BDGP Sequence Production Resources |
Search the DGRC for RE28319
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 283 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2010-RA |
Protein status: | RE28319.pep: gold |
Preliminary Size: | 2239 |
Sequenced Size: | 1924 |
Gene | Date | Evidence |
---|---|---|
CG2010 | 2002-10-04 | Blastp of sequenced clone |
CG2010 | 2008-04-29 | Release 5.5 accounting |
CG2010 | 2008-08-15 | Release 5.9 accounting |
CG2010 | 2008-12-18 | 5.12 accounting |
1924 bp (1924 high quality bases) assembled on 2002-10-04
GenBank Submission: BT001595
> RE28319.complete GGCAGTAGCGCGAAAGTAGCTCGATACGACGGATATTCTCGCCTCGCAGG CAGAGCACGCGTAGTTTGCCCCGTGTGTAGCTATATTTTTTTTTTATATA AGCAAGTGGTTCCGAATCATCCACACCCAGCCATGGATATATCCACCGAT ATCTGGGGTCAGCTGGCCGTGGAGGCATCGCAGGTCTACCTCTCCGACGG CACAGTTCGCAGTCCCTTCGCCGATACGACCATTGAGAAGCTGCCGGACA AGGTGCTGCTGCACATCTTCTCGTATCTGTCGCACCGCGAGATCTGCCGC CTGGCCAGGATTTGCCGACGATGGCGGCAGATTGCATACGACACGCGGCT GTGGAAGAACGTGAGCCTGCGACCGGAGGTCTCCGGACTGCACGTGGGCT CGCTGGAGATGCTGCTGCAGCTGATCTCGGTGAGATTCGGACCGACTCTG CGCTACATCGAGCTGCCCATCGAGCTGATCACGCACACGGTGCTCCACGA ACTGTCCGCCAAGTGCCCCAATTTGACCCACATGCTGCTGGACTTCTCCA CAGCCATGCAGCTGCACGACTTCAGCGAGATGCAGGCCTTTCCCACCAAG CTGCGCTACATGTGCGTCTGCCTCTCGGAGGTGATCTTCATGGAGGGCTT CATGCGCAAAATCTACAACTTCATCAACGGCCTGGAGGTGCTGCATCTAA TTGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAGGAGATCTACGAGGTG ATCAACGTGCACAAGCTCAAGTCGGCCACGCCCAATTTGCGTGTGATCAA CCTGTACGGCATCAACTTCATCGATGACTCGCACATCGACGCCTTCAGCT CGAACTGCATCCAGCTGGAGTGCCTGGCCGTCAACTTCTGCAACAAAGTG ACCGGCTCCACCCTGAAGACCCTGATCCAGCGTTCCAAGCGCCTCACCTG CCTGCTCATGAACGGCACCAGCCTGAAGTCGGAGTTCGTCATGCAGGCCG AGTGGGACAAGTGCGCCCTGCAGGAGCTGGACATCACGGCCACCGATCTT TCGACCGAATGCCTCGTGGACATGCTGAGCAGGATCCCCAGCCTCAAGTT CCTCTCAGCCGGCCAGATCAATGGCTTCAACGACAGCGTTCTCAAGCAGT GGATGGAATCGGGCACCACCAGGTCGCTCATTTCCCTGGACTTGGACTCC TCGGACAACATCTCGGATGAGGGCCTGCTTAAGTTTATACAGCGCCAGGG TCATCAGCTGAGCGCCTGCTGTCTCTCGGGCATGCCCCACATCACCGACC AGCTGTGGATGAGCATCCTGCCCCTGCTGGGCAACTGCAAGATCATTGTT ATGGGCACCGCAGAGAAGCTGGGCGTCAACATCCACGTGGACCAGCTGAT GGACACCATCGCCTCGAATTGCGGCAACTTGGAGCGGCTGGAGCTGCGCT GGGATCCGGACAACCTGCGCTTCTCCGACAAGAGCCAGAAGGCCATCGAT ATTCTGCGCGTCAAGTGCCTCAAGCTGCGCTGCATGGTGCTCAGCGATGG TCGCTACTATGAGACGGTCAAGGCCAACTTTGAGCGTGCCGATCGCATCA CCGTGGTGCGCACCACCACCTGCTGCCGTGTGTCTCCCTATCACCTGCTC CGCAACTACAACGATTTGATTTTCAACTGAGCCTCTGAGGTTCAGAGCTG AAAGCCAAGAGAGGATTGGTAGCTTGCACTTACCCGGTTGCAGAGCTCTG GATGGGATTTACCCACAACAGGGCCGGAGGAGAAGCAATGTTTCTGTGTG TTTTCGCTTACAATAAGAGTGTTTTAATGTTTTCTGTATTTTCCGCTTCT TTCGTTTAATTACTTTAAATCTAAATAAACGTACATAGGTAATTTAAATA AAAACAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25320037..25320659 | 552..1174 | 3025 | 99 | Plus |
chr3R | 27901430 | chr3R | 25321212..25321577 | 1542..1907 | 1770 | 98.9 | Plus |
chr3R | 27901430 | chr3R | 25319651..25319976 | 228..553 | 1600 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 25319198..25319425 | 2..228 | 1090 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 25320946..25321155 | 1335..1544 | 960 | 97.1 | Plus |
chr3R | 27901430 | chr3R | 25320714..25320884 | 1171..1341 | 810 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29497385..29498007 | 552..1174 | 3115 | 100 | Plus |
3R | 32079331 | 3R | 29498560..29498925 | 1542..1907 | 1830 | 100 | Plus |
3R | 32079331 | 3R | 29496999..29497324 | 228..553 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 29496547..29496773 | 2..228 | 1135 | 100 | Plus |
