BDGP Sequence Production Resources |
Search the DGRC for RE27850
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 278 |
Well: | 50 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG43394-RA |
Protein status: | RE27850.pep: gold |
Sequenced Size: | 2690 |
Gene | Date | Evidence |
---|---|---|
CG8506 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31607 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31607 | 2003-02-07 | Blastp of sequenced clone |
CG31607 | 2008-04-29 | Release 5.5 accounting |
CG31607 | 2008-08-15 | Release 5.9 accounting |
CG31607 | 2008-12-18 | 5.12 accounting |
2690 bp (2690 high quality bases) assembled on 2003-02-07
GenBank Submission: BT003515
> RE27850.complete AGTTTCATTTGAGACGTTGACGCGATCGCCAGCAAAAAGCAAAGGCAGCT GCCAAAATCGCAGTGAGCTATAAGCTACAACTACAAGTCGCGCATGAGAA ATATATTTAAACGGGTTAATCCAATACACGGCCGCAAATCGAACGCTCTT AATTTTGTAGATTTTTTGTTTCGGTCGCTTGCAATTTGCTGAGCGTGAAA TATTGCAGCAAGTGAATATTTCTGAAATATCAGTGCGCTCGTGTTTATTG TTGTTGTCGTGATTTGCATAATCTGCAAGTTAATAAACAATGCAAAGAAG TGGGCAAAACTCATAAATAAAGTGTACCGCTTAAGGTGTAATTAAAATTC ATTGAGATTTTTTCGTGCGCACAGCAAGGAGAAAACAAGTTTGTTGCCTA AGTTATTTGTTTTGAATTTCGAAAATTCACAAAACATTTAATAATAAATA TTAAAAAAAAAAACAAAAACAAGCTAGAAAGCAAAATTGAGTGCAGACCA CGTCGACAAGAAGTTTCACAAAAGACTTTTATGCTGACAACTGAGGATAG CTAAGATCATATATCAATCGAAATGATTTTGAGAACGCACCTCTGGCTGG GAGTGCTCCTGGCGGCGTTGCTACTAAATACCGTAGTTTCTGGAGAGGAT GAAGACTATGGCGGCGAAATGATTGGCTCTAGCCTCGGAGGCAACGATGA GATCTACGATCCTGCTCAACTGGAGGCCGAGGTAGAAAAAGAGATGGAGC AGCATCGCAATAGCTTGGAGGAGGACCAAACCGAAAGTTCTCAAGTCATG GAGCTGGAAGTGAGCACCATGAGGCCCATGGAGAGCAGAATGAACACCAT GGCTCCGTATTCCGGGGAAAACTCATCCGCCGAAATGATAGACGATGCTT CCACCCAAAAACGTGTATCAAAGGTGGACAAACCCGCGCGAGATTATTAT TACGAAGATGCGCCCGAGGATGAGATGGTTGCCAGCACAACAGCAAAAGT GGCTACCACCATGATACCGGAATATGTGCGTCAGGCCAAGGCAGAAAGAT TCCCCCAGCGAGATCAGGAGCATACTTCAACTGACTACATCGAGGAGGAT GCCACCAAGTCGGTGGATGAGGAGCCTCCAGCTGATCAGTTCTACCGAGT TGAGCAACACGAACCCATTCCCCAGGCTCAAGTCCAACAGCTGCCCAGTC GGGACAAACCCAAACCGTTTGAGTACTCCTCTGAGGATGATTACTACGAT GAGCATGCAGAAGCTAAGACGACCACAACAAGCACTTCCACCACACAGGC ACCCTTGCCCATACTAAGGGCTCGTTTCGGTGGATTTCCCTGGGCCACCA CCCAGGCACCCAGTCCTCCTACCACCAGTTCAACAAGCTCAACGACAACT ACATCGACGACGACGACAACGACCACCACATCAACCACAACAACTCCCAG TCCTAGAAAACAGCCCAAGCACATCCAAGTGACCGGTGGCTTAAAGCCGG AATTGTTGCCCGCGGATCAGCTGCGCAACTACATCAAGGATGTGTACATT CGCATGCCTCTGGCTGTGATTGTGGATCCTTCTTCCGCATCCTTGGAGCA GGCAAAGCGTCTCTATATCGATGCTTTGCAGGACAAGAACATCGATATCA AAATAGTTTTGGTAACACTTAATGCAGCCGGTGCTCCTTCTGCCTTCAGC TTCAACAACACCCGGGAGTTCATCGCTGGCTTGAATAGCACCAAGGAGCA CGAGGGCGGCAACTCGTTTGTGGGCGTTTTGCATGCCGCCGAGCTGGTTC CCTACGACAGTGCTGTTTTCATCTCGACCGCAGTCATCCCACCACACACG GAACTGGTCCAAGATGCGGCCATTACTCTTCTAAAGAAGAGGATCAGGTT