BDGP Sequence Production Resources |
Search the DGRC for RE28175
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 281 |
Well: | 75 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Prosalpha4-RA |
Protein status: | RE28175.pep: gold |
Preliminary Size: | 985 |
Sequenced Size: | 1190 |
Gene | Date | Evidence |
---|---|---|
CG3422 | 2001-12-14 | Blastp of sequenced clone |
CG3422 | 2002-01-01 | Sim4 clustering to Release 2 |
Pros28.1 | 2008-04-29 | Release 5.5 accounting |
Pros28.1 | 2008-08-15 | Release 5.9 accounting |
Pros28.1 | 2008-12-18 | 5.12 accounting |
1190 bp (1190 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071241
> RE28175.complete AATTTAGTAATTTTCATCGAACCCATGCTGCGGTCACACTGCGGCATTTC CTCAAAAAAGCATCATCATTGCCTGGCGAATTCGAGAAGGAAAAAGCTAT AAGTTAATATTCTGCAAGTACCTCAGCTATTGAATAAAGCAACAAGATGT CCTCACGCTACGATCGTGCTGTAACCATATTCTCTCCCGACGGTCACCTC CTGCAGGTGGAGTATGCCCAGGAGGCCGTTCGCAAGGGATCGACTGCGGT CGGAGTTCGCGGCGCCAACTGCGTTGTGCTTGGCGTGGAGAAGAAGTCGG TGGCCCAACTGCAGGAGGATCGAAAGGTGCGCAAGATTTGCATGCTCGAC AACCACGTTGTAATGGCTTTTGCCGGTCTCACGGCCGACGCTCGCATCAT GATCAATCGTGCCCAGGTGGAGTGCCAGAGCCATCGTCTCAATGTCGAGG ATCCCGTGACCCTCGAGTACATAACCAGATTCATTGCCCAGCTGAAACAA AAATACACGCAGAGCAATGGCCGCCGTCCCTTCGGTATTTCCTGCCTTAT TGGCGGCTTCGATGCCGATGGCTCTGCGCATCTGTTCCAGACTGAGCCGT CGGGCATTTTCTACGAGTATAAGGCTAACGCCACCGGGCGATCGGCAAAG GTTGTGCGCGAGTTCTTCGAGAAGTCCTACCGCGAGGAGGAGGTGGCCAA CGAGCACGGAGCCGTCAAACTGGCCATCCGTGCGCTGCTCGAGGTGGCGC AGTCAGGCCAGAACAATCTGGAGGTGGCCATCATGGAGAACGGCAAGCCA CTGAAAATGCTGGACACCGATGTCATTACCGATTATGTTAAGATCATCGA GAAGGAGAAGGAGGAGGAGCTCGAGAAGAAGAAACAGAAAAAGTAACACC CAGCAGCTGGGACACTTCTTCGATGGAAGGCCGTTGCATTGAATCGCTTT CCATGCATTCGGCGACACTATCTGGTGTCGCCGCCCACATTCTGTCTGCT CATTGTAGCCAACCTGATTTGACTTGGAAAACGATTCAAATTGAATTCGG TGAACCGAATGCATACTTTTTTTAATTACCACTTTCTATTCTTCGGAACC CTGTAAAACGGTATGAAAATATTTGATCTGTATAAAATACATGCGTCATC ATACATTAGGCGGAGCTCCTGTTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pros28_1-RA | 1236 | Pros28_1-RA | 40..1215 | 1..1176 | 5880 | 100 | Plus |
Pros28_1A-RA | 946 | Pros28_1A-RA | 56..589 | 146..679 | 1080 | 80.1 | Plus |
Pros28_1B-RA | 1331 | Pros28_1B-RA | 253..608 | 282..637 | 700 | 79.7 | Plus |
Pros28_1B-RA | 1331 | Pros28_1B-RA | 130..217 | 159..246 | 245 | 85.2 | Plus |
Pros28_1A-RA | 946 | Pros28_1A-RA | 678..726 | 768..816 | 170 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16166591..16167288 | 477..1174 | 3475 | 99.9 | Plus |
chrX | 22417052 | chrX | 16165973..16166222 | 1..250 | 1250 | 100 | Plus |
chr3R | 27901430 | chr3R | 16572264..16572934 | 816..146 | 1180 | 78.4 | Minus |
chrX | 22417052 | chrX | 16166297..16166527 | 248..478 | 1155 | 100 | Plus |
chr2R | 21145070 | chr2R | 20387691..20387885 | 476..282 | 390 | 80 | Minus |
chr2R | 21145070 | chr2R | 20387350..20387511 | 637..476 | 330 | 80.2 | Minus |
chr2R | 21145070 | chr2R | 20387981..20388072 | 250..159 | 250 | 84.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16276890..16277589 | 477..1176 | 3500 | 100 | Plus |
X | 23542271 | X | 16276272..16276521 | 1..250 | 1250 | 100 | Plus |
3R | 32079331 | 3R | 20748349..20749019 | 816..146 | 1180 | 78.4 | Minus |
