6572547 4166..3815 1745 99.7 Minus
2L 23513712 2L 6574014..6574321 3821..3514 1540 100 Minus
2L 23513712 2L 6576847..6577092 1988..1743 1230 100 Minus
2L 23513712 2L 6577378..6577592 1744..1530 1075 100 Minus
2L 23513712 2L 6577653..6577780 1532..1405 640 100 Minus
2L 23513712 2L 6576041..6576164 2226..2103 620 100 Minus
2L 23513712 2L 6575848..6575965 2342..2225 590 100 Minus
2L 23513712 2L 6579262..6579382 1314..1194 590 99.1 Minus
2L 23513712 2L 6575613..6575728 2456..2341 580 100 Minus
2L 23513712 2L 6576253..6576367 2102..1988 575 100 Minus
2L 23513712 2L 6580413..6580512 1196..1097 500 100 Minus
2L 23513712 2L 6578905..6579000 1404..1309 480 100 Minus
Blast to na_te.dros performed 2019-03-16 04:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 5044..5163 4468..4589 154 62.9 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1145..1210 4532..4467 131 70.1 Minus
Tc3 1743 Tc3 TC3 1743bp 253..294 4524..4483 120 76.2 Minus

RE27507.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:55:49 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6567378..6567844 4167..4633 93 <- Minus
chr2L 6571176..6571522 3820..4166 93 <- Minus
chr2L 6572993..6573297 3515..3819 100 <- Minus
chr2L 6573375..6574432 2457..3514 100 <- Minus
chr2L 6574590..6574704 2342..2456 100 <- Minus
chr2L 6574826..6574940 2227..2341 99 <- Minus
chr2L 6575018..6575141 2103..2226 98 <- Minus
chr2L 6575230..6575343 1989..2102 99 <- Minus
chr2L 6575824..6576067 1745..1988 100 <- Minus
chr2L 6576355..6576566 1533..1744 100 <- Minus
chr2L 6576630..6576757 1405..1532 100 <- Minus
chr2L 6577882..6577976 1310..1404 100 <- Minus
chr2L 6578243..6578357 1195..1309 100 <- Minus
chr2L 6579405..6579500 1099..1194 100 <- Minus
chr2L 6585482..6586124 456..1098 99 <- Minus
chr2L 6599605..6600084 1..455 94   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:47:56 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..2808 1069..3876 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:09 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..2808 1069..3876 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:34 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..2808 1069..3876 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:01 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..2808 1069..3876 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:22 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..2808 1069..3876 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:55 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..4633 1..4633 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:09 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..4633 1..4633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:34 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 3..4635 1..4632 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:01 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1..4633 1..4633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:22 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 3..4635 1..4632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:49 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6574016..6574320 3515..3819 100 <- Minus
