BDGP Sequence Production Resources |
Search the DGRC for RE27552
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 275 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13197-RA |
Protein status: | RE27552.pep: gold |
Preliminary Size: | 357 |
Sequenced Size: | 1279 |
Gene | Date | Evidence |
---|---|---|
CG13197 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13197 | 2002-03-21 | Blastp of sequenced clone |
CG13197 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13197 | 2008-04-29 | Release 5.5 accounting |
CG13197 | 2008-08-15 | Release 5.9 accounting |
CG13197 | 2008-12-18 | 5.12 accounting |
1279 bp (1279 high quality bases) assembled on 2002-03-21
GenBank Submission: AY094864
> RE27552.complete GAGGATTATTTCTTTGCAAAACATTGTCAACAATTTTGAAGAACTTCGAA ATTTTATTTTTAAATTTCGGTAAAAGGTTTGGCGAACAGACAAAATGGTC AAGGACATACCAGACAGATGGCTGAAGTACAAACCGATTGGAGATCGTGT TCCTGGCACTCGTTTCATAGCCTTTAAGGTGCCGCTGAATCAGCATGTCA ACGCCAAAGTGAAGGAGAATCTTCGGCTGGCGCCCGAATCCCTTCTGCAG ATCGTACCCGATATGGGTCTCATCATCGATTTGACCAACACGAATCGATA CTACCACCCAAGTGCCATAACCAACCACGATGTGCTCCACCAGAAGCTGA TGATCCCCGGAAAACAGACACCCTCGCATAAGCTAGCCCAAAGATTCTGT GCTTTCGTGACTGACTTCCTTGAAAGGAACGCGGATAATGACAAACTAAT TGGCGTCCATTGCACACATGGAGTAAATCGAACTGGATACCTGATCTGCT ACTTCATGATCTCCGTAATGAACATGTCCCCTGAGGAGGCGATACAAACC TTTTCTTTGGCCCGCGGCCATGAAATCGAACGCGACAATTACCTGAGCTC TCTAAAGACACTCCCGAATCGGGAGACCGTAACGAAGCTTGCTGCCACAG AGAGGAGATCATCCACAATAGATAATTGGCGTCAGCCAATTGATTACCAA AGCGAAAGAGATTTGCATCAGAAAAACAACCACAGACTGTCAAAAGTCTT GAAAACGAAATCCTATCAGGAACACGACGACTGTCGAAGACGCGACCGCT GGAACCAACATCCTTATGCCCGTAACCATAGACCGCATCCAGTCGAAGAA CAAAGAAGGATTCAAAGTAACCGATCTAGAGATGGATATCAGCAGGGCTC GAACCAACATCCTTATTCCCGTAACCATAGACCGCATCCAGTCGAAGAGC AATATAGGATTCAAAGTAACCGATCAGGAGGAGGCTATCAGCAGGGCTCG ATAAGCTATCAACAGGAACCTCATCAAAGGTATCAAAGGAACTGGGATTA TTCGAGAAGAAACTATAGCGAAAGAAACTACAGTGAAAGAAACTGGAGCG AAAGAAACTACAGCGATCAAAAGTAGCCGCTTCGTTCGATTTAATATTAT AGTTTTAAAAAATCCTTGAGTGTAAAAAATTTCCAACGGTGTGTTGATCA ATTTGTAAATTATTGCTAATTAGCTGCAACTACAGGTACGGCAATTAAAA TTCATTTGAGACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13197-RA | 1573 | CG13197-RA | 57..1316 | 5..1264 | 6300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7582227..7582755 | 735..1263 | 2645 | 100 | Plus |
chr2R | 21145070 | chr2R | 7579276..7579478 | 191..393 | 1015 | 100 | Plus |
chr2R | 21145070 | chr2R | 7581964..7582150 | 549..735 | 935 | 100 | Plus |
chr2R | 21145070 | chr2R | 7578611..7578723 | 5..117 | 565 | 100 | Plus |
chr2R | 21145070 | chr2R | 7581782..7581890 | 440..548 | 545 | 100 | Plus |
chr2R | 21145070 | chr2R | 7578808..7578886 | 115..193 | 395 | 100 | Plus |
chr2R | 21145070 | chr2R | 7582290..7582394 | 897..1001 | 360 | 89.5 | Plus |
chr2R | 21145070 | chr2R | 7582389..7582493 | 798..902 | 360 | 89.5 | Plus |
chr2R | 21145070 | chr2R | 7579808..7579856 | 392..440 | 245 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11694918..11695447 | 735..1264 | 2650 | 100 | Plus |
2R | 25286936 | 2R | 11691965..11692167 | 191..393 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 11694655..11694841 | 549..735 | 935 | 100 | Plus |
2R | 25286936 | 2R | 11691300..11691412 | 5..117 | 565 | 100 | Plus |
2R | 25286936 | 2R | 11694473..11694581 | 440..548 | 545 | 100 | Plus |
2R | 25286936 | 2R | 11691497..11691575 | 115..193 | 395 | 100 | Plus |
2R | 25286936 | 2R | 11694981..11695085 | 897..1001 | 360 | 89.5 | Plus |
2R | 25286936 | 2R | 11695080..11695184 | 798..902 | 360 | 89.5 | Plus |
