BDGP Sequence Production Resources |
Search the DGRC for RE27864
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 278 |
Well: | 64 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mute-RD |
Protein status: | RE27864.pep: gold |
Preliminary Size: | 5220 |
Sequenced Size: | 3346 |
Gene | Date | Evidence |
---|---|---|
CG15610 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33456 | 2002-05-18 | Blastp of sequenced clone |
CG34415 | 2008-04-29 | Release 5.5 accounting |
CG34415 | 2008-08-15 | Release 5.9 accounting |
CG34415 | 2008-12-18 | 5.12 accounting |
3346 bp (3346 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119124
> RE27864.complete ACATAGCTTGTGCCATCGCTGTGTTTATAAATCGCGGACAATTTTCAATC TATTATTTTTCAGAAAACTTGGGATCAAAAGCGCACACGTCGCAATTTTA AAGCATCGAAAGCATCGTCGGTGGCTAGTGCTTCTTATTTGGAGTTTGTA CGCGAGGCGGTCGGCGAGGACCTGCTGCTGCCAGAGACTTTTGGTCAGGC TGCGGTCCCCAATGGCAGTGCTGCTGGTTCGGAACCGCCCAAGGAGAGCA AACCGAAGAAAAGGCCAGCGCAAAGGAGACCCCGCCCTGCGGAAAACCCA CCACAGCTTACCATCAATGTGAATTATGTTTTTGGCGGGAATACGAGCGC GGGAAACATACCCGGGGTCTCTGGGGTTTCGGTGCCCTTGGTGGCCGGCG GAAATCTGGCCGAGAACGTACTGAACATCAATCGCAGCTTATACACCGCC GCCGAGTGCAGTAGTCTGCTGGCCTTGCCGCCTGCTCCTCCACCATTGGA TGAAAATGCTCCGCCAGCCATCAACTTCACAGTAGACAAGTTCACTAACA CACTACAAATCTGCGAATTGGAGGAATCCAGCAAGGCCGTACAGCCGGAT CTGTTGCCTGCGCAGGATACCCCTTCCGTCCCAGGCAGAAACGCCAAAAG GGCGCGATACCAAATCTTTAAGCCAAAGGTTCAATCCGCCAATAAATCGC GAAAAGGGTCAACACCAACCCGCAGTCGATACCATATATTGCGCGAACGT TTGCGCCATAAACTAAGCCAGCGCTGTCATTCCCTAATCACCACCTATGA ATCCTACCTGCGTCATCACATCGAAAAATATAAAGACTGCGAGTTGGTAC AGGTCGTGCACAATCGTTTTTTCGCCCTCGAACTGTACACTCAACTTCTG GTCGATCTGAGGATGTTCTGCAGCAATACAAACTCTAAAACGGCAGCGCA GCCAAAGAGATCTAGGAGTGATGATGAGGCGGCGAAGCTGAGAAGAGCCA ACCGGCAGGAGGAGATGCTTCGCCAAATGCTCCAGCCGGATACTACAGAA GAGCGCAATCGCAAAGATGCCATTTTTGCCATGAATTTTTATGAAAAGGT AGAGGAGGCCTTGCTGAGTGCCAATCGCCTAGATGATTGCAAAAAATTCA ACAGTATTTTGCAAAACTTCGACCCCAGGCAGGAGAAAGTTTCATCTTTG TATTTGAAAGTGGAAGAAATTTTGCTACCCACTCATCCCGAACTGGCTGA AGTATTCCTCAACTTTTTGCTACCTGCCGAGGCCGCTGAGATGGGAAAAT TCTTTGAGCACTTTATGATATGCAATGCTACCAACTTTATCAACAAACTT AACATTTACTTCAGTAAGCAGCCAGCTCAAATCAGGAAGATTTATGCCTG TCTAAACGAGTTGGCCGAAATGCCTAATGTCAGCATGAAAAAAGTTGAAA ATAAGATAATGCCCTTGCTCAAGGGCAATCAATTTCTGATCGATTGGTTT GTGCAACAATTCCCACAGGGAAAACCACCAAAAAGAATCCTTTCTCCTGT AGAGACCATAAATTTGCATGACGTTCAAAACAATACAACGGGAGAATATA CGGAAACTATTCAAGAGTTTACAGATGTACCTACGCCAAGTAAACCAGGT TGTCACTTAAAGTATATCAATGGTCGCATATTTTATGGAGCCAAGATCCT ATTGCCTGCCAAACTGTCTTTTATGGCTGCCAGTATTTACAATGAACAAT CTCATGACGTGCCACCCGTCTCCAGTGACTCGATAAACTGCGCCCATGGT ATTCGTGCCCAGGGAGAAAAACTTCTTAGTATGGCTTCCAATACAGATAG CGACGATGGCGCGGATCGGAGTGAGGAAGATGATGCCAGCCGCGCCTTGA TTATTGATACCACGAGTGATGAGCAGAACAGCTGCTCATCTATTGAGATG