BDGP Sequence Production Resources |
Search the DGRC for RE28509
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 285 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10176-RB |
Protein status: | RE28509.pep: gold |
Preliminary Size: | 1201 |
Sequenced Size: | 1767 |
Gene | Date | Evidence |
---|---|---|
CG10176 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10176 | 2002-02-22 | Blastp of sequenced clone |
CG10176 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10176 | 2008-04-29 | Release 5.5 accounting |
CG10176 | 2008-08-15 | Release 5.9 accounting |
CG10176 | 2008-12-18 | 5.12 accounting |
1767 bp (1767 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084146
> RE28509.complete AGTATCGAGTTGAATGTGGCTCAAAACGCGTCGCTGAACGATGGCTAAAA ACGTTTAAAGTTAAAAAGCGTATTAAATCATATAATATATAATATATTGG TGTAAAAAATACAGAATTAAACCTAATAATTAAGTGTCCGGACATCCCCT AGAAAAATGTGTGAAAATGTTGAGAAACTAACCGGAATACTATGAAAACT GCTGTAAAACTTGGCTAAGATAAACTCGTTTGCACCAATACACATGTGAT TATACGTATAAGGGCAACGCAAAATACTCAGACTCCAGAAGCCAGCAATT AAAAAAGAAGTTAGTCAGTTAGCGTCTGGGCCGCGTTACTGGTGTATGAA TCATACTTTGGATACGTTTAAAAATAACAAAACAAAAACCTTAAAACGAG GAAAAAGTTGTAACAGTGCTAATGTAAACTTCGATCAAACTTAGCGGAAC GAGCTCGCTACAAAACCAAATACCCATAACAAGTAAATTAAGCACACATT ATAAAATACCTCAAATGTCGGTCAGGAAGTTGAGTGCCCTATCGCTCTCC ATTGGTGGAGTTCCGTTGATTCCAAGTGTTTCCTTGGTAGCTGCGGCCAA TGGAGAGAGTAGGGATTGCCATGGCACGATCTGTCATCCGGTCAATGAAT TTTGCTATGTTGCAACGGAGAGATGTCATCCGTGCATCGAGGTCTGCAAT AATCAAACCCACAACTACGATGCGTTTCTGTGCGCCAAGGAATGTTCAGC TTACAAGACATTTGAGCCGTTAAAAGCCGAGATGCTGGACATCCAGAATA CCCAGCAGCTGATCCTCTTGCTGCTGACTATCCTTCTCGTCCTGATTGCG CTTCGTTGCGCGTTTCAGTTCCTTCGATGGCTGATAGGCAATCGGTGCTT CCAGAAGCTGATGCGCCGTCTCCAATCGAAGGCCTACCCTCATCCGGCAA CTGCAAATGGAAAGGATCTTAATGCTACCACCATACAGAATCTGAATGCC ATTAACCATCCCGGCAGCGACCTTGAGCGGGCACAATCACAGATCTACAG TGTGGCAGGTGCTGCCGAGGGTTCCGTTGTGACTATGACAACGCCGGTGA GCACTCGCTATCCGGCGGAAAACAGTACCACGCCCACAACGGTTATGACG GAGATCGGATACGGATACGATAATCAGGCCATGGTCGTAACGCCGGTTTC CGAGAAACCCTCAGCAGCGACGATTCCCGTCGCTTTCTAAGGCCATACAA GTACTTGAAAACTCTTACTTCTAAATCAGTCCAGCGAAAGCAAAATGTGC ACCACATTAAAACTAGTGATATTTTTCATAGTTATTAAGCAAGAAGTCTT CTATCAATATGGAATATATACGCATATCTGTAGAATATAAACCTTAATTA ATAGGTTTATATATGTTGGGACATATTTTTGATAACCCAATGTGGCCCTG AAAACTTATATTCGATCTGTATGAAATTATATGTAAAGGAACTTTTTTCT CTTTACTTTAATATTTTCCTTAAAGCAACGAAAATACTTACAACATCACA ACTATGAACGAAGAGACATATTTATAACTGTTAAGAAATATATTTATAAT GTTCAATTTATTATCATGTTAAGTTTTTTATGTGGAAAAGTTTTGTAAAT GGTAATATGGGGGGAAACCAATTCATTCGCAATCACCACAAACGTTTCTC AACACACTTCCATCCGGTTAAAATAATTACGAATGCGAAATAAATCTTCC TGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 18484171..18484919 | 1..749 | 3730 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 18485731..18486427 | 1056..1752 | 3470 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 18485340..18485653 | 747..1060 | 1570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 18485454..18486202 | 1..749 | 3730 | 99.9 | Plus |
2L | 23513712 | 2L | 18487014..18487714 | 1056..1756 | 3490 | 99.9 | Plus |
2L | 23513712 | 2L | 18486623..18486936 | 747..1060 | 1570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 18485454..18486202 | 1..749 | 3730 | 99.8 | Plus |
2L | 23513712 | 2L | 18487014..18487714 | 1056..1756 | 3490 | 99.8 | Plus |
2L | 23513712 | 2L | 18486623..18486936 | 747..1060 | 1570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 18484171..18484919 | 1..749 | 96 | -> | Plus |
chr2L | 18485343..18485651 | 750..1058 | 100 | -> | Plus |
