Clone RE27864 Report

Search the DGRC for RE27864

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:278
Well:64
Vector:pFlc-1
Associated Gene/Transcriptmute-RD
Protein status:RE27864.pep: gold
Preliminary Size:5220
Sequenced Size:3346

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15610 2002-01-01 Sim4 clustering to Release 2
CG33456 2002-05-18 Blastp of sequenced clone
CG34415 2008-04-29 Release 5.5 accounting
CG34415 2008-08-15 Release 5.9 accounting
CG34415 2008-12-18 5.12 accounting

Clone Sequence Records

RE27864.complete Sequence

3346 bp (3346 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119124

> RE27864.complete
ACATAGCTTGTGCCATCGCTGTGTTTATAAATCGCGGACAATTTTCAATC
TATTATTTTTCAGAAAACTTGGGATCAAAAGCGCACACGTCGCAATTTTA
AAGCATCGAAAGCATCGTCGGTGGCTAGTGCTTCTTATTTGGAGTTTGTA
CGCGAGGCGGTCGGCGAGGACCTGCTGCTGCCAGAGACTTTTGGTCAGGC
TGCGGTCCCCAATGGCAGTGCTGCTGGTTCGGAACCGCCCAAGGAGAGCA
AACCGAAGAAAAGGCCAGCGCAAAGGAGACCCCGCCCTGCGGAAAACCCA
CCACAGCTTACCATCAATGTGAATTATGTTTTTGGCGGGAATACGAGCGC
GGGAAACATACCCGGGGTCTCTGGGGTTTCGGTGCCCTTGGTGGCCGGCG
GAAATCTGGCCGAGAACGTACTGAACATCAATCGCAGCTTATACACCGCC
GCCGAGTGCAGTAGTCTGCTGGCCTTGCCGCCTGCTCCTCCACCATTGGA
TGAAAATGCTCCGCCAGCCATCAACTTCACAGTAGACAAGTTCACTAACA
CACTACAAATCTGCGAATTGGAGGAATCCAGCAAGGCCGTACAGCCGGAT
CTGTTGCCTGCGCAGGATACCCCTTCCGTCCCAGGCAGAAACGCCAAAAG
GGCGCGATACCAAATCTTTAAGCCAAAGGTTCAATCCGCCAATAAATCGC
GAAAAGGGTCAACACCAACCCGCAGTCGATACCATATATTGCGCGAACGT
TTGCGCCATAAACTAAGCCAGCGCTGTCATTCCCTAATCACCACCTATGA
ATCCTACCTGCGTCATCACATCGAAAAATATAAAGACTGCGAGTTGGTAC
AGGTCGTGCACAATCGTTTTTTCGCCCTCGAACTGTACACTCAACTTCTG
GTCGATCTGAGGATGTTCTGCAGCAATACAAACTCTAAAACGGCAGCGCA
GCCAAAGAGATCTAGGAGTGATGATGAGGCGGCGAAGCTGAGAAGAGCCA
ACCGGCAGGAGGAGATGCTTCGCCAAATGCTCCAGCCGGATACTACAGAA
GAGCGCAATCGCAAAGATGCCATTTTTGCCATGAATTTTTATGAAAAGGT
AGAGGAGGCCTTGCTGAGTGCCAATCGCCTAGATGATTGCAAAAAATTCA
ACAGTATTTTGCAAAACTTCGACCCCAGGCAGGAGAAAGTTTCATCTTTG
TATTTGAAAGTGGAAGAAATTTTGCTACCCACTCATCCCGAACTGGCTGA
AGTATTCCTCAACTTTTTGCTACCTGCCGAGGCCGCTGAGATGGGAAAAT
TCTTTGAGCACTTTATGATATGCAATGCTACCAACTTTATCAACAAACTT
