Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE28470.complete Sequence
2069 bp (2069 high quality bases) assembled on 2002-10-04
GenBank Submission: BT001596
> RE28470.complete
AGTGGCAGTTGACAGCGTCGGTTCGTGGATCAGCGATCGTGGATCGTGAT
TTTTTTTGGCCCGTCGCTCGCCAAGGTTAATTAGCCCAGATCCGAGATCG
AGATTGCGGAGAGACAGAGAGCGAAGATCACCATCTAGTGATGTCGTTTT
TTCGCAATATACGCTCCTCCCTCTCCTCGTCGTCGCGGGCCAAAAGCTCC
CGCTCCTCATCCCGCGATACGACACCGGTACGCTCCGGATCTCGTCCAGG
CAGCGTGATCAGCGGCGTGGGATCCGTGGGAGTTACCAGTCGCCGGGACT
CGACTACGAGCTCAACTTTGCAGCGCGGTGATACCTTTATAATGCCCAAT
TCGGAAGAGGAGGCGCCACCTTCGTCGAACACCTCCACTCTGGAGAAAAA
GTCGAAGAAGTCCAAGGTCTTTAGCAAATTCAGCACCTTCACCAAGCGCA
AGAAGACTCCGTCGCCCGAGGAAGTGGCCAGCTATGAGCATCATCCCAGT
GACACGGCCACGAATACGTACTACAAGTGGCGCAGCGATGGAGCGGACCG
TCTGCAGGACTACGATGCCCAGTCGGATCCGTTTAACTTCCTTTACGAGC
AGCACTCCAATCTGAGGGCCCTGCAAACGGGTGATTCCAGTGGTATCCAC
CGGCAGGCCAGCATTGGTTCCACTTCCAGTGGCAGCTTTGATTCATCCAC
CTACCGTAAGAGCAAAACTCCCACGCATTTGCGAGAGCAGCTGGAGCAGC
TTAAAACCCACTCCAACGACGATCTGCTGGAGGATCAGCAGCGGGAGGAG
GATGAGCGTGAGAAGTACAAGACAGTCACCCTAAATAGCTTTAGGAAGTC
CTTCAGGGACCGCTTGCTGCAGCAGCAGAAGGAAACGCCCCACAATCCCG
CCTGGTTTGTGGAAGTTCCCGGCCAGCCAACAACCACGAAACCTCTGGAA
CGTCGCGAGTCCAAGGAGAACCGTCCCGATTTCCTGGTCTTCGACAATGA
TAACTACCGCCCTCAGTCGCGTTCTCCACTCCGGGATCGTCCCTCTCGTT
CCGCCACCCGTTCTCCGGTGAAACGCAACGAAACTTTCCGGGTCACGCAA
CCCTCAGTGCGTCATATGTCGCCATCGCCGACACCCACACCTGCTCCCTC
CATTCGCATCGAGATCAAGAACTCCATATCACCGCATTCTCCGGGCAGAT
TTGTGCCCGTGGGCGTGGCCAAGCCCATGCCCACCACGGAGTACTATGCG
CAAAGACTGCTCGCGAATAGAACCAGCATGAGCCCCAGTCCAAGTCAAAA
CCAGGGCTCTCGATGGTACCGCCAGCAGAACTCACCCACCCGGTTGAGTG
TGGGTCACCAGCAGCAGCAGCACCAGCACCAGCCCAGCCACCTCAGCCAG
CAGCAAAAGGGAGGACGAACCCTGGTGCACATTGTATCCGACCAGAGTAA
GACCATGACGCCACCAACCCGAGGCAGGGCGCCAACAAGAATCCAGCTGT
ATGACAATAAACCACAGAGTAGACCACAGGCAACGACCTACTTTGGCGGC
CACTACAATGCACCTGTTAAGCCCGGCCCGCGATCAGCATCCACTGGTGG
ACCCACCGTTTATCTGGGGCGTCGCGAACCACCAATGACACGTGCCACCA
CCACCACCAACGCCACCACCAGCAACAGAAGCATCGCCAACAGCACCACC
GCCCACATGGCCGCCCCCGTGCCACGACGCAACCGTTCGCCGATCAAAAT
GCCCTGGCGGTAGGCGTTAACCGAATATCTTATATAGAGATATGTGTATG
TCATATTGCCAATCGAGAATCAAGAATGAGTGGATGACATATATAGCTGT
TCTTTCCAAAGTGACAAAGTCGTCGAAGTTGCGTCATTATCAGAGCTGGG
AGCTCAGCTTTGCCAACGTTGTTTGTGCCCCTCCGATAATGGGCAAATAA
ATGATTTATGTAGCCCCATCAGTCCGAACAATTCGTATCGTGTGTTGTGA
ACTTTTTCTACGTAAAATTATTTTTAAGTAAATACAAAAATAAACGACAA
AAAAGAAAAAAAAAAAAAA
RE28470.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32170-RA | 2054 | CG32170-RA | 4..2051 | 4..2051 | 10240 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 16866807..16868854 | 4..2051 | 10030 | 99.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16877322..16879369 | 4..2051 | 10240 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 16870422..16872469 | 4..2051 | 10240 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 04:55:12 has no hits.
