Clone RE27803 Report

Search the DGRC for RE27803

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:278
Well:3
Vector:pFlc-1
Associated Gene/TranscriptCG1360-RA
Protein status:RE27803.pep: gold
Preliminary Size:831
Sequenced Size:1765

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1360 2002-01-01 Sim4 clustering to Release 2
CG1360 2003-01-01 Sim4 clustering to Release 3
CG1360 2003-08-11 Blastp of sequenced clone
CG1360 2008-04-29 Release 5.5 accounting
CG1360 2008-08-15 Release 5.9 accounting
CG1360 2008-12-18 5.12 accounting

Clone Sequence Records

RE27803.complete Sequence

1765 bp (1765 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010261

> RE27803.complete
ACATCAATGGTTAAACCGGTTCACCAATCACACATATTTACCGGTTTAAT
TTCGGCCGACAGCTGTTTATTTTTCTTAAAGCGTTATCAAAAAGGGTTTT
TATTGATGTTATAATATGAATATCCAACCGTAATTTACCACGTATCACTT
TCAATATTTATCACGCATAGCTGTAAATTGTCAGCGTCCGCCATGAGTGA
CCAAAAAACAGTAAATTTGCTGTGGAACTGTGCCTCCAAGCTGACCGACC
AAACCCACACAGAACGGATCCTCAAATCCTATTACATAACCACCTGTAGG
AAGCTGGCCCGGCACAATGTCCAGTTGCCCGAGGAGAGCTTTGGACCCGC
ACGCATGTGCTCCCGCTGCGGGAACCAGTGGACAGGTGGCCGCTACCAGC
TCCACCTCCAGCCACAAGAACTGATGCAGAGTGCTAAGAACCGGAGACTG
ATCACCAAGCTGGAAGCCGTGAAGGGCAAGATGGCAAAGGGCGAGATGAA
CAGCGGGGCCAGGAAACGGGCCAAGTGGCTCAAGAAGCGTATGGCCAGTA
ACATGGCCGTGGACTGCGATGTTTGCCATCACAAGACAATGTTGGCTCTG
GAGAAGAGCCGAAAGCGCGCCAAAGTAAAAGCCACGGAGGAGACAATGGT
AGTCACACAACCTGCGCCAGCGGGCCAAAACAAAAAGAAGGCCAAAACGA
AGAAGTCTCAGGCGCCGAATAAAGATATCAATGCAGGCCTGAAAATGCAG
CAAAAAGCGCCTCAGCGACAGCAGCAGCCTTCGAAATCGCCAGCTCCATC
CAAAAACGCGTCCCAACCAGTCGGCATAGCTTCCCAAAACCCAAGTCAGA
CATCGAAGAAGAAAAAGAAGAAGCCTGCCCAGCCAGCGCCCACCGCACCA
AAAACGCAGTCCAAAACCCAGAAGCAGAACGTACTGCTGCAAATAGCTGC
CCAGCTGAAGTCGAACGCGTTTAAAGACGCCAGCAAAACGCAGCAGAATC
GCCTCCAAGCGTTCCTCAAGTAGCGGCCAGAAGACAGCTCCGGCCATGCA
TTAAAGTACAAAGAATGAAAATACTTGTTGTGGCACATAATTAAGCGTTA
GCACAATACTAGAATCAGACTCTTTGTGCCGCTTGATAAAGCCAGCCGAG
GTGGGAACCTGTTATCCACTCGCCCGGTCTTCTGGGTCGAATCACGCAAC
GGCTATGCACTTATCACTGCTGCCGGAGACAAGTCCAGGCGGGGGGACCC
AAGGTTGTCCAGATATTGCGCAGCCAACCTGGTCAGCATGCTTAATTTAT
TTCTCGGAGCGCAACGTTTAATTAAAATTGAGTTGTTTGCCTCAGCATCC
CATGAACGCGTCCTTCAAAACTGCTGCCCAAAAAGGGCAGCCGATCGGCT
CTGGACGGGCCGCTTTATCTGCCGCCGATTGTGAAGAGCACACGCACAGG
AGAAGGCTCCAGACTCGGCTTCGACCCATGGCCCTCTGCTTACCCCTTTC
TGTGCCGAAGACTCGGATTTCTCGGCAGCTGCGGCAACAACATCTGCCTG
CCACATTAGAAGATTTCTGGTTCCACAGACTAGCCACTCGGCACGAACAT
CTTGTATGCATGCACATGCAGAATGAGGAAAAAAAAGTTTACCTTAGGGA
AATAATGCCATTTTAAGGACAGTTACTTAATATTAAGAAAATGTGATATA
CAAACATAAATTGTAATAGAGAGTCTTGAAATTATAATACAAATATGTAC
AATTAAAAAAAAAAA

