Clone RE27850 Report

Search the DGRC for RE27850

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:278
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG43394-RA
Protein status:RE27850.pep: gold
Sequenced Size:2690

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8506 2002-01-01 Sim4 clustering to Release 2
CG31607 2003-01-01 Sim4 clustering to Release 3
CG31607 2003-02-07 Blastp of sequenced clone
CG31607 2008-04-29 Release 5.5 accounting
CG31607 2008-08-15 Release 5.9 accounting
CG31607 2008-12-18 5.12 accounting

Clone Sequence Records

RE27850.complete Sequence

2690 bp (2690 high quality bases) assembled on 2003-02-07

GenBank Submission: BT003515

> RE27850.complete
AGTTTCATTTGAGACGTTGACGCGATCGCCAGCAAAAAGCAAAGGCAGCT
GCCAAAATCGCAGTGAGCTATAAGCTACAACTACAAGTCGCGCATGAGAA
ATATATTTAAACGGGTTAATCCAATACACGGCCGCAAATCGAACGCTCTT
AATTTTGTAGATTTTTTGTTTCGGTCGCTTGCAATTTGCTGAGCGTGAAA
TATTGCAGCAAGTGAATATTTCTGAAATATCAGTGCGCTCGTGTTTATTG
TTGTTGTCGTGATTTGCATAATCTGCAAGTTAATAAACAATGCAAAGAAG
TGGGCAAAACTCATAAATAAAGTGTACCGCTTAAGGTGTAATTAAAATTC
ATTGAGATTTTTTCGTGCGCACAGCAAGGAGAAAACAAGTTTGTTGCCTA
AGTTATTTGTTTTGAATTTCGAAAATTCACAAAACATTTAATAATAAATA
TTAAAAAAAAAAACAAAAACAAGCTAGAAAGCAAAATTGAGTGCAGACCA
CGTCGACAAGAAGTTTCACAAAAGACTTTTATGCTGACAACTGAGGATAG
CTAAGATCATATATCAATCGAAATGATTTTGAGAACGCACCTCTGGCTGG
GAGTGCTCCTGGCGGCGTTGCTACTAAATACCGTAGTTTCTGGAGAGGAT
GAAGACTATGGCGGCGAAATGATTGGCTCTAGCCTCGGAGGCAACGATGA
GATCTACGATCCTGCTCAACTGGAGGCCGAGGTAGAAAAAGAGATGGAGC
AGCATCGCAATAGCTTGGAGGAGGACCAAACCGAAAGTTCTCAAGTCATG
GAGCTGGAAGTGAGCACCATGAGGCCCATGGAGAGCAGAATGAACACCAT
GGCTCCGTATTCCGGGGAAAACTCATCCGCCGAAATGATAGACGATGCTT
CCACCCAAAAACGTGTATCAAAGGTGGACAAACCCGCGCGAGATTATTAT
TACGAAGATGCGCCCGAGGATGAGATGGTTGCCAGCACAACAGCAAAAGT
GGCTACCACCATGATACCGGAATATGTGCGTCAGGCCAAGGCAGAAAGAT
TCCCCCAGCGAGATCAGGAGCATACTTCAACTGACTACATCGAGGAGGAT
GCCACCAAGTCGGTGGATGAGGAGCCTCCAGCTGATCAGTTCTACCGAGT
TGAGCAACACGAACCCATTCCCCAGGCTCAAGTCCAACAGCTGCCCAGTC
GGGACAAACCCAAACCGTTTGAGTACTCCTCTGAGGATGATTACTACGAT
GAGCATGCAGAAGCTAAGACGACCACAACAAGCACTTCCACCACACAGGC
ACCCTTGCCCATACTAAGGGCTCGTTTCGGTGGATTTCCCTGGGCCACCA
CCCAGGCACCCAGTCCTCCTACCACCAGTTCAACAAGCTCAACGACAACT
ACATCGACGACGACGACAACGACCACCACATCAACCACAACAACTCCCAG
TCCTAGAAAACAGCCCAAGCACATCCAAGTGACCGGTGGCTTAAAGCCGG
AATTGTTGCCCGCGGATCAGCTGCGCAACTACATCAAGGATGTGTACATT
CGCATGCCTCTGGCTGTGATTGTGGATCCTTCTTCCGCATCCTTGGAGCA
GGCAAAGCGTCTCTATATCGATGCTTTGCAGGACAAGAACATCGATATCA
AAATAGTTTTGGTAACACTTAATGCAGCCGGTGCTCCTTCTGCCTTCAGC
TTCAACAACACCCGGGAGTTCATCGCTGGCTTGAATAGCACCAAGGAGCA
CGAGGGCGGCAACTCGTTTGTGGGCGTTTTGCATGCCGCCGAGCTGGTTC
CCTACGACAGTGCTGTTTTCATCTCGACCGCAGTCATCCCACCACACACG
GAACTGGTCCAAGATGCGGCCATTACTCTTCTAAAGAAGAGGATCAGGTT
ATTCCTTTTGTGGTACGGAGAGCGATCGGGCAGCGAAAACGAAACGGAGG
ACGCAGTGGGCGGCATTCTGGGTGAGGTGGCCATCCGATCCGGTGGCGAG
ATCATCCACATTGTGAGCACCGAGCACGGACAGCATATAGCTGGCAATAC
GCTCACCCTAGTAGCGGACGCGTATCAAGGTAGTCAAGAGCTGGATCTGC
CAGTTGACACGACGTTGTCCAGTCTTCATGTGCGAATCGATGCGAATATG
AGACGGGCCACGATGGAGACGCCGAATGGTGGTTAGTGATTCTCGTAAAG
CGAGTTACCAAGCACCGACTCCGTTTGCTCTATCGCACTTACTAACGCAG
GGTTGTATTTTAGTGTTTAGCGACTTAAATGTGTAGGAGTCTGTGTGCCA
AACCTACGTAGATTCTAAGTCTAATCCTTTTGATAATGGCACAAGCTTCC
AATAACTTCCCAGATGTATTGACAACTGTACTACTGTGTAATTTATGTCC
TTAGCTCGTAAGATCATTGACTAACACCCGACCAATCGCTGCTCTCTAAT
CCCAAGTCAGCTATGCTGATCCTTGTATATAGCCGATGTCCCAACGCTTT
CCTTAACCAAAACGCTAGTATAATAATAATGCTCAACAAAACCACACTTG
ACACTAAACTGTAGTACAAAGGAAATTTTCTATATACATATATGTTTACT
GTTTTACAGTTATAAAGTAATAAATGTTTTAGCTTTTTAAGGGTACACAA
ATAAAACGAAAACGATAAAAATCTAAAAAAAAAAAAAAAA

