Clone RE28470 Report

Search the DGRC for RE28470

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:284
Well:70
Vector:pFlc-1
Associated Gene/TranscriptCG32170-RA
Protein status:RE28470.pep: gold
Preliminary Size:3007
Sequenced Size:2069

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32170 2002-10-04 Blastp of sequenced clone
CG32170 2003-01-01 Sim4 clustering to Release 3
CG32170 2008-04-29 Release 5.5 accounting
CG32170 2008-08-15 Release 5.9 accounting
CG32170 2008-12-18 5.12 accounting

Clone Sequence Records

RE28470.complete Sequence

2069 bp (2069 high quality bases) assembled on 2002-10-04

GenBank Submission: BT001596

> RE28470.complete
AGTGGCAGTTGACAGCGTCGGTTCGTGGATCAGCGATCGTGGATCGTGAT
TTTTTTTGGCCCGTCGCTCGCCAAGGTTAATTAGCCCAGATCCGAGATCG
AGATTGCGGAGAGACAGAGAGCGAAGATCACCATCTAGTGATGTCGTTTT
TTCGCAATATACGCTCCTCCCTCTCCTCGTCGTCGCGGGCCAAAAGCTCC
CGCTCCTCATCCCGCGATACGACACCGGTACGCTCCGGATCTCGTCCAGG
CAGCGTGATCAGCGGCGTGGGATCCGTGGGAGTTACCAGTCGCCGGGACT
CGACTACGAGCTCAACTTTGCAGCGCGGTGATACCTTTATAATGCCCAAT
TCGGAAGAGGAGGCGCCACCTTCGTCGAACACCTCCACTCTGGAGAAAAA
GTCGAAGAAGTCCAAGGTCTTTAGCAAATTCAGCACCTTCACCAAGCGCA
AGAAGACTCCGTCGCCCGAGGAAGTGGCCAGCTATGAGCATCATCCCAGT
GACACGGCCACGAATACGTACTACAAGTGGCGCAGCGATGGAGCGGACCG
TCTGCAGGACTACGATGCCCAGTCGGATCCGTTTAACTTCCTTTACGAGC
AGCACTCCAATCTGAGGGCCCTGCAAACGGGTGATTCCAGTGGTATCCAC
CGGCAGGCCAGCATTGGTTCCACTTCCAGTGGCAGCTTTGATTCATCCAC
CTACCGTAAGAGCAAAACTCCCACGCATTTGCGAGAGCAGCTGGAGCAGC
TTAAAACCCACTCCAACGACGATCTGCTGGAGGATCAGCAGCGGGAGGAG
GATGAGCGTGAGAAGTACAAGACAGTCACCCTAAATAGCTTTAGGAAGTC
CTTCAGGGACCGCTTGCTGCAGCAGCAGAAGGAAACGCCCCACAATCCCG
CCTGGTTTGTGGAAGTTCCCGGCCAGCCAACAACCACGAAACCTCTGGAA
CGTCGCGAGTCCAAGGAGAACCGTCCCGATTTCCTGGTCTTCGACAATGA
TAACTACCGCCCTCAGTCGCGTTCTCCACTCCGGGATCGTCCCTCTCGTT
CCGCCACCCGTTCTCCGGTGAAACGCAACGAAACTTTCCGGGTCACGCAA
CCCTCAGTGCGTCATATGTCGCCATCGCCGACACCCACACCTGCTCCCTC
CATTCGCATCGAGATCAAGAACTCCATATCACCGCATTCTCCGGGCAGAT
TTGTGCCCGTGGGCGTGGCCAAGCCCATGCCCACCACGGAGTACTATGCG
CAAAGACTGCTCGCGAATAGAACCAGCATGAGCCCCAGTCCAAGTCAAAA
CCAGGGCTCTCGATGGTACCGCCAGCAGAACTCACCCACCCGGTTGAGTG
TGGGTCACCAGCAGCAGCAGCACCAGCACCAGCCCAGCCACCTCAGCCAG
CAGCAAAAGGGAGGACGAACCCTGGTGCACATTGTATCCGACCAGAGTAA
GACCATGACGCCACCAACCCGAGGCAGGGCGCCAACAAGAATCCAGCTGT
ATGACAATAAACCACAGAGTAGACCACAGGCAACGACCTACTTTGGCGGC
CACTACAATGCACCTGTTAAGCCCGGCCCGCGATCAGCATCCACTGGTGG
ACCCACCGTTTATCTGGGGCGTCGCGAACCACCAATGACACGTGCCACCA
CCACCACCAACGCCACCACCAGCAACAGAAGCATCGCCAACAGCACCACC
GCCCACATGGCCGCCCCCGTGCCACGACGCAACCGTTCGCCGATCAAAAT
GCCCTGGCGGTAGGCGTTAACCGAATATCTTATATAGAGATATGTGTATG
TCATATTGCCAATCGAGAATCAAGAATGAGTGGATGACATATATAGCTGT
TCTTTCCAAAGTGACAAAGTCGTCGAAGTTGCGTCATTATCAGAGCTGGG
AGCTCAGCTTTGCCAACGTTGTTTGTGCCCCTCCGATAATGGGCAAATAA
ATGATTTATGTAGCCCCATCAGTCCGAACAATTCGTATCGTGTGTTGTGA
ACTTTTTCTACGTAAAATTATTTTTAAGTAAATACAAAAATAAACGACAA
AAAAGAAAAAAAAAAAAAA