2R | 25286936 | 2R | 11692497..11692545 | 392..440 | 245 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11696117..11696646 | 735..1264 | 2650 | 100 | Plus |
2R | 25260384 | 2R | 11693164..11693366 | 191..393 | 1015 | 100 | Plus |
2R | 25260384 | 2R | 11695854..11696040 | 549..735 | 935 | 100 | Plus |
2R | 25260384 | 2R | 11692499..11692611 | 5..117 | 565 | 100 | Plus |
2R | 25260384 | 2R | 11695672..11695780 | 440..548 | 545 | 100 | Plus |
2R | 25260384 | 2R | 11692696..11692774 | 115..193 | 395 | 100 | Plus |
2R | 25260384 | 2R | 11693696..11693744 | 392..440 | 245 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
FB | 1106 | FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). | 496..564 | 80..19 | 122 | 69.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7578607..7578723 | 1..117 | 98 | -> | Plus |
chr2R | 7578811..7578886 | 118..193 | 100 | -> | Plus |
chr2R | 7579279..7579478 | 194..393 | 100 | -> | Plus |
chr2R | 7579810..7579856 | 394..440 | 100 | -> | Plus |
chr2R | 7581783..7581890 | 441..548 | 100 | -> | Plus |
chr2R | 7581964..7582149 | 549..734 | 100 | -> | Plus |
chr2R | 7582227..7582755 | 735..1263 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 1..1032 | 95..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 1..1032 | 95..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 1..1032 | 95..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 1..1032 | 95..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 1..1032 | 95..1126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 2..1263 | 2..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 2..1263 | 2..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 12..1274 | 1..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 2..1263 | 2..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13197-RA | 12..1274 | 1..1263 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11691296..11691412 | 1..117 | 98 | -> | Plus |
2R | 11691500..11691575 | 118..193 | 100 | -> | Plus |
2R | 11691968..11692167 | 194..393 | 100 | -> | Plus |
2R | 11692499..11692545 | 394..440 | 100 | -> | Plus |
2R | 11694474..11694581 | 441..548 | 100 | -> | Plus |
2R | 11694655..11694840 | 549..734 | 100 | -> | Plus |
2R | 11694918..11695446 | 735..1263 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11691296..11691412 | 1..117 | 98 | -> | Plus |
2R | 11691500..11691575 | 118..193 | 100 | -> | Plus |
2R | 11691968..11692167 | 194..393 | 100 | -> | Plus |
2R | 11692499..11692545 | 394..440 | 100 | -> | Plus |
2R | 11694474..11694581 | 441..548 | 100 | -> | Plus |
2R | 11694655..11694840 | 549..734 | 100 | -> | Plus |
2R | 11694918..11695446 | 735..1263 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11691296..11691412 | 1..117 | 98 | -> | Plus |
2R | 11691500..11691575 | 118..193 | 100 | -> | Plus |
2R | 11691968..11692167 | 194..393 | 100 | -> | Plus |
2R | 11692499..11692545 | 394..440 | 100 | -> | Plus |
2R | 11694474..11694581 | 441..548 | 100 | -> | Plus |
2R | 11694655..11694840 | 549..734 | 100 | -> | Plus |
2R | 11694918..11695446 | 735..1263 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7582160..7582345 | 549..734 | 100 | -> | Plus |
arm_2R | 7578801..7578917 | 1..117 | 98 | -> | Plus |
arm_2R | 7579005..7579080 | 118..193 | 100 | -> | Plus |
arm_2R | 7579473..7579672 | 194..393 | 100 | -> | Plus |
arm_2R | 7580004..7580050 | 394..440 | 100 | -> | Plus |