X | 23542271 | X | 16276596..16276826 | 248..478 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 24501794..24501988 | 476..282 | 390 | 80 | Minus |
2R | 25286936 | 2R | 24501453..24501614 | 637..476 | 330 | 80.2 | Minus |
2R | 25286936 | 2R | 24502084..24502175 | 250..159 | 250 | 84.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16284988..16285687 | 477..1176 | 3500 | 100 | Plus |
X | 23527363 | X | 16284370..16284619 | 1..250 | 1250 | 100 | Plus |
X | 23527363 | X | 16284694..16284924 | 248..478 | 1155 | 100 | Plus |
3R | 31820162 | 3R | 20489317..20489850 | 679..146 | 1080 | 80.1 | Minus |
2R | 25260384 | 2R | 24502993..24503187 | 476..282 | 390 | 80 | Minus |
2R | 25260384 | 2R | 24502652..24502813 | 637..476 | 330 | 80.2 | Minus |
2R | 25260384 | 2R | 24503283..24503374 | 250..159 | 250 | 84.7 | Minus |
3R | 31820162 | 3R | 20489180..20489228 | 816..768 | 170 | 89.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16165973..16166220 | 1..248 | 100 | -> | Plus |
chrX | 16166298..16166527 | 249..478 | 100 | -> | Plus |
chrX | 16166593..16167288 | 479..1174 | 93 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros28.1-RA | 1..750 | 147..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros28.1-RA | 1..750 | 147..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha4-RA | 1..750 | 147..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros28.1-RA | 1..750 | 147..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha4-RA | 1..750 | 147..896 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros28.1-RA | 1..1174 | 1..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros28.1-RA | 1..1174 | 1..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha4-RA | 3..1176 | 1..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros28.1-RA | 1..1174 | 1..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha4-RA | 3..1176 | 1..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16276272..16276519 | 1..248 | 100 | -> | Plus |
X | 16276597..16276826 | 249..478 | 100 | -> | Plus |
X | 16276892..16277587 | 479..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16276272..16276519 | 1..248 | 100 | -> | Plus |
X | 16276597..16276826 | 249..478 | 100 | -> | Plus |
X | 16276892..16277587 | 479..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16276272..16276519 | 1..248 | 100 | -> | Plus |
X | 16276597..16276826 | 249..478 | 100 | -> | Plus |
X | 16276892..16277587 | 479..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16170305..16170552 | 1..248 | 100 | -> | Plus |
arm_X | 16170630..16170859 | 249..478 | 100 | -> | Plus |
arm_X | 16170925..16171620 | 479..1174 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16284370..16284617 | 1..248 | 100 | -> | Plus |
X | 16284695..16284924 | 249..478 | 100 | -> | Plus |
X | 16284990..16285685 | 479..1174 | 100 | Plus |
Translation from 146 to 895
> RE28175.pep MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKK SVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNV EDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTE PSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEV AQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19028-PA | 249 | GF19028-PA | 1..231 | 1..231 | 1128 | 90.5 | Plus |
