Clone RE27547 Report

Search the DGRC for RE27547

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:275
Well:47
Vector:pFlc-1
Associated Gene/TranscriptSpn43Ad-RA
Protein status:RE27547.pep: gold
Sequenced Size:1446

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1859 2001-12-14 Blastp of sequenced clone
CG1859 2002-01-01 Sim4 clustering to Release 2
CG1859 2003-01-01 Sim4 clustering to Release 3
Spn43Ad 2008-04-29 Release 5.5 accounting
Spn43Ad 2008-08-15 Release 5.9 accounting
Spn43Ad 2008-12-18 5.12 accounting

Clone Sequence Records

RE27547.complete Sequence

1446 bp (1446 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071238

> RE27547.complete
AGTTGTGTGTAAGCCACTGGATCATTAACATTAGCATTAGTCGAAGCTTG
GTATTTCCCAAAACATGATCCACTGGAGACTTCTTTCCGCCCTACTTGTG
GGCCTGGCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCCAG
ATCGCCGGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTACTA
AGTTGGGACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGCTT
ATACAGGCGGCGCTCAGCCTGCTGTATGCGGAAAGTTCTTCGGAGTACGG
TAGCCAACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAAGC
TTGCGGTGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGGCT
GCCATTGGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAGCG
CTTCACCTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAATGG
GCGTCGGCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCCAG
GATATCAACTACGCCTTCCTTAGCCGCAGCAACTTCAGCCTGGGGGAGCT
CGTCAGTGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTTTT
TACACGTCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCGAT
CCTACCGAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCCAG
GCTGGTGGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGTGC
CCGCTCTGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACCTC
CGAATGCTCATTGTATTTCCCAATCGGCCTGATGGCCTGGCCCAACTTGA
GAGGAAGCTGGCGCAGTCCGATCTCCACCAGCTAAGGTCCCAGCTCGAGG
AGCGCAAGGTGGCCCTCACTCTGCCCAAGCTCAGAGTGCTAGTCCACTCC
GACCTGAAGCACGTGCTCGAGGAGTTGGGTCTGGCAAAACTATTCACATC
GGAGGTCCACCTGAGCGAGGTCTTCAGCTCCATCCTGTCCAGTTCGGCTC
CACCCTTGGGAGCAGTGGTCCAGAGTGGTCTCCTGGAGCTACAGGAGGAT
GGCGGCAATGCCGACGACTCGTTCTCCTTCGGGGATCTGTTCCGACGAGC
CCTGCCCCTGGTCATCAATCACCCGTTCTTTTACGCCATCGGCAATGGCA
AAACTCTGCTGCTGTCCGGCCACATCGTCGACATCTGAGTCTTTCTAGGC
ATACCTAATTCTCGATTCCAATGCTAGTTCAAGCCGGGCGGGCTATCGCC
TTATCAGCCCCACTCAAATCTCCGCGAAATAAACAGAATCACCCGTGGCC
AGCCAAAGGTGACAAATGATTTGTAAACACAAAAAAAAAAAAAAAA

RE27547.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Ad-RA 1431 Spn43Ad-RA 1..1431 1..1431 7155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3041805..3042828 1024..1 5120 100 Minus
chr2R 21145070 chr2R 3041144..3041398 1430..1176 1275 100 Minus
chr2R 21145070 chr2R 3041456..3041608 1175..1023 765 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7154399..7155422 1024..1 5120 100 Minus
2R 25286936 2R 7153737..7153992 1431..1176 1280 100 Minus
2R 25286936 2R 7154050..7154202 1175..1023 765 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7155598..7156621 1024..1 5120 100 Minus
2R 25260384 2R 7154936..7155191 1431..1176 1280 100 Minus
2R 25260384 2R 7155249..7155401 1175..1023 765 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:09:33 has no hits.