chr2L | 18485734..18486427 | 1059..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RA | 1..720 | 515..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RB | 1..726 | 515..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RB | 1..726 | 515..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RA | 1..720 | 515..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RB | 1..726 | 515..1240 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RA | 1..1713 | 34..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RB | 1..1752 | 1..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RB | 38..1789 | 1..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RA | 1..1713 | 34..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10176-RB | 38..1789 | 1..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18485454..18486202 | 1..749 | 99 | -> | Plus |
2L | 18486626..18486934 | 750..1058 | 100 | -> | Plus |
2L | 18487017..18487710 | 1059..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18485454..18486202 | 1..749 | 99 | -> | Plus |
2L | 18486626..18486934 | 750..1058 | 100 | -> | Plus |
2L | 18487017..18487710 | 1059..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18485454..18486202 | 1..749 | 99 | -> | Plus |
2L | 18486626..18486934 | 750..1058 | 100 | -> | Plus |
2L | 18487017..18487710 | 1059..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 18486626..18486934 | 750..1058 | 100 | -> | Plus |
arm_2L | 18485454..18486202 | 1..749 | 99 | -> | Plus |
arm_2L | 18487017..18487710 | 1059..1752 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 18485454..18486202 | 1..749 | 99 | -> | Plus |
2L | 18486626..18486934 | 750..1058 | 100 | -> | Plus |
2L | 18487017..18487710 | 1059..1752 | 99 | Plus |
Translation from 514 to 1239
> RE28509.hyp MSVRKLSALSLSIGGVPLIPSVSLVAAANGESRDCHGTICHPVNEFCYVA TERCHPCIEVCNNQTHNYDAFLCAKECSAYKTFEPLKAEMLDIQNTQQLI LLLLTILLVLIALRCAFQFLRWLIGNRCFQKLMRRLQSKAYPHPATANGK DLNATTIQNLNAINHPGSDLERAQSQIYSVAGAAEGSVVTMTTPVSTRYP AENSTTPTTVMTEIGYGYDNQAMVVTPVSEKPSAATIPVAF*
Translation from 514 to 1239
> RE28509.pep MSVRKLSALSLSIGGVPLIPSVSLVAAANGESRDCHGTICHPVNEFCYVA TERCHPCIEVCNNQTHNYDAFLCAKECSAYKTFEPLKAEMLDIQNTQQLI LLLLTILLVLIALRCAFQFLRWLIGNRCFQKLMRRLQSKAYPHPATANGK DLNATTIQNLNAINHPGSDLERAQSQIYSVAGAAEGSVVTMTTPVSTRYP AENSTTPTTVMTEIGYGYDNQAMVVTPVSEKPSAATIPVAF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15056-PA | 238 | GF15056-PA | 1..232 | 1..234 | 743 | 70.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21116-PA | 241 | GG21116-PA | 1..241 | 1..241 | 1166 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11212-PA | 240 | GH11212-PA | 1..239 | 1..235 | 677 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
grnd-PC | 241 | CG10176-PC | 1..241 | 1..241 | 1254 | 100 | Plus |
grnd-PB | 241 | CG10176-PB | 1..241 | 1..241 | 1254 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14131-PA | 242 | GI14131-PA | 1..230 | 1..231 | 668 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19374-PA | 238 | GL19374-PA | 1..234 | 1..236 | 757 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10133-PA | 238 | GA10133-PA | 1..234 | 1..236 | 757 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17277-PA | 239 | GM17277-PA | 1..239 | 1..241 | 1258 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24140-PA | 194 | GD24140-PA | 1..194 | 1..241 | 873 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17763-PA | 242 | GJ17763-PA | 1..234 | 1..232 | 638 | 57.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15551-PA | 246 | GK15551-PA | 5..246 | 4..241 | 699 | 62.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13190-PA | 239 | GE13190-PA | 1..239 | 1..241 | 1142 | 94.6 | Plus |