Dana\GF11246-PA | 252 | GF11246-PA | 1..246 | 1..245 | 866 | 64 | Plus |
Dana\GF17957-PA | 234 | GF17957-PA | 3..233 | 2..234 | 402 | 37 | Plus |
Dana\GF13117-PA | 243 | GF13117-PA | 6..239 | 3..231 | 342 | 33.8 | Plus |
Dana\GF15751-PA | 285 | GF15751-PA | 5..245 | 3..246 | 321 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17945-PA | 249 | GG17945-PA | 1..231 | 1..231 | 1187 | 95.2 | Plus |
Dere\GG15180-PA | 251 | GG15180-PA | 1..248 | 1..248 | 1071 | 79 | Plus |
Dere\GG19922-PA | 252 | GG19922-PA | 1..250 | 1..249 | 831 | 59.6 | Plus |
Dere\GG18927-PA | 234 | GG18927-PA | 3..233 | 2..234 | 396 | 36.4 | Plus |
Dere\GG20675-PA | 244 | GG20675-PA | 6..243 | 3..234 | 342 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12557-PA | 249 | GH12557-PA | 1..234 | 1..234 | 1155 | 92.3 | Plus |
Dgri\GH20892-PA | 254 | GH20892-PA | 1..249 | 1..248 | 707 | 52.2 | Plus |
Dgri\GH13898-PA | 234 | GH13898-PA | 3..233 | 2..234 | 398 | 36.9 | Plus |
Dgri\GH21393-PA | 245 | GH21393-PA | 6..220 | 3..213 | 349 | 35.3 | Plus |
Dgri\GH21325-PA | 253 | GH21325-PA | 4..179 | 1..176 | 303 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prosalpha4-PA | 249 | CG3422-PA | 1..249 | 1..249 | 1257 | 100 | Plus |
Prosalpha4T1-PA | 249 | CG17268-PA | 1..249 | 1..249 | 958 | 75.1 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..249 | 809 | 60.4 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..249 | 809 | 60.4 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 3..233 | 2..234 | 368 | 36.4 | Plus |
Prosalpha5-PB | 244 | CG10938-PB | 6..243 | 3..234 | 335 | 33.6 | Plus |
Prosalpha5-PA | 244 | CG10938-PA | 6..243 | 3..234 | 335 | 33.6 | Plus |
Prosalpha6-PA | 279 | CG4904-PA | 4..245 | 3..240 | 318 | 30.2 | Plus |
Prosalpha6-PB | 279 | CG4904-PB | 4..245 | 3..240 | 318 | 30.2 | Plus |
Prosalpha3-PA | 264 | CG9327-PA | 1..255 | 1..249 | 294 | 29 | Plus |
Prosalpha6T-PA | 289 | CG5648-PA | 4..236 | 3..235 | 293 | 32.2 | Plus |
Prosalpha3T-PA | 251 | CG1736-PA | 1..176 | 1..176 | 288 | 33.5 | Plus |
Prosalpha7-PA | 253 | CG1519-PA | 8..196 | 5..190 | 283 | 32.3 | Plus |
Prosalpha1-PB | 244 | CG18495-PB | 6..244 | 2..237 | 277 | 29 | Plus |
Prosalpha1-PA | 244 | CG18495-PA | 6..244 | 2..237 | 277 | 29 | Plus |
CG30382-PB | 244 | CG30382-PB | 6..244 | 2..237 | 277 | 29 | Plus |
CG30382-PA | 244 | CG30382-PA | 6..244 | 2..237 | 277 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11210-PA | 249 | GI11210-PA | 1..234 | 1..234 | 1163 | 91.9 | Plus |
Dmoj\GI18902-PA | 253 | GI18902-PA | 4..241 | 5..241 | 741 | 58 | Plus |
Dmoj\GI18257-PA | 254 | GI18257-PA | 4..241 | 1..237 | 638 | 48.3 | Plus |
Dmoj\GI24829-PA | 234 | GI24829-PA | 3..233 | 2..234 | 401 | 37.3 | Plus |
Dmoj\GI18573-PA | 245 | GI18573-PA | 6..219 | 3..212 | 352 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21346-PA | 185 | GL21346-PA | 1..179 | 35..213 | 871 | 89.9 | Plus |
Dper\GL20413-PA | 252 | GL20413-PA | 1..246 | 1..245 | 797 | 58.1 | Plus |
Dper\GL26115-PA | 219 | GL26115-PA | 1..219 | 1..249 | 769 | 62.6 | Plus |
Dper\GL27312-PA | 234 | GL27312-PA | 3..233 | 2..234 | 394 | 36.2 | Plus |
Dper\GL11421-PA | 244 | GL11421-PA | 6..241 | 3..232 | 333 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17441-PA | 249 | GA17441-PA | 1..231 | 1..231 | 1129 | 90.5 | Plus |