TGCGATGAGACAGGCTTAAGAGCACATGCAATCAGATTGAATCCCGGCTT GTATACCAACTCAAGCTTTAACAATGCAGCGACCAGTACGCCCAATCTGG GCAACTCTCACCAATCCCATCATCCGCACGCCAAAAAAACTGCCATAAAC TTTGGTGAAATATCCCCACGCAAGCAATCGGCATTTAACAACTCGGGATT GAGTCCCTTATCGGCGGCCCCCAACAGTTCCCCTCAAGTCGACAAACGAA AGTCACCTACTAAGAAGATCCGATCTCCTCTTAATCAAACTCAGAGCAGA CAACGTGCCAATAATCAGCCAATGGTTGTTATCCATGAGTCTCAGCCTTC ATCTTCGCCAGCCATTGAGTGTGCAAAGCGCTTGCGCACGCTGATCGATC AGGAGAGCGTGCGGGATGCAGCAGATACAAAGGCGGGCATTCGAATTATT GCGCAAGCCAAGCAGCAACCTCCAAACCAATGCAGCTCTGAAGCTATTAC GAAAGTCGAGGTAGTCAGCCTGGATGAAAGTGCCGAGAATATGCCTTTCT GTACAAATCTCAAAATGGACACAGATCAATCGGAGGAGGAGCTGGAGCCA CTGCAATTAAGTGCTGGCAACACACCACAGCACGTGATCACAACACAATT CGATAGCGATGAGGACTGCAAGCTGGATGTTGTGGCCACGCTGGCGAACT GCACCACCACCGAAGATAGATCGGAATCGGCAGCGGCATTACCTGCCACC ACATCGCACTCTGAGTCTGGTAGTTCCCACTCGGCACCTTGGACTCGTGA AGAGGACAAAGTAATCCTGATCGAAATGAAAATAGGGGCACGGGATCGAG AGCAGCTCATTCGGCGTATGCGCGCCAAGCTAAAGAATCGCAGTATAGAA GAACTACGTAGTAGGCATCAGTTTCTTATGGACTTTCTGTCCAAATTGCA GGGAAAGTGAGGTTTCTCTAAGATGGTCTTTTGTGTATTATAATCCAAGC TGAAATAGGATACTAATAATAACTGTATATAAACGAAATGGTTTACCCCA TACCTACAAACCAAACTTTTTGAAGGGAATTCTTTGCTGTACTGATTACC TATTTAAGCATACAAAAATTCCCTTCAGAATACTTAGTTTTATTATTAAA AATTTGAATATTTTGAAATCTACTGTACGTTGAAATTGACTATTAATAGA TATATTGAAACCATGAATTTAATATTTTTGTGTCCGTCTAAGTTTACTTT TCTATATGATAAGAAGGTCGCATTGTTTGAATTTGATTATTCTATTCTAT AGTTTTGGTTAACGAGCACATTGTTTTCCATTGTCTTAAAGATTGTAAAT ATATAAAAATATAACATTTTTTAAAATCTCCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG34415-RD | 3329 | CG34415-RD | 1..3329 | 1..3329 | 16630 | 99.9 | Plus |
CG34415-RC | 5738 | CG34415-RC | 2471..5738 | 62..3329 | 16325 | 99.9 | Plus |
CG15614-RA | 2833 | CG15614-RA | 2569..2833 | 3335..3071 | 1310 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12835490..12837287 | 3330..1534 | 8790 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 12837936..12839007 | 1072..1 | 5300 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 12837347..12837676 | 1535..1206 | 1650 | 100 | Minus |
chr2R | 21145070 | chr2R | 12837738..12837868 | 1203..1073 | 640 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 16948291..16950092 | 3335..1534 | 8980 | 99.9 | Minus |
2R | 25286936 | 2R | 16950742..16951813 | 1072..1 | 5360 | 100 | Minus |
2R | 25286936 | 2R | 16950152..16950481 | 1535..1206 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 16950541..16950674 | 1206..1073 | 670 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 16949490..16951291 | 3335..1534 | 8980 | 99.8 | Minus |
2R | 25260384 | 2R | 16951941..16953012 | 1072..1 | 5360 | 100 | Minus |
2R | 25260384 | 2R | 16951351..16951680 | 1535..1206 | 1650 | 100 | Minus |