RE28470.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:56:01 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 16866804..16868836 | 1..2033 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:12 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..1623 | 141..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:24 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..1623 | 141..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:03 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..1623 | 141..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:34 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..1623 | 141..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:47 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..1623 | 141..1763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:01:15 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..2033 | 1..2033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:24 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..2033 | 1..2033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:03 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 11..2043 | 1..2033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:34 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 1..2033 | 1..2033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:47 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32170-RA | 11..2043 | 1..2033 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:01 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16877319..16879351 | 1..2033 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:01 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16877319..16879351 | 1..2033 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:01 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16877319..16879351 | 1..2033 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:03 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16870419..16872451 | 1..2033 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:12:47 Download gff for
RE28470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16870419..16872451 | 1..2033 | 99 | | Plus |
RE28470.hyp Sequence
Translation from 140 to 1762
> RE28470.hyp
MSFFRNIRSSLSSSSRAKSSRSSSRDTTPVRSGSRPGSVISGVGSVGVTS
RRDSTTSSTLQRGDTFIMPNSEEEAPPSSNTSTLEKKSKKSKVFSKFSTF
TKRKKTPSPEEVASYEHHPSDTATNTYYKWRSDGADRLQDYDAQSDPFNF
LYEQHSNLRALQTGDSSGIHRQASIGSTSSGSFDSSTYRKSKTPTHLREQ
LEQLKTHSNDDLLEDQQREEDEREKYKTVTLNSFRKSFRDRLLQQQKETP
HNPAWFVEVPGQPTTTKPLERRESKENRPDFLVFDNDNYRPQSRSPLRDR
PSRSATRSPVKRNETFRVTQPSVRHMSPSPTPTPAPSIRIEIKNSISPHS
PGRFVPVGVAKPMPTTEYYAQRLLANRTSMSPSPSQNQGSRWYRQQNSPT
RLSVGHQQQQHQHQPSHLSQQQKGGRTLVHIVSDQSKTMTPPTRGRAPTR
IQLYDNKPQSRPQATTYFGGHYNAPVKPGPRSASTGGPTVYLGRREPPMT
RATTTTNATTSNRSIANSTTAHMAAPVPRRNRSPIKMPWR*
RE28470.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32170-PA | 540 | CG32170-PA | 1..540 | 1..540 | 2825 | 100 | Plus |
RE28470.pep Sequence
Translation from 140 to 1762
> RE28470.pep
MSFFRNIRSSLSSSSRAKSSRSSSRDTTPVRSGSRPGSVISGVGSVGVTS
RRDSTTSSTLQRGDTFIMPNSEEEAPPSSNTSTLEKKSKKSKVFSKFSTF
TKRKKTPSPEEVASYEHHPSDTATNTYYKWRSDGADRLQDYDAQSDPFNF
LYEQHSNLRALQTGDSSGIHRQASIGSTSSGSFDSSTYRKSKTPTHLREQ
LEQLKTHSNDDLLEDQQREEDEREKYKTVTLNSFRKSFRDRLLQQQKETP
HNPAWFVEVPGQPTTTKPLERRESKENRPDFLVFDNDNYRPQSRSPLRDR
PSRSATRSPVKRNETFRVTQPSVRHMSPSPTPTPAPSIRIEIKNSISPHS
PGRFVPVGVAKPMPTTEYYAQRLLANRTSMSPSPSQNQGSRWYRQQNSPT
RLSVGHQQQQHQHQPSHLSQQQKGGRTLVHIVSDQSKTMTPPTRGRAPTR
IQLYDNKPQSRPQATTYFGGHYNAPVKPGPRSASTGGPTVYLGRREPPMT
RATTTTNATTSNRSIANSTTAHMAAPVPRRNRSPIKMPWR*
RE28470.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32170-PA | 540 | CG32170-PA | 1..540 | 1..540 | 2825 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL20856-PA | 432 | GL20856-PA | 1..239 | 1..248 | 791 | 78 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16730-PB | 579 | GA16730-PB | 1..579 | 1..540 | 1676 | 68.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25669-PA | 538 | GM25669-PA | 1..538 | 1..540 | 2689 | 95.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17643-PA | 297 | GD17643-PA | 1..297 | 68..364 | 1509 | 96.3 | Plus |