AACATTTACTTCAGTAAGCAGCCAGCTCAAATCAGGAAGATTTATGCCTG
TCTAAACGAGTTGGCCGAAATGCCTAATGTCAGCATGAAAAAAGTTGAAA
ATAAGATAATGCCCTTGCTCAAGGGCAATCAATTTCTGATCGATTGGTTT
GTGCAACAATTCCCACAGGGAAAACCACCAAAAAGAATCCTTTCTCCTGT
AGAGACCATAAATTTGCATGACGTTCAAAACAATACAACGGGAGAATATA
CGGAAACTATTCAAGAGTTTACAGATGTACCTACGCCAAGTAAACCAGGT
TGTCACTTAAAGTATATCAATGGTCGCATATTTTATGGAGCCAAGATCCT
ATTGCCTGCCAAACTGTCTTTTATGGCTGCCAGTATTTACAATGAACAAT
CTCATGACGTGCCACCCGTCTCCAGTGACTCGATAAACTGCGCCCATGGT
ATTCGTGCCCAGGGAGAAAAACTTCTTAGTATGGCTTCCAATACAGATAG
CGACGATGGCGCGGATCGGAGTGAGGAAGATGATGCCAGCCGCGCCTTGA
TTATTGATACCACGAGTGATGAGCAGAACAGCTGCTCATCTATTGAGATG
TGCGATGAGACAGGCTTAAGAGCACATGCAATCAGATTGAATCCCGGCTT
GTATACCAACTCAAGCTTTAACAATGCAGCGACCAGTACGCCCAATCTGG
GCAACTCTCACCAATCCCATCATCCGCACGCCAAAAAAACTGCCATAAAC
TTTGGTGAAATATCCCCACGCAAGCAATCGGCATTTAACAACTCGGGATT
GAGTCCCTTATCGGCGGCCCCCAACAGTTCCCCTCAAGTCGACAAACGAA
AGTCACCTACTAAGAAGATCCGATCTCCTCTTAATCAAACTCAGAGCAGA
CAACGTGCCAATAATCAGCCAATGGTTGTTATCCATGAGTCTCAGCCTTC
ATCTTCGCCAGCCATTGAGTGTGCAAAGCGCTTGCGCACGCTGATCGATC
AGGAGAGCGTGCGGGATGCAGCAGATACAAAGGCGGGCATTCGAATTATT
GCGCAAGCCAAGCAGCAACCTCCAAACCAATGCAGCTCTGAAGCTATTAC
GAAAGTCGAGGTAGTCAGCCTGGATGAAAGTGCCGAGAATATGCCTTTCT
GTACAAATCTCAAAATGGACACAGATCAATCGGAGGAGGAGCTGGAGCCA
CTGCAATTAAGTGCTGGCAACACACCACAGCACGTGATCACAACACAATT
CGATAGCGATGAGGACTGCAAGCTGGATGTTGTGGCCACGCTGGCGAACT
GCACCACCACCGAAGATAGATCGGAATCGGCAGCGGCATTACCTGCCACC
ACATCGCACTCTGAGTCTGGTAGTTCCCACTCGGCACCTTGGACTCGTGA
AGAGGACAAAGTAATCCTGATCGAAATGAAAATAGGGGCACGGGATCGAG
AGCAGCTCATTCGGCGTATGCGCGCCAAGCTAAAGAATCGCAGTATAGAA
GAACTACGTAGTAGGCATCAGTTTCTTATGGACTTTCTGTCCAAATTGCA
GGGAAAGTGAGGTTTCTCTAAGATGGTCTTTTGTGTATTATAATCCAAGC
TGAAATAGGATACTAATAATAACTGTATATAAACGAAATGGTTTACCCCA
TACCTACAAACCAAACTTTTTGAAGGGAATTCTTTGCTGTACTGATTACC
TATTTAAGCATACAAAAATTCCCTTCAGAATACTTAGTTTTATTATTAAA
AATTTGAATATTTTGAAATCTACTGTACGTTGAAATTGACTATTAATAGA
TATATTGAAACCATGAATTTAATATTTTTGTGTCCGTCTAAGTTTACTTT
TCTATATGATAAGAAGGTCGCATTGTTTGAATTTGATTATTCTATTCTAT
AGTTTTGGTTAACGAGCACATTGTTTTCCATTGTCTTAAAGATTGTAAAT
ATATAAAAATATAACATTTTTTAAAATCTCCAAAAAAAAAAAAAAA