2R | 25260384 | 2R | 16951740..16951873 | 1206..1073 | 670 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12835526..12837285 | 1536..3294 | 99 | <- | Minus |
chr2R | 12837347..12837675 | 1207..1535 | 100 | <- | Minus |
chr2R | 12837735..12837868 | 1073..1206 | 98 | <- | Minus |
chr2R | 12837936..12839007 | 1..1072 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34415-RC | 2365..5220 | 54..2910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mute-RC | 2365..5220 | 54..2910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mute-RC | 2365..5220 | 54..2910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34415-RC | 2365..5220 | 54..2910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mute-RC | 2365..5220 | 54..2910 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34415-RD | 1..3329 | 1..3329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mute-RD | 1..3329 | 1..3329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mute-RD | 11..3340 | 1..3330 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34415-RD | 1..3329 | 1..3329 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mute-RD | 11..3340 | 1..3330 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16948295..16950090 | 1536..3331 | 99 | <- | Minus |
2R | 16950152..16950480 | 1207..1535 | 100 | <- | Minus |
2R | 16950541..16950674 | 1073..1206 | 100 | <- | Minus |
2R | 16950742..16951813 | 1..1072 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16948295..16950090 | 1536..3331 | 99 | <- | Minus |
2R | 16950152..16950480 | 1207..1535 | 100 | <- | Minus |
2R | 16950541..16950674 | 1073..1206 | 100 | <- | Minus |
2R | 16950742..16951813 | 1..1072 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16948295..16950090 | 1536..3331 | 99 | <- | Minus |
2R | 16950152..16950480 | 1207..1535 | 100 | <- | Minus |
2R | 16950541..16950674 | 1073..1206 | 100 | <- | Minus |
2R | 16950742..16951813 | 1..1072 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12835800..12837595 | 1536..3331 | 99 | <- | Minus |
arm_2R | 12837657..12837985 | 1207..1535 | 100 | <- | Minus |
arm_2R | 12838046..12838179 | 1073..1206 | 100 | <- | Minus |
arm_2R | 12838247..12839318 | 1..1072 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16949494..16951289 | 1536..3331 | 99 | <- | Minus |
2R | 16951351..16951679 | 1207..1535 | 100 | <- | Minus |
2R | 16951740..16951873 | 1073..1206 | 100 | <- | Minus |
2R | 16951941..16953012 | 1..1072 | 100 | Minus |
Translation from 912 to 2909