2L 6568399..6568865 4167..4633 99 <- Minus
2L 6572196..6572542 3820..4166 100 <- Minus
2L 6574398..6575455 2457..3514 100 <- Minus
2L 6575613..6575727 2342..2456 100 <- Minus
2L 6575849..6575963 2227..2341 100 <- Minus
2L 6576041..6576164 2103..2226 100 <- Minus
2L 6576253..6576366 1989..2102 100 <- Minus
2L 6576847..6577090 1745..1988 100 <- Minus
2L 6577378..6577589 1533..1744 100 <- Minus
2L 6577653..6577780 1405..1532 100 <- Minus
2L 6578905..6578999 1310..1404 100 <- Minus
2L 6579267..6579381 1195..1309 100 <- Minus
2L 6580415..6580510 1099..1194 100 <- Minus
2L 6586501..6587143 456..1098 100 <- Minus
2L 6600611..6601066 1..455 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:49 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6574016..6574320 3515..3819 100 <- Minus
2L 6568399..6568865 4167..4633 99 <- Minus
2L 6572196..6572542 3820..4166 100 <- Minus
2L 6574398..6575455 2457..3514 100 <- Minus
2L 6575613..6575727 2342..2456 100 <- Minus
2L 6575849..6575963 2227..2341 100 <- Minus
2L 6576041..6576164 2103..2226 100 <- Minus
2L 6576253..6576366 1989..2102 100 <- Minus
2L 6576847..6577090 1745..1988 100 <- Minus
2L 6577378..6577589 1533..1744 100 <- Minus
2L 6577653..6577780 1405..1532 100 <- Minus
2L 6578905..6578999 1310..1404 100 <- Minus
2L 6579267..6579381 1195..1309 100 <- Minus
2L 6580415..6580510 1099..1194 100 <- Minus
2L 6586501..6587143 456..1098 100 <- Minus
2L 6600611..6601066 1..455 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:49 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6574016..6574320 3515..3819 100 <- Minus
2L 6568399..6568865 4167..4633 99 <- Minus
2L 6572196..6572542 3820..4166 100 <- Minus
2L 6574398..6575455 2457..3514 100 <- Minus
2L 6575613..6575727 2342..2456 100 <- Minus
2L 6575849..6575963 2227..2341 100 <- Minus
2L 6576041..6576164 2103..2226 100 <- Minus
2L 6576253..6576366 1989..2102 100 <- Minus
2L 6576847..6577090 1745..1988 100 <- Minus
2L 6577378..6577589 1533..1744 100 <- Minus
2L 6577653..6577780 1405..1532 100 <- Minus
2L 6578905..6578999 1310..1404 100 <- Minus
2L 6579267..6579381 1195..1309 100 <- Minus
2L 6580415..6580510 1099..1194 100 <- Minus
2L 6586501..6587143 456..1098 100 <- Minus
2L 6600611..6601066 1..455 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:34 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6568399..6568865 4167..4633 99 <- Minus
arm_2L 6572196..6572542 3820..4166 100 <- Minus
arm_2L 6574016..6574320 3515..3819 100 <- Minus
arm_2L 6574398..6575455 2457..3514 100 <- Minus
