BDGP Sequence Production Resources |
Search the DGRC for RE27904
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 279 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG32276-RA |
Protein status: | RE27904.pep: gold |
Sequenced Size: | 878 |
Gene | Date | Evidence |
---|---|---|
CG32276 | 2001-12-14 | Blastp of sequenced clone |
CG14966 | 2002-01-01 | Sim4 clustering to Release 2 |
CG32276 | 2003-01-01 | Sim4 clustering to Release 3 |
CG32276 | 2008-04-29 | Release 5.5 accounting |
CG32276 | 2008-08-15 | Release 5.9 accounting |
CG32276 | 2008-12-18 | 5.12 accounting |
878 bp (878 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071239
> RE27904.complete AGTATACGTGTCGTCGCTTTCTCATTCGTTTTGTTATTTTTGGGCTGAAA GGTACGCTGTTTTCTCGGGCAACTGCAAAGCCACAGCTTGTTCCGTTTCA TTTCGAAGTTATCAATTGCACGCAAGCTGCAGCCCAATCAATAGGCAATT AACAAACAATTCATTTGCGAATTTCAGTGAGATTGTGCTTCAACAACAAC ACAAGAAAATGGCTCCACCACAGAGAATGCGCGTCGCTAACGAGAAGGCC AGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGAAAACGAA AGAGGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCGCTGTTCATCTTTG TGGTCTGCGGCTCTGCCATTTTCCAGATTGTTCAGTCGATACGCGCCGCG TAAGGAAAGGCTTCACCTCGCATAAGATACACAGAGAGCAGGTGCATCTG GAGGAAGATAATAGACCTTTCCGGAACCTTCACTTGCTACTACTAACACC TTCCCTAGCTTAATAGTCCCCGGCAACATGTGCAACCAGAGGATGACCCC AAACAACTTGGCTTTATTATCGTTTCTGCAATATCAACTCCTATAAAACA CATACAAAATTTAAGTCCATTTAAAGCATTTTGCATTAATTGATTTAACT GTAAGCTCTGCAATGTGCATTCCTGCAATTCTCTCCTAAGCAACTGAATA ATGATCCCCGATCATTTATAGGCGATAAATGCATTTTTAAGATGCTTCTC GGCGCAGTTTTAAATAGTGCAAAGTGTTAAAGCGTTGTTTTCTAATGCAA AGACGAGTAGAGAAGAAACTATGAGTACATAACAATGATGAATATATGAT AATTTTTTACCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32276-RA | 985 | CG32276-RA | 50..910 | 1..861 | 4305 | 100 | Plus |
CG32276-RB | 859 | CG32276-RB | 99..784 | 176..861 | 3430 | 100 | Plus |
CG32276.a | 914 | CG32276.a | 154..839 | 176..861 | 3430 | 100 | Plus |
CG32276-RB | 859 | CG32276-RB | 50..100 | 1..51 | 255 | 100 | Plus |
CG32276.a | 914 | CG32276.a | 105..155 | 1..51 | 255 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 349..497 | 710..857 | 129 | 56.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 3197261..3197830 | 293..862 | 99 | <- | Minus |
chr3L | 3198151..3198442 | 1..292 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RB | 1..195 | 209..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RB | 1..195 | 209..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RA | 1..195 | 209..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RB | 1..195 | 209..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RA | 1..195 | 209..403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RA | 1..861 | 1..862 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RA | 1..861 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RA | 5..865 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RA | 1..861 | 1..862 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32276-RA | 5..865 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3197862..3198431 | 293..862 | 99 | <- | Minus |
3L | 3198752..3199043 | 1..292 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3197862..3198431 | 293..862 | 99 | <- | Minus |
3L | 3198752..3199043 | 1..292 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3197862..3198431 | 293..862 | 99 | <- | Minus |
3L | 3198752..3199043 | 1..292 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 3197862..3198431 | 293..862 | 99 | <- | Minus |
arm_3L | 3198752..3199043 | 1..292 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3197862..3198431 | 293..862 | 99 | <- | Minus |
3L | 3198752..3199043 | 1..292 | 100 | Minus |
Translation from 0 to 402
> RE27904.hyp VYVSSLSHSFCYFWAERYAVFSGNCKATACSVSFRSYQLHASCSPINRQL TNNSFANFSEIVLQQQHKKMAPPQRMRVANEKASKYVTMRGNVPKSSKTK EGQYPVGPWLLALFIFVVCGSAIFQIVQSIRAA*
Translation from 208 to 402
> RE27904.pep MAPPQRMRVANEKASKYVTMRGNVPKSSKTKEGQYPVGPWLLALFIFVVC GSAIFQIVQSIRAA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24382-PA | 64 | GF24382-PA | 1..64 | 1..64 | 331 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14279-PA | 64 | GG14279-PA | 1..64 | 1..64 | 325 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15253-PA | 64 | GH15253-PA | 1..64 | 1..64 | 326 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32276-PB | 64 | CG32276-PB | 1..64 | 1..64 | 327 | 100 | Plus |
CG32276-PA | 64 | CG32276-PA | 1..64 | 1..64 | 327 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11962-PA | 64 | GI11962-PA | 1..64 | 1..64 | 331 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25245-PA | 64 | GL25245-PA | 1..64 | 1..64 | 326 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16804-PA | 64 | GA16804-PA | 1..64 | 1..64 | 326 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14072-PA | 64 | GM14072-PA | 1..64 | 1..64 | 333 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13346-PA | 64 | GD13346-PA | 1..64 | 1..64 | 333 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12186-PA | 64 | GJ12186-PA | 1..64 | 1..64 | 326 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25584-PA | 64 | GK25584-PA | 1..64 | 1..64 | 331 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20707-PA | 64 | GE20707-PA | 1..64 | 1..64 | 331 | 98.4 | Plus |