Clone RE28280 Report

Search the DGRC for RE28280

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:282
Well:80
Vector:pFlc-1
Associated Gene/TranscriptCG7294-RA
Protein status:RE28280.pep: gold
Preliminary Size:527
Sequenced Size:553

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7294 2002-01-01 Sim4 clustering to Release 2
CG7294 2002-01-09 Blastp of sequenced clone
CG7294 2003-01-01 Sim4 clustering to Release 3
CG7294 2008-04-29 Release 5.5 accounting
CG7294 2008-08-15 Release 5.9 accounting
CG7294 2008-12-18 5.12 accounting

Clone Sequence Records

RE28280.complete Sequence

553 bp (553 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075468

> RE28280.complete
GCCGTCAGTTCCAGCCCAGACAACCCAGCGATCGCACAGATAGAATCTAT
CAAACTCACAGAAGAATTCTCGCAATGAAGACTCTGATTGTTCTCGCTCT
TCTGGTGGCCGCCGTTTCGGCCCTACCGCAATTTGGATTCGGACGACCAG
GATTTGGTGGCGGATTCGGCGGCGGACCCTACGGCGGTGGCTTTGGCGGT
GGTCCATATGGCGGCGGCTTTGGCGGTGGTCCTTATGGCGGCGGTTTCGG
AGGTGGTCCATACGGCGGGGGATTCGGTAATCCCTATGGCGGCGGATTCG
GCGGTGGCAGGCGTCATGGCGGTGGACGCGGTGGTGGCGGTGGTGCTGCC
TCTGCCTCCGCATCTTCGTCAGCCTCTGCAGCTGGTGGTGGTGGCGGAGC
GGCCTCCTCATCCGCCTCTTCATCCGCCTCCGCAAGCGGTGGTGGTTTCT
ACGGATAAGCTGCCAGAGAGCGGATTATCTAGAAGTTAAGTTATTGTTAA
TGTTAAAAAAGTCTGAAATAAAAAAATTTTAAAACACAAAAAAAAAAAAA
AAA

RE28280.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-RA 543 CG7294-RA 1..543 2..544 2685 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10687474..10688007 535..2 2670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10688727..10689269 544..2 2685 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10688727..10689269 544..2 2685 99.6 Minus
Blast to na_te.dros performed on 2019-03-16 12:59:34 has no hits.

RE28280.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:00:29 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10687472..10687663 346..537 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:01 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..384 75..458 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:31:07 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..384 75..458 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:43:02 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..384 75..458 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:58 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..384 75..458 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:49 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..384 75..458 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:46 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..535 2..537 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:31:07 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..535 2..537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:43:02 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..537 1..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:58 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..535 2..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:49 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
CG7294-RA 1..537 1..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:29 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10688734..10689269 1..537 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:29 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10688734..10689269 1..537 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:00:29 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10688734..10689269 1..537 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:43:02 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10688734..10689269 1..537 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:52 Download gff for RE28280.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10688734..10689269 1..537 99   Minus

RE28280.hyp Sequence

Translation from 2 to 457

> RE28280.hyp
RQFQPRQPSDRTDRIYQTHRRILAMKTLIVLALLVAAVSALPQFGFGRPG
FGGGFGGGPYGGGFGGGPYGGGFGGGPYGGGFGGGPYGGGFGNPYGGGFG
GGRRHGGGRGGGGGAASASASSSASAAGGGGGAASSSASSSASASGGGFY
G*

RE28280.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-PA 127 CG7294-PA 1..127 25..151 689 100 Plus
CG7296-PB 161 CG7296-PB 1..161 25..151 368 58.9 Plus
CG7296-PA 161 CG7296-PA 1..161 25..151 368 58.9 Plus
TwdlT-PA 286 CG5812-PA 1..126 25..148 261 47 Plus
CG17108-PA 342 CG17108-PA 219..342 45..151 255 50.4 Plus
TwdlT-PA 286 CG5812-PA 43..129 45..119 218 56.2 Plus
TwdlT-PA 286 CG5812-PA 51..127 45..132 212 56.8 Plus