arm_2L 6575613..6575727 2342..2456 100 <- Minus
arm_2L 6575849..6575963 2227..2341 100 <- Minus
arm_2L 6576041..6576164 2103..2226 100 <- Minus
arm_2L 6576253..6576366 1989..2102 100 <- Minus
arm_2L 6576847..6577090 1745..1988 100 <- Minus
arm_2L 6577378..6577589 1533..1744 100 <- Minus
arm_2L 6577653..6577780 1405..1532 100 <- Minus
arm_2L 6578905..6578999 1310..1404 100 <- Minus
arm_2L 6579267..6579381 1195..1309 100 <- Minus
arm_2L 6580415..6580510 1099..1194 100 <- Minus
arm_2L 6586501..6587143 456..1098 100 <- Minus
arm_2L 6600611..6601066 1..455 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:36 Download gff for RE27507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6576041..6576164 2103..2226 100 <- Minus
2L 6576253..6576366 1989..2102 100 <- Minus
2L 6576847..6577090 1745..1988 100 <- Minus
2L 6568399..6568865 4167..4633 99 <- Minus
2L 6572196..6572542 3820..4166 100 <- Minus
2L 6574016..6574320 3515..3819 100 <- Minus
2L 6574398..6575455 2457..3514 100 <- Minus
2L 6575613..6575727 2342..2456 100 <- Minus
2L 6575849..6575963 2227..2341 100 <- Minus
2L 6577378..6577589 1533..1744 100 <- Minus
2L 6577653..6577780 1405..1532 100 <- Minus
2L 6578905..6578999 1310..1404 100 <- Minus
2L 6579267..6579381 1195..1309 100 <- Minus
2L 6580415..6580510 1099..1194 100 <- Minus
2L 6586501..6587143 456..1098 100 <- Minus
2L 6600611..6601066 1..455 99   Minus

RE27507.pep Sequence

Translation from 1068 to 3875

> RE27507.pep
MPEQDNYDDELVSSNPNQRNWRGILIALLVIIIVLALIVTSVVLLTPPDE
GPRVKGQRIKLQDIVDGLFVPQHSNGSWIDGEEFLYQDHLGRICLLNAAN
RSERVLMSNVTFKTLSPFTFTISADKRYLLLAQNVVKLFRHSYLAQYTLY
DIQTSESIKLRHSPHQDEWPYLHYARFTPAGNALVWVQSYDIYYREEVRS
ASVHRITHDAVPGVVYNGIPDWLYEEEILHANNAIWMSDNGQLMLYATFN
DTHVQEQHFAWYGTTGPSAGGAAAAAAVGAGGAGTGSPGAGGSNPHASLY
PEIRSLRYPKPGTQNPTVTLRVADLKDPLKVHITDLHPPQIIANEDHYFS
SASWVSHSKIAVVWLNRPQNISVVSVCKAPLFQCIETHRVSGDGRGWVDT
VAVPLFAANASIYVAISPLRDGLFGYFRHIVHVDIDKNRVLPLTHGPYEV
NRLLHWDQLDNWIYFLGTPERLPSQQHLYRVSALPARQGQALRSPDCLTC
PAVSQWSEGYDEGHTKSPPKLVTAWDDDWEDSEEAEAQPPQPALPVEQQP
PGRGQSAPLPPPPSDCLYHEAKFPISRQAKYVLIDCLGPVVPTSILYGLK
SAAADSAKTKRHSTQQEEPPTEGGDEKPGEEPKSQFLELLVIVQNNTRLK
EKMAKTAMPQIKTFPVMISGGYHAQVRLYLPPVLREDEITRYPTILHVYS
GPGSQLVTDHWHVDWNTYLSGSKDYIVVEIDGRGSAGQGYQLLHEVYKRL
GSVEVSDQLEVSEYLRDNLHFIDSRRMGVWGWSYGGYTAALALAGQQSIF
QCGISVSPVTNWKLYDSTYAERYLSFPNVTDNYKGYEESDLSKYVDNLRD
RQFLLVHGTADDNVHVQQSMVLARSLTSKGVLYKQQIYPDEGHSLSGVKR
HLYRSMTAFFEDCFKKLVPPESKAGLGNGGDMQQQ*

RE27507.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15695-PA 947 GF15695-PA 1..947 1..935 4347 91.4 Plus
Dana\GF21833-PA 1092 GF21833-PA 276..975 183..914 981 30.9 Plus
Dana\GF24616-PA 806 GF24616-PA 527..796 644..914 673 47.4 Plus
Dana\GF15583-PA 555 GF15583-PA 276..555 639..919 549 38.3 Plus
Dana\GF24616-PA 806 GF24616-PA 15..474 8..503 493 27.9 Plus
Dana\GF18681-PA 1018 GF18681-PA 824..1011 691..876 341 36.8 Plus