RE27547.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:10:14 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3041144..3041398 1176..1430 100 <- Minus
chr2R 3041456..3041606 1025..1175 100 <- Minus
chr2R 3041805..3042828 1..1024 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:27 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1224 65..1288 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:30 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1224 65..1288 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:56:52 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1224 65..1288 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:07 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1224 65..1288 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:02 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1224 65..1288 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:33:24 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1430 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:30 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1430 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:56:52 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 3..1432 1..1430 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:07 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 1..1430 1..1430 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:02 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
Spn43Ad-RA 3..1432 1..1430 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:14 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7154050..7154200 1025..1175 100 <- Minus
2R 7153738..7153992 1176..1430 100 <- Minus
2R 7154399..7155422 1..1024 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:14 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7154050..7154200 1025..1175 100 <- Minus
2R 7153738..7153992 1176..1430 100 <- Minus
2R 7154399..7155422 1..1024 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:14 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7154050..7154200 1025..1175 100 <- Minus
2R 7153738..7153992 1176..1430 100 <- Minus
2R 7154399..7155422 1..1024 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:56:52 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3041243..3041497 1176..1430 100 <- Minus
arm_2R 3041555..3041705 1025..1175 100 <- Minus
arm_2R 3041904..3042927 1..1024 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:18 Download gff for RE27547.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7154937..7155191 1176..1430 100 <- Minus
2R 7155249..7155399 1025..1175 100 <- Minus
2R 7155598..7156621 1..1024 100   Minus

RE27547.hyp Sequence

Translation from 64 to 1287

> RE27547.hyp
MIHWRLLSALLVGLAIALTLPVDGELLARSPASVSSNRFGLRLTTKLGLT
QPDANVVVSPLLIQAALSLLYAESSSEYGSQLRQALELTHASHPKLAVQD
FETLLTDLKQSAAIGCRLRLLSDLYAQQRFTFNFRNEFETLAARMGVGCH
RLSWESASNAAQDINYAFLSRSNFSLGELVSAPQLESLAEHNTPFLHVSG
VTFRAPWAWAFDPTETQSINFFAGGNRPRLVDAMFGQHRYRYAEVPALDA
QLIEVPFATADLRMLIVFPNRPDGLAQLERKLAQSDLHQLRSQLEERKVA
LTLPKLRVLVHSDLKHVLEELGLAKLFTSEVHLSEVFSSILSSSAPPLGA
VVQSGLLELQEDGGNADDSFSFGDLFRRALPLVINHPFFYAIGNGKTLLL
SGHIVDI*

RE27547.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Ad-PA 407 CG1859-PA 1..407 1..407 2049 100 Plus
Spn42Da-PL 379 CG9453-PL 16..376 39..404 361 28.5 Plus
Spn42Da-PK 379 CG9453-PK 16..376 39..404 361 28.5 Plus
Spn42Da-PH 379 CG9453-PH 16..376 39..404 361 28.5 Plus
Spn42Da-PG 379 CG9453-PG 16..376 39..404 361 29 Plus

RE27547.pep Sequence

Translation from 64 to 1287

> RE27547.pep
MIHWRLLSALLVGLAIALTLPVDGELLARSPASVSSNRFGLRLTTKLGLT
QPDANVVVSPLLIQAALSLLYAESSSEYGSQLRQALELTHASHPKLAVQD
FETLLTDLKQSAAIGCRLRLLSDLYAQQRFTFNFRNEFETLAARMGVGCH
RLSWESASNAAQDINYAFLSRSNFSLGELVSAPQLESLAEHNTPFLHVSG
VTFRAPWAWAFDPTETQSINFFAGGNRPRLVDAMFGQHRYRYAEVPALDA
QLIEVPFATADLRMLIVFPNRPDGLAQLERKLAQSDLHQLRSQLEERKVA
LTLPKLRVLVHSDLKHVLEELGLAKLFTSEVHLSEVFSSILSSSAPPLGA
VVQSGLLELQEDGGNADDSFSFGDLFRRALPLVINHPFFYAIGNGKTLLL
SGHIVDI*