RE28280.pep Sequence

Translation from 74 to 457

> RE28280.pep
MKTLIVLALLVAAVSALPQFGFGRPGFGGGFGGGPYGGGFGGGPYGGGFG
GGPYGGGFGGGPYGGGFGNPYGGGFGGGRRHGGGRGGGGGAASASASSSA
SAAGGGGGAASSSASSSASASGGGFYG*

RE28280.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7294-PA 127 CG7294-PA 1..127 1..127 689 100 Plus
CG7296-PB 161 CG7296-PB 1..161 1..127 368 58.9 Plus
CG7296-PA 161 CG7296-PA 1..161 1..127 368 58.9 Plus
TwdlT-PA 286 CG5812-PA 1..126 1..124 261 47 Plus
CG17108-PA 342 CG17108-PA 219..342 21..127 255 50.4 Plus
CG14191-PA 193 CG14191-PA 55..181 21..123 233 42.6 Plus
Cpr47Ef-PC 612 CG13214-PC 343..474 23..127 232 43.2 Plus
CG17108-PA 342 CG17108-PA 102..212 21..127 230 49.6 Plus
CG8157-PB 113 CG8157-PB 1..94 1..90 230 62.2 Plus
CG8157-PA 113 CG8157-PA 1..94 1..90 230 62.2 Plus
CG14191-PA 193 CG14191-PA 48..181 23..122 230 44 Plus
Cpr47Ef-PD 601 CG13214-PD 343..458 23..127 230 45.7 Plus
CG14191-PA 193 CG14191-PA 27..162 12..127 229 42 Plus
CG15597-PB 149 CG15597-PB 1..141 1..127 229 40.3 Plus
Cpr47Ef-PD 601 CG13214-PD 375..493 21..127 229 46.7 Plus
CG7299-PC 177 CG7299-PC 1..162 1..123 228 43.5 Plus
CG7299-PA 177 CG7299-PA 1..162 1..123 228 43.5 Plus
Cpr47Ef-PC 612 CG13214-PC 307..444 21..127 228 43.2 Plus
Cpr47Ef-PD 601 CG13214-PD 307..444 21..127 228 43.2 Plus
Cpr47Ef-PC 612 CG13214-PC 221..356 5..124 226 44.2 Plus
Cpr47Ef-PD 601 CG13214-PD 221..356 5..124 226 44.2 Plus
Fib-PA 344 CG9888-PA 2..107 23..127 225 51.4 Plus
Cpr47Ef-PC 612 CG13214-PC 262..377 21..127 223 43.6 Plus
Cpr47Ef-PD 601 CG13214-PD 262..377 21..127 223 43.6 Plus
Cpr47Ef-PC 612 CG13214-PC 375..503 21..127 222 42.6 Plus
Cpr47Ef-PC 612 CG13214-PC 30..149 12..126 219 47.9 Plus
Cpr47Ef-PC 612 CG13214-PC 290..407 21..127 219 46.3 Plus
Cpr47Ef-PC 612 CG13214-PC 441..540 21..108 219 51 Plus
Cpr47Ef-PD 601 CG13214-PD 290..407 21..127 219 46.3 Plus
Cpr47Ef-PD 601 CG13214-PD 30..149 12..126 219 47.9 Plus
TwdlT-PA 286 CG5812-PA 43..129 21..95 218 56.2 Plus
CG17108-PA 342 CG17108-PA 133..231 21..127 215 49.1 Plus
Cpr47Ef-PC 612 CG13214-PC 408..522 23..123 213 46.6 Plus
TwdlT-PA 286 CG5812-PA 51..127 21..108 212 56.8 Plus
Cpr47Ef-PD 601 CG13214-PD 435..529 23..108 212 53.1 Plus
CG5172-PD 172 CG5172-PD 8..129 4..122 212 43.9 Plus
CG14191-PA 193 CG14191-PA 77..192 11..112 210 44.5 Plus
