BDGP Sequence Production Resources |
Search the DGRC for RE27803
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 278 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1360-RA |
Protein status: | RE27803.pep: gold |
Preliminary Size: | 831 |
Sequenced Size: | 1765 |
Gene | Date | Evidence |
---|---|---|
CG1360 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1360 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1360 | 2003-08-11 | Blastp of sequenced clone |
CG1360 | 2008-04-29 | Release 5.5 accounting |
CG1360 | 2008-08-15 | Release 5.9 accounting |
CG1360 | 2008-12-18 | 5.12 accounting |
1765 bp (1765 high quality bases) assembled on 2003-08-11
GenBank Submission: BT010261
> RE27803.complete ACATCAATGGTTAAACCGGTTCACCAATCACACATATTTACCGGTTTAAT TTCGGCCGACAGCTGTTTATTTTTCTTAAAGCGTTATCAAAAAGGGTTTT TATTGATGTTATAATATGAATATCCAACCGTAATTTACCACGTATCACTT TCAATATTTATCACGCATAGCTGTAAATTGTCAGCGTCCGCCATGAGTGA CCAAAAAACAGTAAATTTGCTGTGGAACTGTGCCTCCAAGCTGACCGACC AAACCCACACAGAACGGATCCTCAAATCCTATTACATAACCACCTGTAGG AAGCTGGCCCGGCACAATGTCCAGTTGCCCGAGGAGAGCTTTGGACCCGC ACGCATGTGCTCCCGCTGCGGGAACCAGTGGACAGGTGGCCGCTACCAGC TCCACCTCCAGCCACAAGAACTGATGCAGAGTGCTAAGAACCGGAGACTG ATCACCAAGCTGGAAGCCGTGAAGGGCAAGATGGCAAAGGGCGAGATGAA CAGCGGGGCCAGGAAACGGGCCAAGTGGCTCAAGAAGCGTATGGCCAGTA ACATGGCCGTGGACTGCGATGTTTGCCATCACAAGACAATGTTGGCTCTG GAGAAGAGCCGAAAGCGCGCCAAAGTAAAAGCCACGGAGGAGACAATGGT AGTCACACAACCTGCGCCAGCGGGCCAAAACAAAAAGAAGGCCAAAACGA AGAAGTCTCAGGCGCCGAATAAAGATATCAATGCAGGCCTGAAAATGCAG CAAAAAGCGCCTCAGCGACAGCAGCAGCCTTCGAAATCGCCAGCTCCATC CAAAAACGCGTCCCAACCAGTCGGCATAGCTTCCCAAAACCCAAGTCAGA CATCGAAGAAGAAAAAGAAGAAGCCTGCCCAGCCAGCGCCCACCGCACCA AAAACGCAGTCCAAAACCCAGAAGCAGAACGTACTGCTGCAAATAGCTGC CCAGCTGAAGTCGAACGCGTTTAAAGACGCCAGCAAAACGCAGCAGAATC GCCTCCAAGCGTTCCTCAAGTAGCGGCCAGAAGACAGCTCCGGCCATGCA TTAAAGTACAAAGAATGAAAATACTTGTTGTGGCACATAATTAAGCGTTA GCACAATACTAGAATCAGACTCTTTGTGCCGCTTGATAAAGCCAGCCGAG GTGGGAACCTGTTATCCACTCGCCCGGTCTTCTGGGTCGAATCACGCAAC GGCTATGCACTTATCACTGCTGCCGGAGACAAGTCCAGGCGGGGGGACCC AAGGTTGTCCAGATATTGCGCAGCCAACCTGGTCAGCATGCTTAATTTAT TTCTCGGAGCGCAACGTTTAATTAAAATTGAGTTGTTTGCCTCAGCATCC CATGAACGCGTCCTTCAAAACTGCTGCCCAAAAAGGGCAGCCGATCGGCT CTGGACGGGCCGCTTTATCTGCCGCCGATTGTGAAGAGCACACGCACAGG AGAAGGCTCCAGACTCGGCTTCGACCCATGGCCCTCTGCTTACCCCTTTC TGTGCCGAAGACTCGGATTTCTCGGCAGCTGCGGCAACAACATCTGCCTG CCACATTAGAAGATTTCTGGTTCCACAGACTAGCCACTCGGCACGAACAT CTTGTATGCATGCACATGCAGAATGAGGAAAAAAAAGTTTACCTTAGGGA AATAATGCCATTTTAAGGACAGTTACTTAATATTAAGAAAATGTGATATA CAAACATAAATTGTAATAGAGAGTCTTGAAATTATAATACAAATATGTAC AATTAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3475114..3476308 | 1754..555 | 5860 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 3476602..3476870 | 556..288 | 1345 | 100 | Minus |
chr2R | 21145070 | chr2R | 3477270..3477441 | 173..1 | 815 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 3476931..3477045 | 287..173 | 575 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7587772..7588972 | 1755..555 | 6005 | 100 | Minus |
2R | 25286936 | 2R | 7589266..7589534 | 556..288 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 7589934..7590106 | 173..1 | 865 | 100 | Minus |
2R | 25286936 | 2R | 7589595..7589709 | 287..173 | 575 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7588971..7590171 | 1755..555 | 6005 | 100 | Minus |
2R | 25260384 | 2R | 7590465..7590733 | 556..288 | 1345 | 100 | Minus |
2R | 25260384 | 2R | 7591133..7591305 | 173..1 | 865 | 100 | Minus |
2R | 25260384 | 2R | 7590794..7590908 | 287..173 | 575 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1490..1604 | 721..839 | 117 | 59.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3476931..3477044 | 174..287 | 100 | <- | Minus |
chr2R | 3477270..3477441 | 1..173 | 99 | Minus | |