RE27547.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12244-PA 409 GF12244-PA 5..409 3..407 1463 69.9 Plus
Dana\GF12245-PA 394 GF12245-PA 37..390 43..406 352 26.9 Plus
Dana\GF12698-PA 390 GF12698-PA 28..388 37..405 311 25.5 Plus
Dana\GF11763-PA 376 GF11763-PA 16..359 39..392 295 24.7 Plus
Dana\GF11691-PA 374 GF11691-PA 10..371 38..405 286 26.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10766-PA 407 GG10766-PA 1..407 1..407 1949 91.6 Plus
Dere\GG23231-PA 404 GG23231-PA 11..401 10..404 369 27.4 Plus
Dere\GG10790-PA 424 GG10790-PA 48..409 39..405 369 29.4 Plus
Dere\GG23260-PA 390 GG23260-PA 1..388 1..405 314 24.3 Plus
Dere\GG23230-PA 372 GG23230-PA 25..370 47..405 306 25.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20377-PA 408 GH20377-PA 5..408 3..407 1107 56.8 Plus
Dgri\GH20376-PA 525 GH20376-PA 156..516 38..405 335 27.9 Plus
Dgri\GH19862-PA 382 GH19862-PA 18..374 38..400 326 26.7 Plus
Dgri\GH20378-PA 397 GH20378-PA 40..393 43..406 326 26.1 Plus
Dgri\GH21519-PA 384 GH21519-PA 22..382 37..405 314 25 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
Spn43Ad-PA 407 CG1859-PA 1..407 1..407 2049 100 Plus
Spn42Da-PL 379 CG9453-PL 16..376 39..404 361 28.5 Plus
Spn42Da-PK 379 CG9453-PK 16..376 39..404 361 28.5 Plus
Spn42Da-PH 379 CG9453-PH 16..376 39..404 361 28.5 Plus
Spn42Da-PG 379 CG9453-PG 16..376 39..404 361 29 Plus
Spn42Da-PF 411 CG9453-PF 48..408 39..404 361 28.5 Plus
Spn42Da-PE 411 CG9453-PE 48..408 39..404 361 28.5 Plus
Spn42Da-PD 411 CG9453-PD 48..408 39..404 361 29 Plus
Spn42Da-PA 392 CG9453-PA 16..371 39..400 357 28.6 Plus
Spn42Da-PB 424 CG9453-PB 48..403 39..400 357 28.6 Plus
Spn42De-PA 404 CG9460-PA 11..401 10..404 355 26 Plus
Spn42De-PB 386 CG9460-PB 8..383 28..404 350 25.9 Plus
Spn42Da-PJ 374 CG9453-PJ 16..359 39..392 349 28.4 Plus
Spn42Da-PI 406 CG9453-PI 48..391 39..392 349 28.4 Plus
Spn43Aa-PA 390 CG12172-PA 1..388 1..405 322 26.3 Plus
Spn43Ab-PB 393 CG1865-PB 2..389 9..406 318 24.8 Plus
Spn42Dd-PB 372 CG9456-PB 25..370 47..405 305 26.6 Plus
Spn28B-PB 378 CG6717-PB 33..375 55..406 303 24.4 Plus
Spn28B-PA 378 CG6717-PA 33..375 55..406 303 24.4 Plus
Spn42Dc-PB 403 CG9455-PB 30..375 52..402 280 24.4 Plus
Spn42Dc-PA 403 CG9455-PA 30..375 52..402 280 24.4 Plus
nec-PA 476 CG1857-PA 108..468 37..404 275 24.5 Plus
Spn55B-PA 374 CG10913-PA 10..371 38..405 266 25.1 Plus
Spn47C-PC 382 CG7722-PC 12..380 33..405 265 24.3 Plus
Spn47C-PB 382 CG7722-PB 12..380 33..405 265 24.3 Plus
Spn47C-PA 382 CG7722-PA 12..380 33..405 265 24.3 Plus
Spn38F-PB 370 CG9334-PB 10..367 32..406 253 24.4 Plus
Spn28F-PA 375 CG8137-PA 33..371 55..405 252 24.1 Plus
Spn38F-PA 372 CG9334-PA 10..369 32..406 251 24.3 Plus
Spn31A-PA 382 CG4804-PA 28..381 53..406 248 26.1 Plus
Spn42Db-PC 388 CG9454-PC 12..374 38..405 232 23.2 Plus
Spn53F-PB 379 CG10956-PB 38..376 55..404 222 22.1 Plus
Spn28Db-PB 377 CG33121-PB 22..369 38..405 216 23.8 Plus
Spn28Da-PB 384 CG31902-PB 33..371 55..406 215 23.6 Plus