CG17108-PA 342 CG17108-PA 1..148 1..127 209 40.3 Plus
Cpr47Ef-PC 612 CG13214-PC 471..584 21..124 209 43.1 Plus
Cpr47Ef-PD 601 CG13214-PD 408..515 23..124 209 44.5 Plus
CG5172-PD 172 CG5172-PD 1..158 1..127 209 37.2 Plus
CG17108-PA 342 CG17108-PA 149..262 21..127 206 42.9 Plus
Cpr47Ef-PC 612 CG13214-PC 299..423 21..127 206 43.7 Plus
Cpr47Ef-PD 601 CG13214-PD 299..423 21..127 206 43.7 Plus
Cpr47Ef-PD 601 CG13214-PD 462..573 23..124 206 43 Plus
CG12523-PB 250 CG12523-PB 9..146 13..125 204 42.8 Plus
CG12523-PA 250 CG12523-PA 9..146 13..125 204 42.8 Plus
CG13376-PB 200 CG13376-PB 1..161 1..124 203 37.3 Plus
CG17108-PA 342 CG17108-PA 47..161 21..124 200 41.7 Plus
Fib-PA 344 CG9888-PA 21..108 21..105 199 51.1 Plus
Listericin-PA 121 CG9080-PA 1..119 1..105 198 44.4 Plus
Hrb87F-PE 385 CG12749-PE 228..351 21..125 198 41.9 Plus
Hrb87F-PD 385 CG12749-PD 228..351 21..125 198 41.9 Plus
Hrb87F-PC 385 CG12749-PC 228..351 21..125 198 41.9 Plus
Hrb87F-PA 385 CG12749-PA 228..351 21..125 198 41.9 Plus
CG17108-PA 342 CG17108-PA 56..167 21..127 197 46.1 Plus
CG14191-PA 193 CG14191-PA 9..163 13..127 196 36.9 Plus
CG11458-PA 98 CG11458-PA 1..97 1..107 195 45.9 Plus
CG9757-PB 127 CG9757-PB 48..126 19..90 195 61.9 Plus
CG9757-PA 127 CG9757-PA 48..126 19..90 195 61.9 Plus
CG10598-PC 173 CG10598-PC 1..159 1..127 194 35.8 Plus
CG10598-PA 173 CG10598-PA 1..159 1..127 194 35.8 Plus
CG13376-PC 193 CG13376-PC 6..154 12..124 194 36.9 Plus
CG13376-PD 204 CG13376-PD 17..165 12..124 194 36.9 Plus
CG10597-PB 200 CG10597-PB 30..160 21..127 192 38.6 Plus
Fib-PA 344 CG9888-PA 12..102 21..110 191 51.6 Plus
Cpr47Ef-PC 612 CG13214-PC 235..327 37..127 188 45.2 Plus
Cpr47Ef-PD 601 CG13214-PD 235..327 37..127 188 45.2 Plus
Cpr47Ef-PC 612 CG13214-PC 7..125 4..122 187 40.9 Plus
Cpr47Ef-PD 601 CG13214-PD 7..125 4..122 187 40.9 Plus
CG5070-PA 209 CG5070-PA 1..152 1..127 187 35.2 Plus
CG14327-PB 153 CG14327-PB 60..150 23..107 186 50.5 Plus
CG14327-PA 153 CG14327-PA 60..150 23..107 186 50.5 Plus
CG10918-PA 183 CG10918-PA 1..155 1..121 185 40.4 Plus
sqd-PD 178 CG16901-PD 90..170 26..107 184 47.7 Plus
CG2150-PA 188 CG2150-PA 5..166 3..126 184 36 Plus
sqd-PB 344 CG16901-PB 256..336 26..107 184 47.7 Plus
Hrb87F-PE 385 CG12749-PE 246..380 21..127 183 36.9 Plus
Hrb87F-PD 385 CG12749-PD 246..380 21..127 183 36.9 Plus