RE27850.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31607-RA 2675 CG31607-RA 1..2673 1..2673 13350 99.9 Plus
CG31900.b 3059 CG31900.b 30..1688 523..2181 8280 99.9 Plus
CG31900.a 2108 CG31900.a 1..737 1445..2181 3685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8151603..8152762 523..1682 5755 99.7 Plus
chr2L 23010047 chr2L 8153999..8154621 2051..2673 3115 100 Plus
chr2L 23010047 chr2L 8147965..8148485 1..524 2525 99.2 Plus
chr2L 23010047 chr2L 8152852..8153070 1680..1898 1095 100 Plus
chr2L 23010047 chr2L 8153176..8153329 1898..2051 770 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8152585..8153744 523..1682 5785 99.9 Plus
2L 23513712 2L 8154981..8155603 2051..2673 3115 100 Plus
2L 23513712 2L 8148950..8149473 1..524 2620 100 Plus
2L 23513712 2L 8153834..8154052 1680..1898 1095 100 Plus
2L 23513712 2L 8154158..8154311 1898..2051 770 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8152585..8153744 523..1682 5785 99.9 Plus
2L 23513712 2L 8154981..8155603 2051..2673 3115 100 Plus
2L 23513712 2L 8148950..8149473 1..524 2620 100 Plus
2L 23513712 2L 8153834..8154052 1680..1898 1095 100 Plus
2L 23513712 2L 8154158..8154311 1898..2051 770 100 Plus
Blast to na_te.dros performed 2019-03-16 12:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Helena 691 Dvir\Helena DV26847 691bp Derived from U26847 (Rel. 63, Last updated, Version 2). 638..690 434..486 157 77.4 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6488..6552 422..485 124 69.7 Plus

RE27850.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:00:26 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8147965..8148485 1..524 99 -> Plus
chr2L 8151605..8152760 525..1680 99 -> Plus
chr2L 8152853..8153070 1681..1898 100 -> Plus
chr2L 8153177..8153329 1899..2051 100 -> Plus
chr2L 8154000..8154621 2052..2674 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:40 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 1..1614 573..2186 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:27 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 1..1614 573..2186 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:42:25 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG43394-RD 1..1614 573..2186 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:32 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 1..1614 573..2186 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:46 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG43394-RD 1..1614 573..2186 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:07:52 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 1..2677 1..2674 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:26 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 1..2673 1..2673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:42:25 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG43394-RA 3..2675 1..2673 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:32 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG31607-RA 1..2677 1..2674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:46 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
CG43394-RA 3..2675 1..2673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:26 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8148950..8149473 1..524 100 -> Plus
2L 8152587..8153742 525..1680 99 -> Plus
2L 8153835..8154052 1681..1898 100 -> Plus
2L 8154159..8154311 1899..2051 100 -> Plus
2L 8154982..8155603 2052..2674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:26 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8148950..8149473 1..524 100 -> Plus
2L 8152587..8153742 525..1680 99 -> Plus
2L 8153835..8154052 1681..1898 100 -> Plus
2L 8154159..8154311 1899..2051 100 -> Plus
2L 8154982..8155603 2052..2674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:26 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8148950..8149473 1..524 100 -> Plus
2L 8152587..8153742 525..1680 99 -> Plus
2L 8153835..8154052 1681..1898 100 -> Plus
2L 8154159..8154311 1899..2051 100 -> Plus
2L 8154982..8155603 2052..2674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:42:25 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8148950..8149473 1..524 100 -> Plus
arm_2L 8152587..8153742 525..1680 99 -> Plus
arm_2L 8153835..8154052 1681..1898 100 -> Plus
arm_2L 8154159..8154311 1899..2051 100 -> Plus
arm_2L 8154982..8155603 2052..2674 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:25 Download gff for RE27850.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8148950..8149473 1..524 100 -> Plus
2L 8152587..8153742 525..1680 99 -> Plus
2L 8153835..8154052 1681..1898 100 -> Plus
2L 8154159..8154311 1899..2051 100 -> Plus
2L 8154982..8155603 2052..2674 99   Plus