Dana\GF21833-PA 1092 GF21833-PA 39..201 8..175 311 36.9 Plus
Dana\GF15583-PA 555 GF15583-PA 1..329 221..575 241 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23608-PA 935 GG23608-PA 1..935 1..935 4922 98 Plus
Dere\GG18210-PA 1081 GG18210-PA 276..964 183..914 982 30.6 Plus
Dere\GG15695-PA 1040 GG15695-PA 761..1030 644..914 697 48.2 Plus
Dere\GG25098-PA 754 GG25098-PA 399..753 565..922 554 33.8 Plus
Dere\GG15695-PA 1040 GG15695-PA 308..708 59..503 491 29.5 Plus
Dere\GG25098-PA 754 GG25098-PA 58..428 75..503 464 28.5 Plus
Dere\GG12305-PA 1043 GG12305-PA 817..1027 691..899 371 35.2 Plus
Dere\GG18210-PA 1081 GG18210-PA 39..201 8..175 310 36.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13603-PA 940 GH13603-PA 1..940 1..935 4045 83.1 Plus
Dgri\GH14757-PA 1047 GH14757-PA 264..1037 10..914 1131 31.3 Plus
Dgri\GH24508-PA 1107 GH24508-PA 306..1010 183..914 954 30.6 Plus
Dgri\GH13562-PA 835 GH13562-PA 40..495 20..510 649 30.2 Plus
Dgri\GH10923-PA 747 GH10923-PA 473..741 646..915 567 40.2 Plus
Dgri\GH13562-PA 835 GH13562-PA 544..827 640..926 522 40.3 Plus
Dgri\GH10923-PA 747 GH10923-PA 51..410 75..479 460 30.7 Plus
Dgri\GH24508-PA 1107 GH24508-PA 39..201 8..175 304 36.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11319-PC 935 CG11319-PC 1..935 1..935 4994 100 Plus
CG11319-PA 935 CG11319-PA 1..935 1..935 4994 100 Plus
CG11319-PB 940 CG11319-PB 1..923 1..923 4902 99.3 Plus
CG45002-PF 969 CG45002-PF 263..951 183..914 999 30.3 Plus
CG45002-PI 974 CG45002-PI 268..956 183..914 999 30.3 Plus
CG45002-PJ 982 CG45002-PJ 276..964 183..914 999 30.3 Plus
CG45002-PH 985 CG45002-PH 279..967 183..914 999 30.3 Plus
CG45002-PD 985 CG45002-PD 279..967 183..914 999 30.3 Plus
CG45002-PG 1082 CG45002-PG 263..951 183..914 999 30.3 Plus
CG45002-PE 1098 CG45002-PE 279..967 183..914 999 30.3 Plus
CG17684-PC 855 CG17684-PC 30..517 2..510 717 31.3 Plus
ome-PH 784 CG42280-PH 505..774 644..914 693 48.2 Plus
ome-PF 802 CG32145-PA 523..792 644..914 693 48.2 Plus
ome-PE 923 CG42280-PE 644..913 644..914 693 48.2 Plus
ome-PG 1040 CG32145-PB 761..1030 644..914 693 48.2 Plus
CG17684-PD 483 CG17684-PD 30..466 2..455 623 30.9 Plus
CG17684-PC 855 CG17684-PC 579..849 651..928 581 41.9 Plus
CG11034-PC 751 CG11034-PC 475..741 646..913 554 39 Plus
CG11034-PB 751 CG11034-PB 475..741 646..913 554 39 Plus
ome-PF 802 CG32145-PA 15..467 8..500 516 28.7 Plus
ome-PH 784 CG42280-PH 12..449 24..500 510 28.9 Plus
ome-PE 923 CG42280-PE 151..588 24..500 510 28.9 Plus
ome-PG 1040 CG32145-PB 268..705 24..500 510 28.9 Plus
CG11034-PC 751 CG11034-PC 57..414 75..479 443 29 Plus
CG11034-PB 751 CG11034-PB 57..414 75..479 443 29 Plus
CG3744-PF 1042 CG3744-PF 816..1026 691..899 368 35.2 Plus
CG3744-PE 1042 CG3744-PE 816..1026 691..899 368 35.2 Plus
CG3744-PG 1102 CG3744-PG 876..1086 691..899 368 35.2 Plus
CG3744-PD 1102 CG3744-PD 876..1086 691..899 368 35.2 Plus