RE27864.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG34415-RD 3329 CG34415-RD 1..3329 1..3329 16630 99.9 Plus
CG34415-RC 5738 CG34415-RC 2471..5738 62..3329 16325 99.9 Plus
CG15614-RA 2833 CG15614-RA 2569..2833 3335..3071 1310 99.6 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12835490..12837287 3330..1534 8790 99.4 Minus
chr2R 21145070 chr2R 12837936..12839007 1072..1 5300 99.6 Minus
chr2R 21145070 chr2R 12837347..12837676 1535..1206 1650 100 Minus
chr2R 21145070 chr2R 12837738..12837868 1203..1073 640 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16948291..16950092 3335..1534 8980 99.9 Minus
2R 25286936 2R 16950742..16951813 1072..1 5360 100 Minus
2R 25286936 2R 16950152..16950481 1535..1206 1650 100 Minus
2R 25286936 2R 16950541..16950674 1206..1073 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16949490..16951291 3335..1534 8980 99.8 Minus
2R 25260384 2R 16951941..16953012 1072..1 5360 100 Minus
2R 25260384 2R 16951351..16951680 1535..1206 1650 100 Minus
2R 25260384 2R 16951740..16951873 1206..1073 670 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:13:39 has no hits.

RE27864.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:14:34 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12835526..12837285 1536..3294 99 <- Minus
chr2R 12837347..12837675 1207..1535 100 <- Minus
chr2R 12837735..12837868 1073..1206 98 <- Minus
chr2R 12837936..12839007 1..1072 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:06:41 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
CG34415-RC 2365..5220 54..2910 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:01 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
mute-RC 2365..5220 54..2910 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:09:10 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
mute-RC 2365..5220 54..2910 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:26 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
CG34415-RC 2365..5220 54..2910 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:19 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
mute-RC 2365..5220 54..2910 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:22 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
CG34415-RD 1..3329 1..3329 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:00 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
mute-RD 1..3329 1..3329 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:10 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
mute-RD 11..3340 1..3330 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:27 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
CG34415-RD 1..3329 1..3329 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:19 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
mute-RD 11..3340 1..3330 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:34 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16948295..16950090 1536..3331 99 <- Minus
2R 16950152..16950480 1207..1535 100 <- Minus
2R 16950541..16950674 1073..1206 100 <- Minus
2R 16950742..16951813 1..1072 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:34 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16948295..16950090 1536..3331 99 <- Minus
2R 16950152..16950480 1207..1535 100 <- Minus
2R 16950541..16950674 1073..1206 100 <- Minus
2R 16950742..16951813 1..1072 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:14:34 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16948295..16950090 1536..3331 99 <- Minus
2R 16950152..16950480 1207..1535 100 <- Minus
2R 16950541..16950674 1073..1206 100 <- Minus
2R 16950742..16951813 1..1072 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:10 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12835800..12837595 1536..3331 99 <- Minus
arm_2R 12837657..12837985 1207..1535 100 <- Minus
arm_2R 12838046..12838179 1073..1206 100 <- Minus
arm_2R 12838247..12839318 1..1072 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:47 Download gff for RE27864.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16949494..16951289 1536..3331 99 <- Minus
2R 16951351..16951679 1207..1535 100 <- Minus
2R 16951740..16951873 1073..1206 100 <- Minus
2R 16951941..16953012 1..1072 100   Minus