chr2R | 3475114..3476307 | 556..1754 | 99 | <- | Minus |
chr2R | 3476603..3476870 | 288..555 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..831 | 193..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..831 | 193..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..831 | 193..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..831 | 193..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..831 | 193..1023 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..1754 | 1..1754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..1754 | 1..1754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 4..1757 | 1..1754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 1..1754 | 1..1754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1360-RA | 4..1757 | 1..1754 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7587773..7588971 | 556..1754 | 100 | <- | Minus |
2R | 7589267..7589534 | 288..555 | 100 | <- | Minus |
2R | 7589595..7589708 | 174..287 | 100 | <- | Minus |
2R | 7589934..7590106 | 1..173 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7587773..7588971 | 556..1754 | 100 | <- | Minus |
2R | 7589267..7589534 | 288..555 | 100 | <- | Minus |
2R | 7589595..7589708 | 174..287 | 100 | <- | Minus |
2R | 7589934..7590106 | 1..173 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7587773..7588971 | 556..1754 | 100 | <- | Minus |
2R | 7589267..7589534 | 288..555 | 100 | <- | Minus |
2R | 7589595..7589708 | 174..287 | 100 | <- | Minus |
2R | 7589934..7590106 | 1..173 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3475278..3476476 | 556..1754 | 100 | <- | Minus |
arm_2R | 3476772..3477039 | 288..555 | 100 | <- | Minus |
arm_2R | 3477100..3477213 | 174..287 | 100 | <- | Minus |
arm_2R | 3477439..3477611 | 1..173 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7588972..7590170 | 556..1754 | 100 | <- | Minus |
2R | 7590466..7590733 | 288..555 | 100 | <- | Minus |
2R | 7590794..7590907 | 174..287 | 100 | <- | Minus |
2R | 7591133..7591305 | 1..173 | 100 | Minus |
Translation from 192 to 1022
> RE27803.pep MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ IAAQLKSNAFKDASKTQQNRLQAFLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11707-PA | 267 | GF11707-PA | 1..267 | 1..276 | 880 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10728-PA | 278 | GG10728-PA | 1..278 | 1..276 | 1000 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20020-PA | 283 | GH20020-PA | 1..283 | 1..276 | 694 | 54.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1360-PA | 276 | CG1360-PA | 1..276 | 1..276 | 1423 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19200-PA | 266 | GI19200-PA | 3..266 | 4..276 | 682 | 54.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20102-PA | 275 | GL20102-PA | 1..275 | 1..276 | 781 | 56.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12393-PA | 275 | GA12393-PA | 1..275 | 1..276 | 781 | 56.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20775-PA | 275 | GM20775-PA | 1..275 | 1..276 | 1210 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10236-PA | 276 | GD10236-PA | 1..276 | 1..276 | 1156 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20267-PA | 285 | GJ20267-PA | 1..285 | 1..276 | 668 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10710-PA | 256 | GK10710-PA | 1..256 | 1..276 | 509 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23794-PA | 276 | GE23794-PA | 1..276 | 1..276 | 1075 | 85.6 | Plus |
Translation from 192 to 1022
> RE27803.hyp MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ IAAQLKSNAFKDASKTQQNRLQAFLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1360-PA | 276 | CG1360-PA | 1..276 | 1..276 | 1423 | 100 | Plus |