CG45002-PH 985 CG45002-PH 39..206 8..180 310 37 Plus
CG45002-PD 985 CG45002-PD 39..206 8..180 310 37 Plus
CG45002-PE 1098 CG45002-PE 39..206 8..180 310 37 Plus
CG45002-PF 969 CG45002-PF 16..190 1..180 305 35.6 Plus
CG45002-PG 1082 CG45002-PG 16..190 1..180 305 35.6 Plus
CG45002-PI 974 CG45002-PI 29..195 9..180 304 36.6 Plus
CG45002-PJ 982 CG45002-PJ 38..203 10..180 302 36.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18176-PA 934 GI18176-PA 1..934 1..935 4074 83.7 Plus
Dmoj\GI11500-PA 800 GI11500-PA 15..790 8..914 1142 32.2 Plus
Dmoj\GI13357-PA 724 GI13357-PA 469..719 646..916 517 38.2 Plus
Dmoj\GI15832-PA 644 GI15832-PA 333..546 700..914 509 42.6 Plus
Dmoj\GI13357-PA 724 GI13357-PA 49..483 75..546 461 28.5 Plus
Dmoj\GI22496-PA 1123 GI22496-PA 897..1107 691..899 364 35.2 Plus
Dmoj\GI15832-PA 644 GI15832-PA 39..182 8..179 253 33.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25550-PA 941 GL25550-PA 1..941 1..934 4297 90.5 Plus
Dper\GL18302-PA 1073 GL18302-PA 271..963 183..914 998 30.8 Plus
Dper\GL24556-PA 230 GL24556-PA 2..220 695..914 584 49.3 Plus
Dper\GL19035-PA 721 GL19035-PA 446..718 646..921 552 40.1 Plus
Dper\GL19035-PA 721 GL19035-PA 70..396 119..503 419 28.8 Plus
Dper\GL22341-PA 1046 GL22341-PA 820..1030 691..899 365 35.2 Plus
Dper\GL18302-PA 1073 GL18302-PA 40..206 8..179 306 36 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10914-PA 941 GA10914-PA 1..941 1..934 4294 90.3 Plus
Dpse\GA16711-PA 1039 GA16711-PA 255..1029 11..914 1090 31.1 Plus
Dpse\GA27422-PA 1075 GA27422-PA 271..965 183..914 993 30.8 Plus
Dpse\GA10719-PA 750 GA10719-PA 468..747 639..921 554 39.4 Plus
Dpse\GA10719-PA 750 GA10719-PA 55..425 75..503 471 28.9 Plus
Dpse\GA17656-PA 1045 GA17656-PA 819..1029 691..899 365 35.2 Plus
Dpse\GA27422-PA 1075 GA27422-PA 40..206 8..179 308 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14100-PA 520 GM14100-PA 1..518 1..519 2280 92.9 Plus
Dsec\GM19353-PA 759 GM19353-PA 1..642 223..914 891 29.6 Plus
Dsec\GM14111-PA 148 GM14111-PA 1..143 777..919 768 99.3 Plus
Dsec\GM25479-PA 1018 GM25479-PA 739..1008 644..914 697 48.2 Plus
Dsec\GM13348-PA 612 GM13348-PA 48..610 154..761 637 28.4 Plus
Dsec\GM25479-PA 1018 GM25479-PA 239..686 11..503 481 27.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22563-PA 678 GD22563-PA 1..447 1..447 2352 98.2 Plus
Dsim\GD22563-PA 678 GD22563-PA 446..678 703..935 1215 97.9 Plus
Dsim\GD15708-PA 637 GD15708-PA 207..520 563..914 681 37.1 Plus
Dsim\GD14501-PA 966 GD14501-PA 702..956 644..914 604 44.6 Plus
Dsim\GD23364-PA 743 GD23364-PA 467..735 646..915 550 38.4 Plus
Dsim\GD14501-PA 966 GD14501-PA 184..649 11..503 491 27.7 Plus
Dsim\GD23364-PA 743 GD23364-PA 6..417 24..503 411 27.2 Plus
Dsim\GD15708-PA 637 GD15708-PA 39..162 8..131 295 44.4 Plus
Dsim\GD18255-PA 125 GD18255-PA 1..109 791..899 188 34.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14632-PA 943 GJ14632-PA 13..943 7..935 4075 84.6 Plus