3R | 32079331 | 3R | 29498294..29498503 | 1335..1544 | 1035 | 99.5 | Plus |
3R | 32079331 | 3R | 29498062..29498232 | 1171..1341 | 855 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29238216..29238838 | 552..1174 | 3115 | 100 | Plus |
3R | 31820162 | 3R | 29239391..29239756 | 1542..1907 | 1830 | 100 | Plus |
3R | 31820162 | 3R | 29237830..29238155 | 228..553 | 1630 | 100 | Plus |
3R | 31820162 | 3R | 29237378..29237604 | 2..228 | 1135 | 100 | Plus |
3R | 31820162 | 3R | 29239125..29239334 | 1335..1544 | 1035 | 99.5 | Plus |
3R | 31820162 | 3R | 29238893..29239063 | 1171..1341 | 855 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G5 | 4856 | G5 G5_DM 4856bp | 2601..2665 | 1405..1340 | 120 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25319652..25319976 | 229..553 | 99 | -> | Plus |
chr3R | 25319197..25319425 | 1..228 | 99 | -> | Plus |
chr3R | 25320039..25320657 | 554..1172 | 99 | -> | Plus |
chr3R | 25320716..25320883 | 1173..1340 | 98 | -> | Plus |
chr3R | 25320952..25321155 | 1341..1544 | 97 | -> | Plus |
chr3R | 25321215..25321577 | 1545..1908 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 1..1548 | 133..1680 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 1..1548 | 133..1680 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 1..1548 | 133..1680 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 1..1548 | 133..1680 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 1..1548 | 133..1680 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 2..1907 | 2..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 2..1907 | 2..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 6..1910 | 1..1905 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 2..1907 | 2..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2010-RA | 6..1910 | 1..1905 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29496546..29496773 | 1..228 | 99 | -> | Plus |
3R | 29497000..29497324 | 229..553 | 100 | -> | Plus |
3R | 29497387..29498005 | 554..1172 | 100 | -> | Plus |
3R | 29498064..29498231 | 1173..1340 | 100 | -> | Plus |
3R | 29498300..29498503 | 1341..1544 | 100 | -> | Plus |
3R | 29498563..29498925 | 1545..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29496546..29496773 | 1..228 | 99 | -> | Plus |
3R | 29497000..29497324 | 229..553 | 100 | -> | Plus |
3R | 29497387..29498005 | 554..1172 | 100 | -> | Plus |
3R | 29498064..29498231 | 1173..1340 | 100 | -> | Plus |
3R | 29498300..29498503 | 1341..1544 | 100 | -> | Plus |
3R | 29498563..29498925 | 1545..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29496546..29496773 | 1..228 | 99 | -> | Plus |
3R | 29497000..29497324 | 229..553 | 100 | -> | Plus |
3R | 29497387..29498005 | 554..1172 | 100 | -> | Plus |
3R | 29498064..29498231 | 1173..1340 | 100 | -> | Plus |
3R | 29498300..29498503 | 1341..1544 | 100 | -> | Plus |
3R | 29498563..29498925 | 1545..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25322268..25322495 | 1..228 | 99 | -> | Plus |
arm_3R | 25322722..25323046 | 229..553 | 100 | -> | Plus |
arm_3R | 25323109..25323727 | 554..1172 | 100 | -> | Plus |
arm_3R | 25323786..25323953 | 1173..1340 | 100 | -> | Plus |
arm_3R | 25324022..25324225 | 1341..1544 | 100 | -> | Plus |
arm_3R | 25324285..25324647 | 1545..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29237377..29237604 | 1..228 | 99 | -> | Plus |
3R | 29237831..29238155 | 229..553 | 100 | -> | Plus |