ATTCCTTTTGTGGTACGGAGAGCGATCGGGCAGCGAAAACGAAACGGAGG ACGCAGTGGGCGGCATTCTGGGTGAGGTGGCCATCCGATCCGGTGGCGAG ATCATCCACATTGTGAGCACCGAGCACGGACAGCATATAGCTGGCAATAC GCTCACCCTAGTAGCGGACGCGTATCAAGGTAGTCAAGAGCTGGATCTGC CAGTTGACACGACGTTGTCCAGTCTTCATGTGCGAATCGATGCGAATATG AGACGGGCCACGATGGAGACGCCGAATGGTGGTTAGTGATTCTCGTAAAG CGAGTTACCAAGCACCGACTCCGTTTGCTCTATCGCACTTACTAACGCAG GGTTGTATTTTAGTGTTTAGCGACTTAAATGTGTAGGAGTCTGTGTGCCA AACCTACGTAGATTCTAAGTCTAATCCTTTTGATAATGGCACAAGCTTCC AATAACTTCCCAGATGTATTGACAACTGTACTACTGTGTAATTTATGTCC TTAGCTCGTAAGATCATTGACTAACACCCGACCAATCGCTGCTCTCTAAT CCCAAGTCAGCTATGCTGATCCTTGTATATAGCCGATGTCCCAACGCTTT CCTTAACCAAAACGCTAGTATAATAATAATGCTCAACAAAACCACACTTG ACACTAAACTGTAGTACAAAGGAAATTTTCTATATACATATATGTTTACT GTTTTACAGTTATAAAGTAATAAATGTTTTAGCTTTTTAAGGGTACACAA ATAAAACGAAAACGATAAAAATCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8151603..8152762 | 523..1682 | 5755 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 8153999..8154621 | 2051..2673 | 3115 | 100 | Plus |
chr2L | 23010047 | chr2L | 8147965..8148485 | 1..524 | 2525 | 99.2 | Plus |
chr2L | 23010047 | chr2L | 8152852..8153070 | 1680..1898 | 1095 | 100 | Plus |
chr2L | 23010047 | chr2L | 8153176..8153329 | 1898..2051 | 770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8152585..8153744 | 523..1682 | 5785 | 99.9 | Plus |
2L | 23513712 | 2L | 8154981..8155603 | 2051..2673 | 3115 | 100 | Plus |
2L | 23513712 | 2L | 8148950..8149473 | 1..524 | 2620 | 100 | Plus |
2L | 23513712 | 2L | 8153834..8154052 | 1680..1898 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 8154158..8154311 | 1898..2051 | 770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8152585..8153744 | 523..1682 | 5785 | 99.9 | Plus |
2L | 23513712 | 2L | 8154981..8155603 | 2051..2673 | 3115 | 100 | Plus |
2L | 23513712 | 2L | 8148950..8149473 | 1..524 | 2620 | 100 | Plus |
2L | 23513712 | 2L | 8153834..8154052 | 1680..1898 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 8154158..8154311 | 1898..2051 | 770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Helena | 691 | Dvir\Helena DV26847 691bp Derived from U26847 (Rel. 63, Last updated, Version 2). | 638..690 | 434..486 | 157 | 77.4 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6488..6552 | 422..485 | 124 | 69.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8147965..8148485 | 1..524 | 99 | -> | Plus |
chr2L | 8151605..8152760 | 525..1680 | 99 | -> | Plus |
chr2L | 8152853..8153070 | 1681..1898 | 100 | -> | Plus |
chr2L | 8153177..8153329 | 1899..2051 | 100 | -> | Plus |