RE27850.hyp Sequence

Translation from 572 to 2185

> RE27850.hyp
MILRTHLWLGVLLAALLLNTVVSGEDEDYGGEMIGSSLGGNDEIYDPAQL
EAEVEKEMEQHRNSLEEDQTESSQVMELEVSTMRPMESRMNTMAPYSGEN
SSAEMIDDASTQKRVSKVDKPARDYYYEDAPEDEMVASTTAKVATTMIPE
YVRQAKAERFPQRDQEHTSTDYIEEDATKSVDEEPPADQFYRVEQHEPIP
QAQVQQLPSRDKPKPFEYSSEDDYYDEHAEAKTTTTSTSTTQAPLPILRA
RFGGFPWATTQAPSPPTTSSTSSTTTTSTTTTTTTTSTTTTPSPRKQPKH
IQVTGGLKPELLPADQLRNYIKDVYIRMPLAVIVDPSSASLEQAKRLYID
ALQDKNIDIKIVLVTLNAAGAPSAFSFNNTREFIAGLNSTKEHEGGNSFV
GVLHAAELVPYDSAVFISTAVIPPHTELVQDAAITLLKKRIRLFLLWYGE
RSGSENETEDAVGGILGEVAIRSGGEIIHIVSTEHGQHIAGNTLTLVADA
YQGSQELDLPVDTTLSSLHVRIDANMRRATMETPNGG*

RE27850.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG43394-PA 537 CG31607-PA 1..537 1..537 2741 100 Plus
CG43394-PD 537 CG43394-PD 1..537 1..537 2741 100 Plus
CG43394-PC 948 CG43394-PC 1..536 1..536 2735 100 Plus
CG43394-PB 948 CG43394-PB 1..536 1..536 2735 100 Plus
CG43394-PE 525 CG43394-PE 1..499 1..499 2522 99 Plus

RE27850.pep Sequence

Translation from 572 to 2185

> RE27850.pep
MILRTHLWLGVLLAALLLNTVVSGEDEDYGGEMIGSSLGGNDEIYDPAQL
EAEVEKEMEQHRNSLEEDQTESSQVMELEVSTMRPMESRMNTMAPYSGEN
SSAEMIDDASTQKRVSKVDKPARDYYYEDAPEDEMVASTTAKVATTMIPE
YVRQAKAERFPQRDQEHTSTDYIEEDATKSVDEEPPADQFYRVEQHEPIP
QAQVQQLPSRDKPKPFEYSSEDDYYDEHAEAKTTTTSTSTTQAPLPILRA
RFGGFPWATTQAPSPPTTSSTSSTTTTSTTTTTTTTSTTTTPSPRKQPKH
IQVTGGLKPELLPADQLRNYIKDVYIRMPLAVIVDPSSASLEQAKRLYID
ALQDKNIDIKIVLVTLNAAGAPSAFSFNNTREFIAGLNSTKEHEGGNSFV
GVLHAAELVPYDSAVFISTAVIPPHTELVQDAAITLLKKRIRLFLLWYGE
RSGSENETEDAVGGILGEVAIRSGGEIIHIVSTEHGQHIAGNTLTLVADA
YQGSQELDLPVDTTLSSLHVRIDANMRRATMETPNGG*

RE27850.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15503-PA 947 GF15503-PA 1..534 1..536 1995 74.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10517-PA 534 GG10517-PA 1..534 1..537 2408 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13781-PA 1013 GH13781-PA 1..597 1..536 1419 56.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG43394-PA 537 CG31607-PA 1..537 1..537 2741 100 Plus
CG43394-PD 537 CG43394-PD 1..537 1..537 2741 100 Plus
CG43394-PC 948 CG43394-PC 1..536 1..536 2735 100 Plus
CG43394-PB 948 CG43394-PB 1..536 1..536 2735 100 Plus
CG43394-PE 525 CG43394-PE 1..499 1..499 2522 99 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17185-PA 1001 GI17185-PA 1..583 1..536 1446 58.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18801-PA 966 GL18801-PA 31..552 26..536 1802 74.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25804-PA 965 GA25804-PA 31..551 26..536 1775 74.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16775-PA 536 GM16775-PA 1..536 1..537 2760 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23507-PA 510 GD23507-PA 1..491 1..492 2534 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22193-PA 990 GJ22193-PA 23..572 22..536 1495 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23929-PA 959 GK23929-PA 50..550 39..536 1587 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18737-PA 535 GE18737-PA 1..535 1..537 2740 95.9 Plus