arm_2R | 7581979..7582086 | 441..548 | 100 | -> | Plus |
arm_2R | 7582423..7582951 | 735..1263 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11696117..11696645 | 735..1263 | 100 | Plus | |
2R | 11692495..11692611 | 1..117 | 98 | -> | Plus |
2R | 11692699..11692774 | 118..193 | 100 | -> | Plus |
2R | 11693167..11693366 | 194..393 | 100 | -> | Plus |
2R | 11693698..11693744 | 394..440 | 100 | -> | Plus |
2R | 11695673..11695780 | 441..548 | 100 | -> | Plus |
2R | 11695854..11696039 | 549..734 | 100 | -> | Plus |
Translation from 94 to 1125
> RE27552.pep MVKDIPDRWLKYKPIGDRVPGTRFIAFKVPLNQHVNAKVKENLRLAPESL LQIVPDMGLIIDLTNTNRYYHPSAITNHDVLHQKLMIPGKQTPSHKLAQR FCAFVTDFLERNADNDKLIGVHCTHGVNRTGYLICYFMISVMNMSPEEAI QTFSLARGHEIERDNYLSSLKTLPNRETVTKLAATERRSSTIDNWRQPID YQSERDLHQKNNHRLSKVLKTKSYQEHDDCRRRDRWNQHPYARNHRPHPV EEQRRIQSNRSRDGYQQGSNQHPYSRNHRPHPVEEQYRIQSNRSGGGYQQ GSISYQQEPHQRYQRNWDYSRRNYSERNYSERNWSERNYSDQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11454-PA | 369 | GF11454-PA | 1..189 | 2..189 | 723 | 67.7 | Plus |
Dana\GF15987-PA | 672 | GF15987-PA | 21..189 | 5..170 | 257 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20215-PA | 302 | GG20215-PA | 1..294 | 1..342 | 927 | 56.9 | Plus |
Dere\GG19463-PA | 652 | GG19463-PA | 15..183 | 5..170 | 259 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22885-PA | 378 | GH22885-PA | 1..173 | 1..173 | 673 | 67.6 | Plus |
Dgri\GH11798-PA | 642 | GH11798-PA | 15..183 | 5..170 | 272 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13197-PB | 343 | CG13197-PB | 1..343 | 1..343 | 1864 | 100 | Plus |
CG13197-PA | 343 | CG13197-PA | 1..343 | 1..343 | 1864 | 100 | Plus |
mRNA-cap-PA | 649 | CG1810-PA | 15..183 | 5..170 | 242 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21271-PA | 388 | GI21271-PA | 1..207 | 1..206 | 701 | 62.8 | Plus |
Dmoj\GI15976-PA | 638 | GI15976-PA | 13..181 | 5..170 | 261 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10081-PA | 385 | GL10081-PA | 1..175 | 1..175 | 690 | 69.7 | Plus |
Dper\GL14931-PA | 599 | GL14931-PA | 15..183 | 5..170 | 266 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12112-PA | 385 | GA12112-PA | 1..175 | 1..175 | 691 | 70.3 | Plus |
Dpse\GA14791-PA | 655 | GA14791-PA | 15..183 | 5..170 | 266 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21302-PA | 351 | GM21302-PA | 1..229 | 1..228 | 1087 | 88.2 | Plus |
Dsec\GM17561-PA | 651 | GM17561-PA | 15..183 | 5..170 | 249 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10810-PA | 402 | GD10810-PA | 1..389 | 1..340 | 1405 | 71.7 | Plus |
Dsim\GD15855-PA | 651 | GD15855-PA | 15..183 | 5..170 | 249 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20873-PA | 401 | GJ20873-PA | 1..174 | 1..173 | 684 | 70.1 | Plus |
Dvir\GJ19096-PA | 637 | GJ19096-PA | 15..183 | 5..170 | 262 | 37.2 | Plus |
Translation from 94 to 1125
> RE27552.hyp MVKDIPDRWLKYKPIGDRVPGTRFIAFKVPLNQHVNAKVKENLRLAPESL LQIVPDMGLIIDLTNTNRYYHPSAITNHDVLHQKLMIPGKQTPSHKLAQR FCAFVTDFLERNADNDKLIGVHCTHGVNRTGYLICYFMISVMNMSPEEAI QTFSLARGHEIERDNYLSSLKTLPNRETVTKLAATERRSSTIDNWRQPID YQSERDLHQKNNHRLSKVLKTKSYQEHDDCRRRDRWNQHPYARNHRPHPV EEQRRIQSNRSRDGYQQGSNQHPYSRNHRPHPVEEQYRIQSNRSGGGYQQ GSISYQQEPHQRYQRNWDYSRRNYSERNYSERNWSERNYSDQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13197-PB | 343 | CG13197-PB | 1..343 | 1..343 | 1864 | 100 | Plus |
CG13197-PA | 343 | CG13197-PA | 1..343 | 1..343 | 1864 | 100 | Plus |
mRNA-cap-PA | 649 | CG1810-PA | 15..183 | 5..170 | 242 | 34.9 | Plus |