Clone RE28319 Report

Search the DGRC for RE28319

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:283
Well:19
Vector:pFlc-1
Associated Gene/TranscriptCG2010-RA
Protein status:RE28319.pep: gold
Preliminary Size:2239
Sequenced Size:1924

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2010 2002-10-04 Blastp of sequenced clone
CG2010 2008-04-29 Release 5.5 accounting
CG2010 2008-08-15 Release 5.9 accounting
CG2010 2008-12-18 5.12 accounting

Clone Sequence Records

RE28319.complete Sequence

1924 bp (1924 high quality bases) assembled on 2002-10-04

GenBank Submission: BT001595

> RE28319.complete
GGCAGTAGCGCGAAAGTAGCTCGATACGACGGATATTCTCGCCTCGCAGG
CAGAGCACGCGTAGTTTGCCCCGTGTGTAGCTATATTTTTTTTTTATATA
AGCAAGTGGTTCCGAATCATCCACACCCAGCCATGGATATATCCACCGAT
ATCTGGGGTCAGCTGGCCGTGGAGGCATCGCAGGTCTACCTCTCCGACGG
CACAGTTCGCAGTCCCTTCGCCGATACGACCATTGAGAAGCTGCCGGACA
AGGTGCTGCTGCACATCTTCTCGTATCTGTCGCACCGCGAGATCTGCCGC
CTGGCCAGGATTTGCCGACGATGGCGGCAGATTGCATACGACACGCGGCT
GTGGAAGAACGTGAGCCTGCGACCGGAGGTCTCCGGACTGCACGTGGGCT
CGCTGGAGATGCTGCTGCAGCTGATCTCGGTGAGATTCGGACCGACTCTG
CGCTACATCGAGCTGCCCATCGAGCTGATCACGCACACGGTGCTCCACGA
ACTGTCCGCCAAGTGCCCCAATTTGACCCACATGCTGCTGGACTTCTCCA
CAGCCATGCAGCTGCACGACTTCAGCGAGATGCAGGCCTTTCCCACCAAG
CTGCGCTACATGTGCGTCTGCCTCTCGGAGGTGATCTTCATGGAGGGCTT
CATGCGCAAAATCTACAACTTCATCAACGGCCTGGAGGTGCTGCATCTAA
TTGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAGGAGATCTACGAGGTG
ATCAACGTGCACAAGCTCAAGTCGGCCACGCCCAATTTGCGTGTGATCAA
CCTGTACGGCATCAACTTCATCGATGACTCGCACATCGACGCCTTCAGCT
CGAACTGCATCCAGCTGGAGTGCCTGGCCGTCAACTTCTGCAACAAAGTG
ACCGGCTCCACCCTGAAGACCCTGATCCAGCGTTCCAAGCGCCTCACCTG
CCTGCTCATGAACGGCACCAGCCTGAAGTCGGAGTTCGTCATGCAGGCCG
AGTGGGACAAGTGCGCCCTGCAGGAGCTGGACATCACGGCCACCGATCTT
TCGACCGAATGCCTCGTGGACATGCTGAGCAGGATCCCCAGCCTCAAGTT
CCTCTCAGCCGGCCAGATCAATGGCTTCAACGACAGCGTTCTCAAGCAGT
GGATGGAATCGGGCACCACCAGGTCGCTCATTTCCCTGGACTTGGACTCC
TCGGACAACATCTCGGATGAGGGCCTGCTTAAGTTTATACAGCGCCAGGG
TCATCAGCTGAGCGCCTGCTGTCTCTCGGGCATGCCCCACATCACCGACC
AGCTGTGGATGAGCATCCTGCCCCTGCTGGGCAACTGCAAGATCATTGTT
ATGGGCACCGCAGAGAAGCTGGGCGTCAACATCCACGTGGACCAGCTGAT
GGACACCATCGCCTCGAATTGCGGCAACTTGGAGCGGCTGGAGCTGCGCT
GGGATCCGGACAACCTGCGCTTCTCCGACAAGAGCCAGAAGGCCATCGAT
ATTCTGCGCGTCAAGTGCCTCAAGCTGCGCTGCATGGTGCTCAGCGATGG
TCGCTACTATGAGACGGTCAAGGCCAACTTTGAGCGTGCCGATCGCATCA
CCGTGGTGCGCACCACCACCTGCTGCCGTGTGTCTCCCTATCACCTGCTC
CGCAACTACAACGATTTGATTTTCAACTGAGCCTCTGAGGTTCAGAGCTG
AAAGCCAAGAGAGGATTGGTAGCTTGCACTTACCCGGTTGCAGAGCTCTG
GATGGGATTTACCCACAACAGGGCCGGAGGAGAAGCAATGTTTCTGTGTG
TTTTCGCTTACAATAAGAGTGTTTTAATGTTTTCTGTATTTTCCGCTTCT
TTCGTTTAATTACTTTAAATCTAAATAAACGTACATAGGTAATTTAAATA
AAAACAAGAAAAAAAAAAAAAAAA