> RE27864.pep MFCSNTNSKTAAQPKRSRSDDEAAKLRRANRQEEMLRQMLQPDTTEERNR KDAIFAMNFYEKVEEALLSANRLDDCKKFNSILQNFDPRQEKVSSLYLKV EEILLPTHPELAEVFLNFLLPAEAAEMGKFFEHFMICNATNFINKLNIYF SKQPAQIRKIYACLNELAEMPNVSMKKVENKIMPLLKGNQFLIDWFVQQF PQGKPPKRILSPVETINLHDVQNNTTGEYTETIQEFTDVPTPSKPGCHLK YINGRIFYGAKILLPAKLSFMAASIYNEQSHDVPPVSSDSINCAHGIRAQ GEKLLSMASNTDSDDGADRSEEDDASRALIIDTTSDEQNSCSSIEMCDET GLRAHAIRLNPGLYTNSSFNNAATSTPNLGNSHQSHHPHAKKTAINFGEI SPRKQSAFNNSGLSPLSAAPNSSPQVDKRKSPTKKIRSPLNQTQSRQRAN NQPMVVIHESQPSSSPAIECAKRLRTLIDQESVRDAADTKAGIRIIAQAK QQPPNQCSSEAITKVEVVSLDESAENMPFCTNLKMDTDQSEEELEPLQLS AGNTPQHVITTQFDSDEDCKLDVVATLANCTTTEDRSESAAALPATTSHS ESGSSHSAPWTREEDKVILIEMKIGARDREQLIRRMRAKLKNRSIEELRS RHQFLMDFLSKLQGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13440-PA | 679 | GF13440-PA | 30..679 | 13..665 | 2730 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22234-PA | 668 | GG22234-PA | 1..668 | 1..665 | 3311 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23144-PA | 751 | GH23144-PA | 25..751 | 15..665 | 1837 | 56.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mute-PD | 665 | CG34415-PD | 1..665 | 1..665 | 3419 | 100 | Plus |
mute-PC | 1739 | CG34415-PC | 1075..1739 | 1..665 | 3419 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18481-PA | 682 | GI18481-PA | 1..682 | 1..665 | 2022 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10497-PA | 661 | GL10497-PA | 1..661 | 1..665 | 2408 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24391-PA | 674 | GA24391-PA | 1..674 | 1..665 | 2418 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20022-PA | 666 | GM20022-PA | 1..666 | 1..665 | 3364 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25508-PA | 666 | GD25508-PA | 1..666 | 1..665 | 3350 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21342-PA | 671 | GJ21342-PA | 26..671 | 15..665 | 2052 | 61.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21311-PA | 703 | GK21311-PA | 1..703 | 1..665 | 2134 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14232-PA | 667 | GE14232-PA | 1..667 | 1..665 | 3279 | 92.7 | Plus |
Translation from 912 to 2909
> RE27864.hyp MFCSNTNSKTAAQPKRSRSDDEAAKLRRANRQEEMLRQMLQPDTTEERNR KDAIFAMNFYEKVEEALLSANRLDDCKKFNSILQNFDPRQEKVSSLYLKV EEILLPTHPELAEVFLNFLLPAEAAEMGKFFEHFMICNATNFINKLNIYF SKQPAQIRKIYACLNELAEMPNVSMKKVENKIMPLLKGNQFLIDWFVQQF PQGKPPKRILSPVETINLHDVQNNTTGEYTETIQEFTDVPTPSKPGCHLK YINGRIFYGAKILLPAKLSFMAASIYNEQSHDVPPVSSDSINCAHGIRAQ GEKLLSMASNTDSDDGADRSEEDDASRALIIDTTSDEQNSCSSIEMCDET GLRAHAIRLNPGLYTNSSFNNAATSTPNLGNSHQSHHPHAKKTAINFGEI SPRKQSAFNNSGLSPLSAAPNSSPQVDKRKSPTKKIRSPLNQTQSRQRAN NQPMVVIHESQPSSSPAIECAKRLRTLIDQESVRDAADTKAGIRIIAQAK QQPPNQCSSEAITKVEVVSLDESAENMPFCTNLKMDTDQSEEELEPLQLS AGNTPQHVITTQFDSDEDCKLDVVATLANCTTTEDRSESAAALPATTSHS ESGSSHSAPWTREEDKVILIEMKIGARDREQLIRRMRAKLKNRSIEELRS RHQFLMDFLSKLQGK*