BDGP Sequence Production Resources |
Search the DGRC for RE28480
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 284 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpS11-RC |
Protein status: | RE28480.pep: gold |
Sequenced Size: | 743 |
Gene | Date | Evidence |
---|---|---|
RpS11-RA | 2008-12-09 | Manual selection by Sue Celniker |
743 bp assembled on 2009-05-29
GenBank Submission: BT088759.1
> RE28480.complete CTTTCCTTTTTCATCAACATGGCTGATCAGAACGAGCGCGCCTTCCAAAA ACAATTCGGTGTCAACCTAAACCGCAAGGTCAAGCCCGGTATCACCAAGA AGAAGCTGCTGCGTCGCTCCCGCGATGTGGGACTCGGTTTCAAGACCCCA CGTGAGGCCATCGATGGTACCTACATCGACAAGAAGTGCCCCTGGACCGG TGATGTGAGGATCCGTGGTCGCATTCTGACCGGCGTGGTCCGCAAGGCCA AGATGCAGCGCACCATTGTCATTCGGCGCGACTACCTGCACTTTGTGCGC AAATACAGCCGTTTCGAGAAGCGTCACCGCAACATGAGCGTCCACTGCTC CCCTGTGTTCAGAGATGTTGAGCATGGCGATATTGTCACCATTGGTGAGT GCCGTCCTCTGTCCAAGACTGTGCGCTTCAACGTCCTGAAAGTCAGCAAG GGTCAGGGAGCCAAGAAGAGCTTCAAGAAGTACTAGAGCGGACAACTACC ATTCGGGCGATAATATTTGTAGCAATTATTCTTTTTGAATAAAACAAAAA AAAGTAACTTTAACCATGGGTTTTCTCCAGTTCTTCTCTCAGTTTCCACA GCATTTCAGCAGTCGTGCAGCCAGCTATTCCATTAAAAGAAACTAAAGAT GACCGCAAGAATATGGACACGAATTGCATTGAATGTACATTATTAATATG ATTTTCTTAAATAAAAGTTGATTGATCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS11-RC | 894 | RpS11-RC | 162..887 | 1..726 | 3630 | 100 | Plus |
RpS11.b | 772 | RpS11.b | 43..766 | 1..726 | 3575 | 99.7 | Plus |
RpS11.a | 897 | RpS11.a | 194..891 | 29..726 | 3490 | 100 | Plus |
RpS11.a | 897 | RpS11.a | 43..72 | 1..30 | 150 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8086529..8086808 | 639..360 | 1400 | 100 | Minus |
chr2R | 21145070 | chr2R | 8087050..8087257 | 362..155 | 1040 | 100 | Minus |
chr2R | 21145070 | chr2R | 8087331..8087460 | 157..28 | 650 | 100 | Minus |
chr2R | 21145070 | chr2R | 8086241..8086329 | 726..638 | 445 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12199313..12199592 | 639..360 | 1400 | 100 | Minus |
2R | 25286936 | 2R | 12199834..12200041 | 362..155 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 12200115..12200244 | 157..28 | 650 | 100 | Minus |
2R | 25286936 | 2R | 12199025..12199113 | 726..638 | 445 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12200512..12200791 | 639..360 | 1400 | 100 | Minus |
2R | 25260384 | 2R | 12201033..12201240 | 362..155 | 1040 | 100 | Minus |
2R | 25260384 | 2R | 12201314..12201443 | 157..28 | 650 | 100 | Minus |
2R | 25260384 | 2R | 12200224..12200312 | 726..638 | 445 | 100 | Minus |
2R | 25260384 | 2R | 12201974..12202003 | 30..1 | 150 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8087050..8087255 | 157..362 | 100 | <- | Minus |
chr2R | 8087332..8087457 | 31..156 | 100 | <- | Minus |
chr2R | 8087991..8088020 | 1..30 | 100 | Minus | |
chr2R | 8086529..8086805 | 363..639 | 100 | <- | Minus |
chr2R | 8086240..8086327 | 640..727 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RA | 1..468 | 19..486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RC | 1..468 | 19..486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RC | 1..468 | 19..486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RC | 1..468 | 19..486 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RA | 25..750 | 1..727 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RC | 25..750 | 1..727 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RC | 12..737 | 1..727 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS11-RC | 12..737 | 1..727 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12199024..12199111 | 640..727 | 98 | <- | Minus |
2R | 12199313..12199589 | 363..639 | 100 | <- | Minus |
2R | 12199834..12200039 | 157..362 | 100 | <- | Minus |
2R | 12200116..12200241 | 31..156 | 100 | <- | Minus |
2R | 12200775..12200804 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12199024..12199111 | 640..727 | 98 | <- | Minus |
2R | 12199313..12199589 | 363..639 | 100 | <- | Minus |
2R | 12199834..12200039 | 157..362 | 100 | <- | Minus |
2R | 12200116..12200241 | 31..156 | 100 | <- | Minus |
2R | 12200775..12200804 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12199024..12199111 | 640..727 | 98 | <- | Minus |
2R | 12199313..12199589 | 363..639 | 100 | <- | Minus |
2R | 12199834..12200039 | 157..362 | 100 | <- | Minus |
2R | 12200116..12200241 | 31..156 | 100 | <- | Minus |
2R | 12200775..12200804 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8086529..8086616 | 640..727 | 98 | <- | Minus |
arm_2R | 8086818..8087094 | 363..639 | 100 | <- | Minus |
arm_2R | 8087339..8087544 | 157..362 | 100 | <- | Minus |
arm_2R | 8087621..8087746 | 31..156 | 100 | <- | Minus |
arm_2R | 8088280..8088309 | 1..30 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12200512..12200788 | 363..639 | 100 | <- | Minus |
2R | 12201033..12201238 | 157..362 | 100 | <- | Minus |
2R | 12201315..12201440 | 31..156 | 100 | <- | Minus |
2R | 12201974..12202003 | 1..30 | 100 | Minus | |
2R | 12200223..12200310 | 640..727 | 98 | <- | Minus |
Translation from 0 to 485
> RE28480.hyp LSFFINMADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTP REAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVR KYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVSK GQGAKKSFKKY*
Translation from 0 to 485
> RE28480.pep LSFFINMADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTP REAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVR KYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVSK GQGAKKSFKKY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12077-PA | 196 | GF12077-PA | 45..196 | 10..161 | 772 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22596-PA | 196 | GG22596-PA | 45..196 | 10..161 | 792 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22980-PA | 196 | GH22980-PA | 45..196 | 10..161 | 771 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS11-PC | 155 | CG8857-PC | 1..155 | 7..161 | 812 | 100 | Plus |
RpS11-PB | 154 | CG8857-PB | 1..154 | 7..161 | 660 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18949-PA | 196 | GI18949-PA | 42..196 | 7..161 | 769 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11264-PA | 196 | GL11264-PA | 45..196 | 10..161 | 761 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21371-PA | 196 | GA21371-PA | 45..196 | 10..161 | 761 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20375-PA | 196 | GM20375-PA | 45..196 | 10..161 | 793 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15239-PA | 196 | GD15239-PA | 45..196 | 10..161 | 792 | 99.3 | Plus |
Dsim\GD25853-PA | 115 | GD25853-PA | 1..115 | 47..161 | 583 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21555-PA | 196 | GJ21555-PA | 42..196 | 7..161 | 765 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22117-PA | 196 | GK22117-PA | 45..196 | 10..161 | 761 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13464-PA | 196 | GE13464-PA | 45..196 | 10..161 | 792 | 99.3 | Plus |