chr2L | 8154000..8154621 | 2052..2674 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31607-RA | 1..1614 | 573..2186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31607-RA | 1..1614 | 573..2186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43394-RD | 1..1614 | 573..2186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31607-RA | 1..1614 | 573..2186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43394-RD | 1..1614 | 573..2186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31607-RA | 1..2677 | 1..2674 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31607-RA | 1..2673 | 1..2673 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43394-RA | 3..2675 | 1..2673 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31607-RA | 1..2677 | 1..2674 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43394-RA | 3..2675 | 1..2673 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8148950..8149473 | 1..524 | 100 | -> | Plus |
2L | 8152587..8153742 | 525..1680 | 99 | -> | Plus |
2L | 8153835..8154052 | 1681..1898 | 100 | -> | Plus |
2L | 8154159..8154311 | 1899..2051 | 100 | -> | Plus |
2L | 8154982..8155603 | 2052..2674 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8148950..8149473 | 1..524 | 100 | -> | Plus |
2L | 8152587..8153742 | 525..1680 | 99 | -> | Plus |
2L | 8153835..8154052 | 1681..1898 | 100 | -> | Plus |
2L | 8154159..8154311 | 1899..2051 | 100 | -> | Plus |
2L | 8154982..8155603 | 2052..2674 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8148950..8149473 | 1..524 | 100 | -> | Plus |
2L | 8152587..8153742 | 525..1680 | 99 | -> | Plus |
2L | 8153835..8154052 | 1681..1898 | 100 | -> | Plus |
2L | 8154159..8154311 | 1899..2051 | 100 | -> | Plus |
2L | 8154982..8155603 | 2052..2674 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8148950..8149473 | 1..524 | 100 | -> | Plus |
arm_2L | 8152587..8153742 | 525..1680 | 99 | -> | Plus |
arm_2L | 8153835..8154052 | 1681..1898 | 100 | -> | Plus |
arm_2L | 8154159..8154311 | 1899..2051 | 100 | -> | Plus |
arm_2L | 8154982..8155603 | 2052..2674 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8148950..8149473 | 1..524 | 100 | -> | Plus |
2L | 8152587..8153742 | 525..1680 | 99 | -> | Plus |
2L | 8153835..8154052 | 1681..1898 | 100 | -> | Plus |
2L | 8154159..8154311 | 1899..2051 | 100 | -> | Plus |
2L | 8154982..8155603 | 2052..2674 | 99 | Plus |
Translation from 572 to 2185
> RE27850.hyp MILRTHLWLGVLLAALLLNTVVSGEDEDYGGEMIGSSLGGNDEIYDPAQL EAEVEKEMEQHRNSLEEDQTESSQVMELEVSTMRPMESRMNTMAPYSGEN SSAEMIDDASTQKRVSKVDKPARDYYYEDAPEDEMVASTTAKVATTMIPE YVRQAKAERFPQRDQEHTSTDYIEEDATKSVDEEPPADQFYRVEQHEPIP QAQVQQLPSRDKPKPFEYSSEDDYYDEHAEAKTTTTSTSTTQAPLPILRA RFGGFPWATTQAPSPPTTSSTSSTTTTSTTTTTTTTSTTTTPSPRKQPKH IQVTGGLKPELLPADQLRNYIKDVYIRMPLAVIVDPSSASLEQAKRLYID ALQDKNIDIKIVLVTLNAAGAPSAFSFNNTREFIAGLNSTKEHEGGNSFV GVLHAAELVPYDSAVFISTAVIPPHTELVQDAAITLLKKRIRLFLLWYGE RSGSENETEDAVGGILGEVAIRSGGEIIHIVSTEHGQHIAGNTLTLVADA YQGSQELDLPVDTTLSSLHVRIDANMRRATMETPNGG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43394-PA | 537 | CG31607-PA | 1..537 | 1..537 | 2741 | 100 | Plus |