3R | 29238218..29238836 | 554..1172 | 100 | -> | Plus |
3R | 29238895..29239062 | 1173..1340 | 100 | -> | Plus |
3R | 29239131..29239334 | 1341..1544 | 100 | -> | Plus |
3R | 29239394..29239756 | 1545..1908 | 99 | Plus |
Translation from 0 to 1679
> RE28319.hyp RSSAKVARYDGYSRLAGRARVVCPVCSYIFFLYKQVVPNHPHPAMDISTD IWGQLAVEASQVYLSDGTVRSPFADTTIEKLPDKVLLHIFSYLSHREICR LARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISVRFGPTL RYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEMQAFPTK LRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEEEEIYEV INVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAVNFCNKV TGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELDITATDL STECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLISLDLDS SDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLGNCKIIV MGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDKSQKAID ILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRVSPYHLL RNYNDLIFN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2010-PA | 515 | CG2010-PA | 1..515 | 45..559 | 2685 | 100 | Plus |
CG2010-PC | 511 | CG2010-PC | 2..511 | 50..559 | 2529 | 95.5 | Plus |
CG2010-PB | 511 | CG2010-PB | 2..511 | 50..559 | 2529 | 95.5 | Plus |
Translation from 132 to 1679
> RE28319.pep MDISTDIWGQLAVEASQVYLSDGTVRSPFADTTIEKLPDKVLLHIFSYLS HREICRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISV RFGPTLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEM QAFPTKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEE EEIYEVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAV NFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELD ITATDLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLI SLDLDSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLG NCKIIVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDK SQKAIDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRV SPYHLLRNYNDLIFN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23347-PA | 512 | GF23347-PA | 2..512 | 6..515 | 2493 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11667-PA | 515 | GG11667-PA | 1..515 | 1..515 | 2740 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18900-PA | 511 | GH18900-PA | 2..511 | 6..515 | 2422 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2010-PA | 515 | CG2010-PA | 1..515 | 1..515 | 2685 | 100 | Plus |
CG2010-PC | 511 | CG2010-PC | 2..511 | 6..515 | 2529 | 95.5 | Plus |
CG2010-PB | 511 | CG2010-PB | 2..511 | 6..515 | 2529 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23115-PA | 510 | GI23115-PA | 2..510 | 6..515 | 2319 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13891-PA | 510 | GL13891-PA | 2..510 | 6..515 | 2466 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15183-PB | 515 | GA15183-PB | 1..515 | 1..515 | 2699 | 97.5 | Plus |
Dpse\GA15183-PA | 510 | GA15183-PA | 2..510 | 6..515 | 2466 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12789-PA | 511 | GM12789-PA | 2..511 | 6..515 | 2498 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21439-PA | 511 | GD21439-PA | 2..511 | 6..515 | 2498 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10605-PA | 512 | GJ10605-PA | 2..512 | 6..515 | 2440 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11898-PA | 511 | GK11898-PA | 2..511 | 6..515 | 2493 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23855-PA | 511 | GE23855-PA | 2..511 | 6..515 | 2498 | 95.3 | Plus |