Clone RE28509 Report

Search the DGRC for RE28509

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:285
Well:9
Vector:pFlc-1
Associated Gene/TranscriptCG10176-RB
Protein status:RE28509.pep: gold
Preliminary Size:1201
Sequenced Size:1767

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10176 2002-01-01 Sim4 clustering to Release 2
CG10176 2002-02-22 Blastp of sequenced clone
CG10176 2003-01-01 Sim4 clustering to Release 3
CG10176 2008-04-29 Release 5.5 accounting
CG10176 2008-08-15 Release 5.9 accounting
CG10176 2008-12-18 5.12 accounting

Clone Sequence Records

RE28509.complete Sequence

1767 bp (1767 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084146

> RE28509.complete
AGTATCGAGTTGAATGTGGCTCAAAACGCGTCGCTGAACGATGGCTAAAA
ACGTTTAAAGTTAAAAAGCGTATTAAATCATATAATATATAATATATTGG
TGTAAAAAATACAGAATTAAACCTAATAATTAAGTGTCCGGACATCCCCT
AGAAAAATGTGTGAAAATGTTGAGAAACTAACCGGAATACTATGAAAACT
GCTGTAAAACTTGGCTAAGATAAACTCGTTTGCACCAATACACATGTGAT
TATACGTATAAGGGCAACGCAAAATACTCAGACTCCAGAAGCCAGCAATT
AAAAAAGAAGTTAGTCAGTTAGCGTCTGGGCCGCGTTACTGGTGTATGAA
TCATACTTTGGATACGTTTAAAAATAACAAAACAAAAACCTTAAAACGAG
GAAAAAGTTGTAACAGTGCTAATGTAAACTTCGATCAAACTTAGCGGAAC
GAGCTCGCTACAAAACCAAATACCCATAACAAGTAAATTAAGCACACATT
ATAAAATACCTCAAATGTCGGTCAGGAAGTTGAGTGCCCTATCGCTCTCC
ATTGGTGGAGTTCCGTTGATTCCAAGTGTTTCCTTGGTAGCTGCGGCCAA
TGGAGAGAGTAGGGATTGCCATGGCACGATCTGTCATCCGGTCAATGAAT
TTTGCTATGTTGCAACGGAGAGATGTCATCCGTGCATCGAGGTCTGCAAT
AATCAAACCCACAACTACGATGCGTTTCTGTGCGCCAAGGAATGTTCAGC
TTACAAGACATTTGAGCCGTTAAAAGCCGAGATGCTGGACATCCAGAATA
CCCAGCAGCTGATCCTCTTGCTGCTGACTATCCTTCTCGTCCTGATTGCG
CTTCGTTGCGCGTTTCAGTTCCTTCGATGGCTGATAGGCAATCGGTGCTT
CCAGAAGCTGATGCGCCGTCTCCAATCGAAGGCCTACCCTCATCCGGCAA
CTGCAAATGGAAAGGATCTTAATGCTACCACCATACAGAATCTGAATGCC
ATTAACCATCCCGGCAGCGACCTTGAGCGGGCACAATCACAGATCTACAG
TGTGGCAGGTGCTGCCGAGGGTTCCGTTGTGACTATGACAACGCCGGTGA
GCACTCGCTATCCGGCGGAAAACAGTACCACGCCCACAACGGTTATGACG
GAGATCGGATACGGATACGATAATCAGGCCATGGTCGTAACGCCGGTTTC
CGAGAAACCCTCAGCAGCGACGATTCCCGTCGCTTTCTAAGGCCATACAA
GTACTTGAAAACTCTTACTTCTAAATCAGTCCAGCGAAAGCAAAATGTGC
ACCACATTAAAACTAGTGATATTTTTCATAGTTATTAAGCAAGAAGTCTT
CTATCAATATGGAATATATACGCATATCTGTAGAATATAAACCTTAATTA
ATAGGTTTATATATGTTGGGACATATTTTTGATAACCCAATGTGGCCCTG
AAAACTTATATTCGATCTGTATGAAATTATATGTAAAGGAACTTTTTTCT
CTTTACTTTAATATTTTCCTTAAAGCAACGAAAATACTTACAACATCACA
ACTATGAACGAAGAGACATATTTATAACTGTTAAGAAATATATTTATAAT
GTTCAATTTATTATCATGTTAAGTTTTTTATGTGGAAAAGTTTTGTAAAT
GGTAATATGGGGGGAAACCAATTCATTCGCAATCACCACAAACGTTTCTC
AACACACTTCCATCCGGTTAAAATAATTACGAATGCGAAATAAATCTTCC
TGAAAAAAAAAAAAAAA