Hrb87F-PC 385 CG12749-PC 246..380 21..127 183 36.9 Plus
Hrb87F-PA 385 CG12749-PA 246..380 21..127 183 36.9 Plus
Hrb87F-PE 385 CG12749-PE 201..309 28..124 180 42.7 Plus
Hrb87F-PD 385 CG12749-PD 201..309 28..124 180 42.7 Plus
Hrb87F-PC 385 CG12749-PC 201..309 28..124 180 42.7 Plus
Hrb87F-PA 385 CG12749-PA 201..309 28..124 180 42.7 Plus
CG4038-PA 237 CG4038-PA 2..60 21..91 180 62 Plus
bel-PA 798 CG9748-PA 674..792 6..100 180 42.9 Plus
CG13376-PD 204 CG13376-PD 1..132 1..124 179 35.1 Plus
Hrb87F-PE 385 CG12749-PE 212..327 23..124 179 42.2 Plus
Hrb87F-PD 385 CG12749-PD 212..327 23..124 179 42.2 Plus
Hrb87F-PC 385 CG12749-PC 212..327 23..124 179 42.2 Plus
Hrb87F-PA 385 CG12749-PA 212..327 23..124 179 42.2 Plus
sqd-PD 178 CG16901-PD 97..170 21..90 179 53.3 Plus
sqd-PB 344 CG16901-PB 263..336 21..90 179 53.3 Plus
CG9757-PB 127 CG9757-PB 49..124 27..108 178 57.6 Plus
CG9757-PA 127 CG9757-PA 49..124 27..108 178 57.6 Plus
Hrb87F-PE 385 CG12749-PE 280..381 21..108 178 45.6 Plus
Hrb87F-PD 385 CG12749-PD 280..381 21..108 178 45.6 Plus
Hrb87F-PC 385 CG12749-PC 280..381 21..108 178 45.6 Plus
Hrb87F-PA 385 CG12749-PA 280..381 21..108 178 45.6 Plus
CG13376-PB 200 CG13376-PB 62..186 23..127 177 38.6 Plus
CG10597-PB 200 CG10597-PB 1..154 1..127 177 35.9 Plus
caz-PD 355 CG3606-PD 176..327 21..124 176 37.5 Plus
CG5070-PA 209 CG5070-PA 39..191 21..125 175 32.7 Plus
CG5172-PC 106 CG5172-PC 1..95 1..93 175 48.5 Plus
Edg91-PB 151 CG7539-PB 27..140 28..127 174 44.3 Plus
Edg91-PA 159 CG7539-PA 35..148 28..127 174 44.3 Plus
Cpr47Ef-PC 612 CG13214-PC 501..598 21..124 172 43.3 Plus
Cpr47Ef-PD 601 CG13214-PD 490..587 21..124 172 43.3 Plus
CG4038-PA 237 CG4038-PA 159..233 18..90 171 53.3 Plus
CG5172-PC 106 CG5172-PC 8..106 4..103 170 46.5 Plus
CG9877-PA 88 CG9877-PA 8..85 4..108 170 44.8 Plus
CG17105-PB 103 CG17105-PB 1..100 1..109 169 44.7 Plus
CG17105-PA 103 CG17105-PA 1..100 1..109 169 44.7 Plus
CG10598-PC 173 CG10598-PC 53..172 26..123 168 39.2 Plus
CG10598-PA 173 CG10598-PA 53..172 26..123 168 39.2 Plus
CG10597-PB 200 CG10597-PB 76..198 20..126 168 37.8 Plus
CG5172-PC 106 CG5172-PC 21..95 34..119 168 46.5 Plus
CG42586-PB 89 CG42586-PB 1..80 1..69 168 56 Plus
CG42586-PA 89 CG42586-PA 1..80 1..69 168 56 Plus
CG31775-PB 89 CG31775-PB 1..80 1..69 168 56 Plus