RE28319.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RA 1928 CG2010-RA 21..1926 2..1907 9530 100 Plus
CG2010.b 2020 CG2010.b 339..2018 228..1907 8400 100 Plus
CG2010.d 1984 CG2010.d 303..1982 228..1907 8400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25320037..25320659 552..1174 3025 99 Plus
chr3R 27901430 chr3R 25321212..25321577 1542..1907 1770 98.9 Plus
chr3R 27901430 chr3R 25319651..25319976 228..553 1600 99.4 Plus
chr3R 27901430 chr3R 25319198..25319425 2..228 1090 99.6 Plus
chr3R 27901430 chr3R 25320946..25321155 1335..1544 960 97.1 Plus
chr3R 27901430 chr3R 25320714..25320884 1171..1341 810 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29497385..29498007 552..1174 3115 100 Plus
3R 32079331 3R 29498560..29498925 1542..1907 1830 100 Plus
3R 32079331 3R 29496999..29497324 228..553 1630 100 Plus
3R 32079331 3R 29496547..29496773 2..228 1135 100 Plus
3R 32079331 3R 29498294..29498503 1335..1544 1035 99.5 Plus
3R 32079331 3R 29498062..29498232 1171..1341 855 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29238216..29238838 552..1174 3115 100 Plus
3R 31820162 3R 29239391..29239756 1542..1907 1830 100 Plus
3R 31820162 3R 29237830..29238155 228..553 1630 100 Plus
3R 31820162 3R 29237378..29237604 2..228 1135 100 Plus
3R 31820162 3R 29239125..29239334 1335..1544 1035 99.5 Plus
3R 31820162 3R 29238893..29239063 1171..1341 855 100 Plus
Blast to na_te.dros performed 2019-03-15 19:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2601..2665 1405..1340 120 66.7 Minus