RE27803.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 1809 CG1360-RA 1..1755 1..1755 8775 100 Plus
scra-RC 2454 scra-RC 1..43 43..1 215 100 Minus
scra-RA 4442 scra-RA 1..43 43..1 215 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3475114..3476308 1754..555 5860 99.4 Minus
chr2R 21145070 chr2R 3476602..3476870 556..288 1345 100 Minus
chr2R 21145070 chr2R 3477270..3477441 173..1 815 99.4 Minus
chr2R 21145070 chr2R 3476931..3477045 287..173 575 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7587772..7588972 1755..555 6005 100 Minus
2R 25286936 2R 7589266..7589534 556..288 1345 100 Minus
2R 25286936 2R 7589934..7590106 173..1 865 100 Minus
2R 25286936 2R 7589595..7589709 287..173 575 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7588971..7590171 1755..555 6005 100 Minus
2R 25260384 2R 7590465..7590733 556..288 1345 100 Minus
2R 25260384 2R 7591133..7591305 173..1 865 100 Minus
2R 25260384 2R 7590794..7590908 287..173 575 100 Minus
Blast to na_te.dros performed 2019-03-16 22:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1490..1604 721..839 117 59.2 Plus

RE27803.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:51:55 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3476931..3477044 174..287 100 <- Minus
chr2R 3477270..3477441 1..173 99   Minus
chr2R 3475114..3476307 556..1754 99 <- Minus
chr2R 3476603..3476870 288..555 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:38 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..831 193..1023 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:52:23 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..831 193..1023 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:16:50 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..831 193..1023 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:12 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..831 193..1023 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:37 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..831 193..1023 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:00 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..1754 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:52:23 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..1754 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:16:50 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 4..1757 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:13 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..1754 1..1754 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:37 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 4..1757 1..1754 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:55 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7587773..7588971 556..1754 100 <- Minus
2R 7589267..7589534 288..555 100 <- Minus
2R 7589595..7589708 174..287 100 <- Minus
2R 7589934..7590106 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:55 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7587773..7588971 556..1754 100 <- Minus
2R 7589267..7589534 288..555 100 <- Minus
2R 7589595..7589708 174..287 100 <- Minus
2R 7589934..7590106 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:55 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7587773..7588971 556..1754 100 <- Minus
2R 7589267..7589534 288..555 100 <- Minus
2R 7589595..7589708 174..287 100 <- Minus
2R 7589934..7590106 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:16:50 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3475278..3476476 556..1754 100 <- Minus
arm_2R 3476772..3477039 288..555 100 <- Minus
arm_2R 3477100..3477213 174..287 100 <- Minus
arm_2R 3477439..3477611 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:52:23 Download gff for RE27803.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7588972..7590170 556..1754 100 <- Minus
2R 7590466..7590733 288..555 100 <- Minus
2R 7590794..7590907 174..287 100 <- Minus
2R 7591133..7591305 1..173 100   Minus

RE27803.pep Sequence

Translation from 192 to 1022

> RE27803.pep
MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF
GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG
EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE
TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP
APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ
IAAQLKSNAFKDASKTQQNRLQAFLK*

RE27803.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11707-PA 267 GF11707-PA 1..267 1..276 880 68.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10728-PA 278 GG10728-PA 1..278 1..276 1000 86.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20020-PA 283 GH20020-PA 1..283 1..276 694 54.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 276 CG1360-PA 1..276 1..276 1423 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19200-PA 266 GI19200-PA 3..266 4..276 682 54.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20102-PA 275 GL20102-PA 1..275 1..276 781 56.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12393-PA 275 GA12393-PA 1..275 1..276 781 56.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20775-PA 275 GM20775-PA 1..275 1..276 1210 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10236-PA 276 GD10236-PA 1..276 1..276 1156 92.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20267-PA 285 GJ20267-PA 1..285 1..276 668 52.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10710-PA 256 GK10710-PA 1..256 1..276 509 44.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23794-PA 276 GE23794-PA 1..276 1..276 1075 85.6 Plus

RE27803.hyp Sequence

Translation from 192 to 1022

> RE27803.hyp
MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF
GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG
EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE
TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP
APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ
IAAQLKSNAFKDASKTQQNRLQAFLK*

RE27803.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 276 CG1360-PA 1..276 1..276 1423 100 Plus