RE28509.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10176.a 2298 CG10176.a 236..1991 1..1756 8750 99.8 Plus
CG10176-RB 2108 CG10176-RB 236..1991 1..1756 8750 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18484171..18484919 1..749 3730 99.9 Plus
chr2L 23010047 chr2L 18485731..18486427 1056..1752 3470 99.9 Plus
chr2L 23010047 chr2L 18485340..18485653 747..1060 1570 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:46:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18485454..18486202 1..749 3730 99.9 Plus
2L 23513712 2L 18487014..18487714 1056..1756 3490 99.9 Plus
2L 23513712 2L 18486623..18486936 747..1060 1570 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18485454..18486202 1..749 3730 99.8 Plus
2L 23513712 2L 18487014..18487714 1056..1756 3490 99.8 Plus
2L 23513712 2L 18486623..18486936 747..1060 1570 100 Plus
Blast to na_te.dros performed 2019-03-16 04:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 6253..6312 1571..1627 121 71.7 Plus
opus 7521 opus OPUS 7521bp 6137..6226 47..134 121 61.1 Plus

RE28509.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:56:03 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18484171..18484919 1..749 96 -> Plus
chr2L 18485343..18485651 750..1058 100 -> Plus
chr2L 18485734..18486427 1059..1752 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:07:13 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RA 1..720 515..1240 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:33 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RB 1..726 515..1240 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:05 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RB 1..726 515..1240 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:54 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RA 1..720 515..1240 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:50 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RB 1..726 515..1240 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:03:36 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RA 1..1713 34..1752 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:32 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RB 1..1752 1..1752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:05 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RB 38..1789 1..1752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:54 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RA 1..1713 34..1752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:50 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
CG10176-RB 38..1789 1..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:03 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18485454..18486202 1..749 99 -> Plus
2L 18486626..18486934 750..1058 100 -> Plus
2L 18487017..18487710 1059..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:03 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18485454..18486202 1..749 99 -> Plus
2L 18486626..18486934 750..1058 100 -> Plus
2L 18487017..18487710 1059..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:03 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18485454..18486202 1..749 99 -> Plus
2L 18486626..18486934 750..1058 100 -> Plus
2L 18487017..18487710 1059..1752 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:05 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18486626..18486934 750..1058 100 -> Plus
arm_2L 18485454..18486202 1..749 99 -> Plus
arm_2L 18487017..18487710 1059..1752 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:02 Download gff for RE28509.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18485454..18486202 1..749 99 -> Plus
2L 18486626..18486934 750..1058 100 -> Plus
2L 18487017..18487710 1059..1752 99   Plus

RE28509.hyp Sequence

Translation from 514 to 1239

> RE28509.hyp
MSVRKLSALSLSIGGVPLIPSVSLVAAANGESRDCHGTICHPVNEFCYVA
TERCHPCIEVCNNQTHNYDAFLCAKECSAYKTFEPLKAEMLDIQNTQQLI
LLLLTILLVLIALRCAFQFLRWLIGNRCFQKLMRRLQSKAYPHPATANGK
DLNATTIQNLNAINHPGSDLERAQSQIYSVAGAAEGSVVTMTTPVSTRYP
AENSTTPTTVMTEIGYGYDNQAMVVTPVSEKPSAATIPVAF*

RE28509.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10176-PC 241 CG10176-PC 1..241 1..241 1254 100 Plus
CG10176-PB 241 CG10176-PB 1..241 1..241 1254 100 Plus

RE28509.pep Sequence

Translation from 514 to 1239

> RE28509.pep
MSVRKLSALSLSIGGVPLIPSVSLVAAANGESRDCHGTICHPVNEFCYVA
TERCHPCIEVCNNQTHNYDAFLCAKECSAYKTFEPLKAEMLDIQNTQQLI
LLLLTILLVLIALRCAFQFLRWLIGNRCFQKLMRRLQSKAYPHPATANGK
DLNATTIQNLNAINHPGSDLERAQSQIYSVAGAAEGSVVTMTTPVSTRYP
AENSTTPTTVMTEIGYGYDNQAMVVTPVSEKPSAATIPVAF*

RE28509.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15056-PA 238 GF15056-PA 1..232 1..234 743 70.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21116-PA 241 GG21116-PA 1..241 1..241 1166 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11212-PA 240 GH11212-PA 1..239 1..235 677 62.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
grnd-PC 241 CG10176-PC 1..241 1..241 1254 100 Plus
grnd-PB 241 CG10176-PB 1..241 1..241 1254 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14131-PA 242 GI14131-PA 1..230 1..231 668 58.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19374-PA 238 GL19374-PA 1..234 1..236 757 68.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10133-PA 238 GA10133-PA 1..234 1..236 757 68.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17277-PA 239 GM17277-PA 1..239 1..241 1258 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24140-PA 194 GD24140-PA 1..194 1..241 873 79.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17763-PA 242 GJ17763-PA 1..234 1..232 638 57.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15551-PA 246 GK15551-PA 5..246 4..241 699 62.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13190-PA 239 GE13190-PA 1..239 1..241 1142 94.6 Plus