RE28319.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:45:13 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25319652..25319976 229..553 99 -> Plus
chr3R 25319197..25319425 1..228 99 -> Plus
chr3R 25320039..25320657 554..1172 99 -> Plus
chr3R 25320716..25320883 1173..1340 98 -> Plus
chr3R 25320952..25321155 1341..1544 97 -> Plus
chr3R 25321215..25321577 1545..1908 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:06 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 1..1548 133..1680 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:40 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 1..1548 133..1680 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:56:26 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 1..1548 133..1680 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:03:33 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 1..1548 133..1680 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:50 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 1..1548 133..1680 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:35:01 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 2..1907 2..1908 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:40 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 2..1907 2..1908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:56:26 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 6..1910 1..1905 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:03:33 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 2..1907 2..1908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:50 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RA 6..1910 1..1905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:13 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29496546..29496773 1..228 99 -> Plus
3R 29497000..29497324 229..553 100 -> Plus
3R 29497387..29498005 554..1172 100 -> Plus
3R 29498064..29498231 1173..1340 100 -> Plus
3R 29498300..29498503 1341..1544 100 -> Plus
3R 29498563..29498925 1545..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:13 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29496546..29496773 1..228 99 -> Plus
3R 29497000..29497324 229..553 100 -> Plus
3R 29497387..29498005 554..1172 100 -> Plus
3R 29498064..29498231 1173..1340 100 -> Plus
3R 29498300..29498503 1341..1544 100 -> Plus
3R 29498563..29498925 1545..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:13 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29496546..29496773 1..228 99 -> Plus
3R 29497000..29497324 229..553 100 -> Plus
3R 29497387..29498005 554..1172 100 -> Plus
3R 29498064..29498231 1173..1340 100 -> Plus
3R 29498300..29498503 1341..1544 100 -> Plus
3R 29498563..29498925 1545..1908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:56:26 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25322268..25322495 1..228 99 -> Plus
arm_3R 25322722..25323046 229..553 100 -> Plus
arm_3R 25323109..25323727 554..1172 100 -> Plus
arm_3R 25323786..25323953 1173..1340 100 -> Plus
arm_3R 25324022..25324225 1341..1544 100 -> Plus
arm_3R 25324285..25324647 1545..1908 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:20 Download gff for RE28319.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29237377..29237604 1..228 99 -> Plus
3R 29237831..29238155 229..553 100 -> Plus
3R 29238218..29238836 554..1172 100 -> Plus
3R 29238895..29239062 1173..1340 100 -> Plus
3R 29239131..29239334 1341..1544 100 -> Plus
3R 29239394..29239756 1545..1908 99   Plus

RE28319.hyp Sequence

Translation from 0 to 1679

> RE28319.hyp
RSSAKVARYDGYSRLAGRARVVCPVCSYIFFLYKQVVPNHPHPAMDISTD
IWGQLAVEASQVYLSDGTVRSPFADTTIEKLPDKVLLHIFSYLSHREICR
LARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISVRFGPTL
RYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEMQAFPTK
LRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEEEEIYEV
INVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAVNFCNKV
TGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELDITATDL
STECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLISLDLDS
SDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLGNCKIIV
MGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDKSQKAID
ILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRVSPYHLL
RNYNDLIFN*

RE28319.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PA 515 CG2010-PA 1..515 45..559 2685 100 Plus
CG2010-PC 511 CG2010-PC 2..511 50..559 2529 95.5 Plus
CG2010-PB 511 CG2010-PB 2..511 50..559 2529 95.5 Plus

RE28319.pep Sequence

Translation from 132 to 1679

> RE28319.pep
MDISTDIWGQLAVEASQVYLSDGTVRSPFADTTIEKLPDKVLLHIFSYLS
HREICRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISV
RFGPTLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEM
QAFPTKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEE
EEIYEVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAV
NFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELD
ITATDLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLI
SLDLDSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLG
NCKIIVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDK
SQKAIDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRV
SPYHLLRNYNDLIFN*

RE28319.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23347-PA 512 GF23347-PA 2..512 6..515 2493 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11667-PA 515 GG11667-PA 1..515 1..515 2740 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18900-PA 511 GH18900-PA 2..511 6..515 2422 91.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PA 515 CG2010-PA 1..515 1..515 2685 100 Plus
CG2010-PC 511 CG2010-PC 2..511 6..515 2529 95.5 Plus
CG2010-PB 511 CG2010-PB 2..511 6..515 2529 95.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23115-PA 510 GI23115-PA 2..510 6..515 2319 92.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13891-PA 510 GL13891-PA 2..510 6..515 2466 93.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15183-PB 515 GA15183-PB 1..515 1..515 2699 97.5 Plus
Dpse\GA15183-PA 510 GA15183-PA 2..510 6..515 2466 93.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12789-PA 511 GM12789-PA 2..511 6..515 2498 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21439-PA 511 GD21439-PA 2..511 6..515 2498 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10605-PA 512 GJ10605-PA 2..512 6..515 2440 91.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11898-PA 511 GK11898-PA 2..511 6..515 2493 94.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23855-PA 511 GE23855-PA 2..511 6..515 2498 95.3 Plus