RE28470.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32170-RA 2054 CG32170-RA 4..2051 4..2051 10240 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16866807..16868854 4..2051 10030 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16877322..16879369 4..2051 10240 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16870422..16872469 4..2051 10240 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:55:12 has no hits.

RE28470.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:56:01 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16866804..16868836 1..2033 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:12 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..1623 141..1763 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:24 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..1623 141..1763 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:03 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..1623 141..1763 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:34 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..1623 141..1763 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:47 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..1623 141..1763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:01:15 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..2033 1..2033 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:24 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..2033 1..2033 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:03 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 11..2043 1..2033 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:34 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 1..2033 1..2033 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:47 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
CG32170-RA 11..2043 1..2033 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:01 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16877319..16879351 1..2033 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:01 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16877319..16879351 1..2033 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:01 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16877319..16879351 1..2033 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:03 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16870419..16872451 1..2033 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:12:47 Download gff for RE28470.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16870419..16872451 1..2033 99   Plus

RE28470.hyp Sequence

Translation from 140 to 1762

> RE28470.hyp
MSFFRNIRSSLSSSSRAKSSRSSSRDTTPVRSGSRPGSVISGVGSVGVTS
RRDSTTSSTLQRGDTFIMPNSEEEAPPSSNTSTLEKKSKKSKVFSKFSTF
TKRKKTPSPEEVASYEHHPSDTATNTYYKWRSDGADRLQDYDAQSDPFNF
LYEQHSNLRALQTGDSSGIHRQASIGSTSSGSFDSSTYRKSKTPTHLREQ
LEQLKTHSNDDLLEDQQREEDEREKYKTVTLNSFRKSFRDRLLQQQKETP
HNPAWFVEVPGQPTTTKPLERRESKENRPDFLVFDNDNYRPQSRSPLRDR
PSRSATRSPVKRNETFRVTQPSVRHMSPSPTPTPAPSIRIEIKNSISPHS
PGRFVPVGVAKPMPTTEYYAQRLLANRTSMSPSPSQNQGSRWYRQQNSPT
RLSVGHQQQQHQHQPSHLSQQQKGGRTLVHIVSDQSKTMTPPTRGRAPTR
IQLYDNKPQSRPQATTYFGGHYNAPVKPGPRSASTGGPTVYLGRREPPMT
RATTTTNATTSNRSIANSTTAHMAAPVPRRNRSPIKMPWR*

RE28470.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32170-PA 540 CG32170-PA 1..540 1..540 2825 100 Plus

RE28470.pep Sequence

Translation from 140 to 1762

> RE28470.pep
MSFFRNIRSSLSSSSRAKSSRSSSRDTTPVRSGSRPGSVISGVGSVGVTS
RRDSTTSSTLQRGDTFIMPNSEEEAPPSSNTSTLEKKSKKSKVFSKFSTF
TKRKKTPSPEEVASYEHHPSDTATNTYYKWRSDGADRLQDYDAQSDPFNF
LYEQHSNLRALQTGDSSGIHRQASIGSTSSGSFDSSTYRKSKTPTHLREQ
LEQLKTHSNDDLLEDQQREEDEREKYKTVTLNSFRKSFRDRLLQQQKETP
HNPAWFVEVPGQPTTTKPLERRESKENRPDFLVFDNDNYRPQSRSPLRDR
PSRSATRSPVKRNETFRVTQPSVRHMSPSPTPTPAPSIRIEIKNSISPHS
PGRFVPVGVAKPMPTTEYYAQRLLANRTSMSPSPSQNQGSRWYRQQNSPT
RLSVGHQQQQHQHQPSHLSQQQKGGRTLVHIVSDQSKTMTPPTRGRAPTR
IQLYDNKPQSRPQATTYFGGHYNAPVKPGPRSASTGGPTVYLGRREPPMT
RATTTTNATTSNRSIANSTTAHMAAPVPRRNRSPIKMPWR*

RE28470.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32170-PA 540 CG32170-PA 1..540 1..540 2825 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20856-PA 432 GL20856-PA 1..239 1..248 791 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16730-PB 579 GA16730-PB 1..579 1..540 1676 68.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25669-PA 538 GM25669-PA 1..538 1..540 2689 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17643-PA 297 GD17643-PA 1..297 68..364 1509 96.3 Plus