Spn42Db-PD 286 CG9454-PD 12..282 38..318 172 22.1 Plus
Spn100A-PA 649 CG1342-PA 346..570 142..367 165 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20050-PA 416 GI20050-PA 4..416 2..407 1147 58.4 Plus
Dmoj\GI20049-PA 503 GI20049-PA 126..494 29..405 357 28.4 Plus
Dmoj\GI19487-PA 384 GI19487-PA 22..382 37..405 323 25.8 Plus
Dmoj\GI20051-PA 396 GI20051-PA 9..392 17..406 317 25.4 Plus
Dmoj\GI19810-PA 401 GI19810-PA 17..380 32..405 301 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10948-PA 420 GL10948-PA 5..420 3..407 1359 63.8 Plus
Dper\GL10949-PA 394 GL10949-PA 27..390 33..406 360 27.5 Plus
Dper\GL13962-PA 395 GL13962-PA 16..390 27..404 346 24.3 Plus
Dper\GL11126-PA 421 GL11126-PA 44..418 29..404 342 27.6 Plus
Dper\GL13961-PA 417 GL13961-PA 42..415 27..405 338 24.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15003-PA 420 GA15003-PA 5..420 3..407 1359 63.8 Plus
Dpse\GA15033-PA 394 GA15033-PA 27..390 33..406 360 27.5 Plus
Dpse\GA26906-PA 395 GA26906-PA 16..390 27..404 345 24.3 Plus
Dpse\GA24618-PA 407 GA24618-PA 29..404 27..404 338 26.9 Plus
Dpse\GA26905-PA 417 GA26905-PA 42..415 27..405 328 24.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20813-PA 407 GM20813-PA 1..407 1..407 2042 96.3 Plus
Dsec\GM19657-PA 407 GM19657-PA 1..407 1..407 2042 96.3 Plus
Dsec\GM20905-PA 321 GM20905-PA 31..318 115..404 323 27.9 Plus
Dsec\GM20933-PA 390 GM20933-PA 1..388 1..405 321 25.9 Plus
Dsec\GM20841-PA 347 GM20841-PA 6..332 74..405 313 28.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10270-PA 391 GD10270-PA 1..391 1..407 1922 91.9 Plus
Dsim\GD10292-PA 424 GD10292-PA 48..409 39..405 358 28.4 Plus
Dsim\GD10433-PA 598 GD10433-PA 245..595 55..404 342 26.6 Plus
Dsim\GD10459-PA 390 GD10459-PA 1..388 1..405 326 26.1 Plus
Dsim\GD10271-PA 393 GD10271-PA 25..389 32..406 317 25.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14939-PA 412 GJ14939-PA 5..412 3..407 1034 57.9 Plus
Dvir\GJ14940-PA 397 GJ14940-PA 1..393 2..406 330 25.2 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 19..370 39..400 327 28.3 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 25..385 37..405 320 25.8 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 8..372 27..406 309 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20886-PA 391 GK20886-PA 15..388 34..405 365 26.8 Plus
Dwil\GK20760-PA 433 GK20760-PA 53..400 39..392 321 25.6 Plus
Dwil\GK21527-PA 397 GK21527-PA 29..393 32..406 318 25.2 Plus
Dwil\GK20759-PA 401 GK20759-PA 39..389 39..400 317 25.9 Plus
Dwil\GK21526-PA 526 GK21526-PA 137..520 24..405 298 25.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24180-PA 407 GE24180-PA 1..407 1..407 1818 91.4 Plus
Dyak\GE24388-PA 392 GE24388-PA 16..377 39..405 384 29.3 Plus
Dyak\GE19082-PA 386 GE19082-PA 8..383 28..404 368 26.3 Plus
Dyak\GE24191-PA 393 GE24191-PA 25..389 32..406 321 25.3 Plus
Dyak\GE19110-PA 390 GE19110-PA 1..388 1..405 319 24.8 Plus