CG31775-PA 89 CG31775-PA 1..80 1..69 168 56 Plus
CG13376-PC 193 CG13376-PC 58..179 23..127 167 40.7 Plus
CG13376-PD 204 CG13376-PD 69..190 23..127 167 40.7 Plus
CG15597-PB 149 CG15597-PB 69..143 26..93 165 48.7 Plus
CG12523-PB 250 CG12523-PB 80..201 23..124 165 39.8 Plus
CG12523-PA 250 CG12523-PA 80..201 23..124 165 39.8 Plus
caz-PD 355 CG3606-PD 170..296 37..126 165 35.4 Plus
caz-PD 355 CG3606-PD 263..336 26..90 163 51.9 Plus
CG12523-PB 250 CG12523-PB 1..103 1..127 162 38.6 Plus
CG12523-PA 250 CG12523-PA 1..103 1..127 162 38.6 Plus
CG11458-PA 98 CG11458-PA 21..87 38..108 162 52.1 Plus
Edg91-PB 151 CG7539-PB 49..150 21..127 162 41.1 Plus
Edg91-PA 159 CG7539-PA 57..158 21..127 162 41.1 Plus
CG11458-PA 98 CG11458-PA 21..97 37..108 160 46.8 Plus
caz-PD 355 CG3606-PD 266..349 38..124 160 42.5 Plus
CG13376-PB 200 CG13376-PB 80..192 21..123 155 35.4 Plus
CG13376-PC 193 CG13376-PC 73..185 21..123 155 35.4 Plus
CG13376-PD 204 CG13376-PD 84..196 21..123 155 35.4 Plus
CG5172-PD 172 CG5172-PD 73..171 26..106 154 42.4 Plus
CG9757-PB 127 CG9757-PB 49..127 45..127 153 46.4 Plus
CG9757-PA 127 CG9757-PA 49..127 45..127 153 46.4 Plus
Hrb87F-PE 385 CG12749-PE 201..295 37..127 153 38.9 Plus
Hrb87F-PD 385 CG12749-PD 201..295 37..127 153 38.9 Plus
Hrb87F-PC 385 CG12749-PC 201..295 37..127 153 38.9 Plus
Hrb87F-PA 385 CG12749-PA 201..295 37..127 153 38.9 Plus
CG5070-PA 209 CG5070-PA 86..207 26..123 153 35.5 Plus
CG15597-PB 149 CG15597-PB 59..144 11..76 152 42 Plus
CG13376-PB 200 CG13376-PB 76..198 26..122 151 35.8 Plus
CG13376-PC 193 CG13376-PC 69..191 26..122 151 35.8 Plus
CG13376-PD 204 CG13376-PD 80..202 26..122 151 35.8 Plus
CG4038-PA 237 CG4038-PA 173..235 23..90 151 54.9 Plus
bel-PA 798 CG9748-PA 697..783 39..124 151 41.4 Plus
CG12523-PB 250 CG12523-PB 97..232 26..125 150 36.8 Plus
CG12523-PA 250 CG12523-PA 97..232 26..125 150 36.8 Plus
sqd-PD 178 CG16901-PD 117..169 20..84 150 53.8 Plus
sqd-PB 344 CG16901-PB 283..335 20..84 150 53.8 Plus
CG10918-PA 183 CG10918-PA 20..100 46..127 148 43.9 Plus
CG4038-PA 237 CG4038-PA 180..235 21..86 146 59.1 Plus
CG5172-PD 172 CG5172-PD 92..171 21..84 142 44.7 Plus
CG4038-PA 237 CG4038-PA 173..233 46..108 142 52.4 Plus
CG2150-PA 188 CG2150-PA 27..125 44..127 138 36 Plus
CG11458-PA 98 CG11458-PA 46..98 21..75 134 56.4 Plus