Dpse\GA25292-PA | 249 | GA25292-PA | 1..249 | 1..249 | 1109 | 81.1 | Plus |
Dpse\GA25111-PA | 252 | GA25111-PA | 1..246 | 1..245 | 797 | 58.1 | Plus |
Dpse\GA18772-PA | 234 | GA18772-PA | 3..233 | 2..234 | 394 | 36.2 | Plus |
Dpse\GA10654-PA | 244 | GA10654-PA | 6..241 | 3..232 | 333 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Pros28.1A-PA | 251 | GM23164-PA | 1..248 | 1..248 | 1025 | 76.2 | Plus |
Dsec\Pros28.1B-PA | 252 | GM11825-PA | 1..250 | 1..249 | 859 | 61.2 | Plus |
Dsec\GM24033-PA | 234 | GM24033-PA | 3..233 | 2..234 | 392 | 36.4 | Plus |
Dsec\GM21770-PA | 244 | GM21770-PA | 6..243 | 3..234 | 361 | 34.9 | Plus |
Dsec\GM18005-PA | 281 | GM18005-PA | 4..240 | 3..233 | 327 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Pros28.1A-PA | 251 | GD20037-PA | 1..248 | 1..248 | 1026 | 76.2 | Plus |
Dsim\Pros28.1B-PA | 252 | GD24946-PA | 1..250 | 1..249 | 855 | 61.2 | Plus |
Dsim\GD18834-PA | 234 | GD18834-PA | 3..233 | 2..234 | 392 | 36.4 | Plus |
Dsim\GD11263-PA | 244 | GD11263-PA | 6..243 | 3..234 | 359 | 34.9 | Plus |
Dsim\GD23664-PA | 281 | GD23664-PA | 4..240 | 3..233 | 327 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Pros28.1-PA | 249 | GJ18504-PA | 1..234 | 1..234 | 1156 | 92.3 | Plus |
Dvir\GJ20726-PA | 251 | GJ20726-PA | 1..248 | 1..248 | 770 | 57 | Plus |
Dvir\Pros28.1B-PA | 251 | GJ19357-PA | 2..248 | 3..248 | 696 | 51.8 | Plus |
Dvir\GJ24473-PA | 234 | GJ24473-PA | 3..233 | 2..234 | 400 | 37.3 | Plus |
Dvir\GJ20367-PA | 245 | GJ20367-PA | 6..220 | 3..213 | 342 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25669-PA | 249 | GK25669-PA | 1..234 | 1..234 | 1165 | 91.9 | Plus |
Dwil\GK19681-PA | 255 | GK19681-PA | 1..248 | 1..247 | 797 | 59.3 | Plus |
Dwil\GK14404-PA | 234 | GK14404-PA | 3..233 | 2..234 | 377 | 35.6 | Plus |
Dwil\GK21413-PA | 245 | GK21413-PA | 6..221 | 3..213 | 343 | 35.2 | Plus |
Dwil\GK22956-PA | 262 | GK22956-PA | 1..240 | 1..236 | 301 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17253-PA | 249 | GE17253-PA | 1..231 | 1..231 | 1181 | 95.2 | Plus |
Dyak\GE25043-PA | 251 | GE25043-PA | 1..248 | 1..248 | 1049 | 77.8 | Plus |
Dyak\GE11446-PA | 252 | GE11446-PA | 1..250 | 1..249 | 847 | 61 | Plus |
Dyak\GE26194-PA | 234 | GE26194-PA | 3..233 | 2..234 | 390 | 36 | Plus |
Dyak\ProsMA5-PA | 244 | GE11658-PA | 6..243 | 3..234 | 344 | 33.6 | Plus |
Translation from 146 to 895
> RE28175.hyp MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKK SVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNV EDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTE PSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEV AQSGQNNLEVAIMENGKPLKMLDTDVITDYVKIIEKEKEEELEKKKQKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prosalpha4-PA | 249 | CG3422-PA | 1..249 | 1..249 | 1257 | 100 | Plus |
Prosalpha4T1-PA | 249 | CG17268-PA | 1..249 | 1..249 | 958 | 75.1 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..249 | 809 | 60.4 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..249 | 809 | 60.4 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 3..233 | 2..234 | 368 | 36.4 | Plus |