Dvir\GJ13694-PA 1062 GJ13694-PA 281..1052 10..914 1109 31.5 Plus
Dvir\GJ18686-PA 1057 GJ18686-PA 285..963 183..914 1002 31.5 Plus
Dvir\GJ11997-PA 743 GJ11997-PA 389..736 564..914 555 35.9 Plus
Dvir\GJ21972-PA 514 GJ21972-PA 261..506 640..887 437 39.8 Plus
Dvir\GJ11997-PA 743 GJ11997-PA 60..419 75..503 423 28.1 Plus
Dvir\GJ21972-PA 514 GJ21972-PA 24..201 300..481 315 32.4 Plus
Dvir\GJ18686-PA 1057 GJ18686-PA 39..205 8..179 300 37 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14793-PA 1009 GK14793-PA 80..1009 11..935 4096 84.7 Plus
Dwil\GK10533-PA 805 GK10533-PA 15..795 8..914 1084 30.4 Plus
Dwil\GK25230-PA 1092 GK25230-PA 273..988 183..914 969 30.3 Plus
Dwil\GK14699-PA 481 GK14699-PA 157..476 566..923 539 31.8 Plus
Dwil\GK14030-PA 309 GK14030-PA 82..308 690..912 364 33.6 Plus
Dwil\GK25230-PA 1092 GK25230-PA 38..200 8..175 301 36.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18428-PA 936 GE18428-PA 1..936 1..935 4862 97.1 Plus
Dyak\GE15628-PA 1089 GE15628-PA 282..970 183..914 985 30.7 Plus
Dyak\GE22026-PA 1066 GE22026-PA 787..1056 644..914 695 48.2 Plus
Dyak\GE25657-PA 752 GE25657-PA 397..751 565..922 559 34.3 Plus
Dyak\GE22026-PA 1066 GE22026-PA 283..734 11..503 487 29.3 Plus
Dyak\GE25657-PA 752 GE25657-PA 6..426 24..503 465 27.8 Plus
Dyak\GE10760-PA 1044 GE10760-PA 818..1028 691..899 371 35.2 Plus
Dyak\GE15628-PA 1089 GE15628-PA 39..200 8..174 309 37.1 Plus

RE27507.hyp Sequence

Translation from 1068 to 3875

> RE27507.hyp
MPEQDNYDDELVSSNPNQRNWRGILIALLVIIIVLALIVTSVVLLTPPDE
GPRVKGQRIKLQDIVDGLFVPQHSNGSWIDGEEFLYQDHLGRICLLNAAN
RSERVLMSNVTFKTLSPFTFTISADKRYLLLAQNVVKLFRHSYLAQYTLY
DIQTSESIKLRHSPHQDEWPYLHYARFTPAGNALVWVQSYDIYYREEVRS
ASVHRITHDAVPGVVYNGIPDWLYEEEILHANNAIWMSDNGQLMLYATFN
DTHVQEQHFAWYGTTGPSAGGAAAAAAVGAGGAGTGSPGAGGSNPHASLY
PEIRSLRYPKPGTQNPTVTLRVADLKDPLKVHITDLHPPQIIANEDHYFS
SASWVSHSKIAVVWLNRPQNISVVSVCKAPLFQCIETHRVSGDGRGWVDT
VAVPLFAANASIYVAISPLRDGLFGYFRHIVHVDIDKNRVLPLTHGPYEV
NRLLHWDQLDNWIYFLGTPERLPSQQHLYRVSALPARQGQALRSPDCLTC
PAVSQWSEGYDEGHTKSPPKLVTAWDDDWEDSEEAEAQPPQPALPVEQQP
PGRGQSAPLPPPPSDCLYHEAKFPISRQAKYVLIDCLGPVVPTSILYGLK
SAAADSAKTKRHSTQQEEPPTEGGDEKPGEEPKSQFLELLVIVQNNTRLK
EKMAKTAMPQIKTFPVMISGGYHAQVRLYLPPVLREDEITRYPTILHVYS
GPGSQLVTDHWHVDWNTYLSGSKDYIVVEIDGRGSAGQGYQLLHEVYKRL
GSVEVSDQLEVSEYLRDNLHFIDSRRMGVWGWSYGGYTAALALAGQQSIF
QCGISVSPVTNWKLYDSTYAERYLSFPNVTDNYKGYEESDLSKYVDNLRD
RQFLLVHGTADDNVHVQQSMVLARSLTSKGVLYKQQIYPDEGHSLSGVKR
HLYRSMTAFFEDCFKKLVPPESKAGLGNGGDMQQQ*

RE27507.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11319-PC 935 CG11319-PC 1..935 1..935 4994 100 Plus
CG11319-PA 935 CG11319-PA 1..935 1..935 4994 100 Plus
CG11319-PB 940 CG11319-PB 1..923 1..923 4902 99.3 Plus
CG45002-PF 969 CG45002-PF 263..951 183..914 999 30.3 Plus
CG17684-PC 855 CG17684-PC 30..517 2..510 717 31.3 Plus
CG45002-PF 969 CG45002-PF 16..190 1..180 305 35.6 Plus