CG43394-PD | 537 | CG43394-PD | 1..537 | 1..537 | 2741 | 100 | Plus |
CG43394-PC | 948 | CG43394-PC | 1..536 | 1..536 | 2735 | 100 | Plus |
CG43394-PB | 948 | CG43394-PB | 1..536 | 1..536 | 2735 | 100 | Plus |
CG43394-PE | 525 | CG43394-PE | 1..499 | 1..499 | 2522 | 99 | Plus |
Translation from 572 to 2185
> RE27850.pep MILRTHLWLGVLLAALLLNTVVSGEDEDYGGEMIGSSLGGNDEIYDPAQL EAEVEKEMEQHRNSLEEDQTESSQVMELEVSTMRPMESRMNTMAPYSGEN SSAEMIDDASTQKRVSKVDKPARDYYYEDAPEDEMVASTTAKVATTMIPE YVRQAKAERFPQRDQEHTSTDYIEEDATKSVDEEPPADQFYRVEQHEPIP QAQVQQLPSRDKPKPFEYSSEDDYYDEHAEAKTTTTSTSTTQAPLPILRA RFGGFPWATTQAPSPPTTSSTSSTTTTSTTTTTTTTSTTTTPSPRKQPKH IQVTGGLKPELLPADQLRNYIKDVYIRMPLAVIVDPSSASLEQAKRLYID ALQDKNIDIKIVLVTLNAAGAPSAFSFNNTREFIAGLNSTKEHEGGNSFV GVLHAAELVPYDSAVFISTAVIPPHTELVQDAAITLLKKRIRLFLLWYGE RSGSENETEDAVGGILGEVAIRSGGEIIHIVSTEHGQHIAGNTLTLVADA YQGSQELDLPVDTTLSSLHVRIDANMRRATMETPNGG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15503-PA | 947 | GF15503-PA | 1..534 | 1..536 | 1995 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10517-PA | 534 | GG10517-PA | 1..534 | 1..537 | 2408 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13781-PA | 1013 | GH13781-PA | 1..597 | 1..536 | 1419 | 56.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43394-PA | 537 | CG31607-PA | 1..537 | 1..537 | 2741 | 100 | Plus |
CG43394-PD | 537 | CG43394-PD | 1..537 | 1..537 | 2741 | 100 | Plus |
CG43394-PC | 948 | CG43394-PC | 1..536 | 1..536 | 2735 | 100 | Plus |
CG43394-PB | 948 | CG43394-PB | 1..536 | 1..536 | 2735 | 100 | Plus |
CG43394-PE | 525 | CG43394-PE | 1..499 | 1..499 | 2522 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17185-PA | 1001 | GI17185-PA | 1..583 | 1..536 | 1446 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18801-PA | 966 | GL18801-PA | 31..552 | 26..536 | 1802 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25804-PA | 965 | GA25804-PA | 31..551 | 26..536 | 1775 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16775-PA | 536 | GM16775-PA | 1..536 | 1..537 | 2760 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23507-PA | 510 | GD23507-PA | 1..491 | 1..492 | 2534 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22193-PA | 990 | GJ22193-PA | 23..572 | 22..536 | 1495 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23929-PA | 959 | GK23929-PA | 50..550 | 39..536 | 1587 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18737-PA | 535 | GE18737-PA | 1..535 | 1..537 | 2740 | 95.9 | Plus |