RE27864.pep Sequence

Translation from 912 to 2909

> RE27864.pep
MFCSNTNSKTAAQPKRSRSDDEAAKLRRANRQEEMLRQMLQPDTTEERNR
KDAIFAMNFYEKVEEALLSANRLDDCKKFNSILQNFDPRQEKVSSLYLKV
EEILLPTHPELAEVFLNFLLPAEAAEMGKFFEHFMICNATNFINKLNIYF
SKQPAQIRKIYACLNELAEMPNVSMKKVENKIMPLLKGNQFLIDWFVQQF
PQGKPPKRILSPVETINLHDVQNNTTGEYTETIQEFTDVPTPSKPGCHLK
YINGRIFYGAKILLPAKLSFMAASIYNEQSHDVPPVSSDSINCAHGIRAQ
GEKLLSMASNTDSDDGADRSEEDDASRALIIDTTSDEQNSCSSIEMCDET
GLRAHAIRLNPGLYTNSSFNNAATSTPNLGNSHQSHHPHAKKTAINFGEI
SPRKQSAFNNSGLSPLSAAPNSSPQVDKRKSPTKKIRSPLNQTQSRQRAN
NQPMVVIHESQPSSSPAIECAKRLRTLIDQESVRDAADTKAGIRIIAQAK
QQPPNQCSSEAITKVEVVSLDESAENMPFCTNLKMDTDQSEEELEPLQLS
AGNTPQHVITTQFDSDEDCKLDVVATLANCTTTEDRSESAAALPATTSHS
ESGSSHSAPWTREEDKVILIEMKIGARDREQLIRRMRAKLKNRSIEELRS
RHQFLMDFLSKLQGK*

RE27864.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13440-PA 679 GF13440-PA 30..679 13..665 2730 77.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22234-PA 668 GG22234-PA 1..668 1..665 3311 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23144-PA 751 GH23144-PA 25..751 15..665 1837 56.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
mute-PD 665 CG34415-PD 1..665 1..665 3419 100 Plus
mute-PC 1739 CG34415-PC 1075..1739 1..665 3419 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18481-PA 682 GI18481-PA 1..682 1..665 2022 63.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10497-PA 661 GL10497-PA 1..661 1..665 2408 69.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24391-PA 674 GA24391-PA 1..674 1..665 2418 69.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20022-PA 666 GM20022-PA 1..666 1..665 3364 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25508-PA 666 GD25508-PA 1..666 1..665 3350 93.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21342-PA 671 GJ21342-PA 26..671 15..665 2052 61.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21311-PA 703 GK21311-PA 1..703 1..665 2134 61.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14232-PA 667 GE14232-PA 1..667 1..665 3279 92.7 Plus

RE27864.hyp Sequence

Translation from 912 to 2909

> RE27864.hyp
MFCSNTNSKTAAQPKRSRSDDEAAKLRRANRQEEMLRQMLQPDTTEERNR
KDAIFAMNFYEKVEEALLSANRLDDCKKFNSILQNFDPRQEKVSSLYLKV
EEILLPTHPELAEVFLNFLLPAEAAEMGKFFEHFMICNATNFINKLNIYF
SKQPAQIRKIYACLNELAEMPNVSMKKVENKIMPLLKGNQFLIDWFVQQF
PQGKPPKRILSPVETINLHDVQNNTTGEYTETIQEFTDVPTPSKPGCHLK
YINGRIFYGAKILLPAKLSFMAASIYNEQSHDVPPVSSDSINCAHGIRAQ
GEKLLSMASNTDSDDGADRSEEDDASRALIIDTTSDEQNSCSSIEMCDET
GLRAHAIRLNPGLYTNSSFNNAATSTPNLGNSHQSHHPHAKKTAINFGEI
SPRKQSAFNNSGLSPLSAAPNSSPQVDKRKSPTKKIRSPLNQTQSRQRAN
NQPMVVIHESQPSSSPAIECAKRLRTLIDQESVRDAADTKAGIRIIAQAK
QQPPNQCSSEAITKVEVVSLDESAENMPFCTNLKMDTDQSEEELEPLQLS
AGNTPQHVITTQFDSDEDCKLDVVATLANCTTTEDRSESAAALPATTSHS
ESGSSHSAPWTREEDKVILIEMKIGARDREQLIRRMRAKLKNRSIEELRS
RHQFLMDFLSKLQGK*

RE27864.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
mute-PD 665 CG34415-PD 1..665 1..665 3419 100 Plus
mute-PC 1739 CG34415-PC 1075..1739 1..665 3419 100 Plus