BDGP Sequence Production Resources |
Search the DGRC for RE28524
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 285 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mRpS17-RA |
Protein status: | RE28524.pep: gold |
Preliminary Size: | 684 |
Sequenced Size: | 723 |
Gene | Date | Evidence |
---|---|---|
CG4326 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4326 | 2002-02-22 | Blastp of sequenced clone |
CG4326 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpS17 | 2008-04-29 | Release 5.5 accounting |
mRpS17 | 2008-08-15 | Release 5.9 accounting |
mRpS17 | 2008-12-18 | 5.12 accounting |
723 bp (723 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084147
> RE28524.complete AGTGATCTACCAGCTGTGTTTCCCAACCGGTTGTTTATTTTTCTAAACTC TTAAATTAAATTAAAGTAATGTCGAGGCGAGGACTCCTACTAATGGGCCA GTGCATGCCCTGCATCAAGCAGAACGCCTCCAAGATCCGCATTCGCCGAA TGGAGCTGGACAAGAACCTGAATATGTACTTTAAGAAGGACGAGTTCTAC TTCGCCCACGATCCGCAGAAGGTGTGCAAGACCGGGGACGTGGTCCTGAT ACGGGAACTGCCAGAGCGCCTCACCCGCCTCATCACGCACAACGTGGAAA AAGTGGTCTATCCGCTGGGTGACATAACGGACCCGCTCACTGGCAAGAAG GTGGTCGTGGGCAATTACCGCGAGGACATCGAGATGGCCAACCAGCTGTT CGGCAAGTCAGAGAAGGCCTTCGACTACGAGAAGGCACCGCCCCGCGGTC GCCTGGAGGGAACCAAGGACTTCACCCACGGGGAAACATACATCAAGTAC CACGAGGATGGCAAGGATCAGCCGTTCGCCGTTTAGAGCTCTGCCGGTCG TTTATCTGTTAAGTTTCCCCTTTGTTTAATAGTAAAGTGCATTAATATGA CGTACATATGTTTCTCGGTTTTCTTATAAAATGGTTAGGCCGACGAAAGA AGATATTTTTATAGGTTTTTGATTGCTTGAATTGAATTAAAAAGGCAGGT TTAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS17-RA | 724 | mRpS17-RA | 17..724 | 1..708 | 3540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20059681..20060211 | 177..707 | 99 | <- | Minus |
chr2R | 20060276..20060451 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 1..468 | 69..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 1..468 | 69..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 1..468 | 69..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 1..468 | 69..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 1..468 | 69..536 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 1..707 | 1..707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 1..707 | 1..707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 7..713 | 1..707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 3..709 | 1..707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpS17-RA | 7..713 | 1..707 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24173665..24174195 | 177..707 | 100 | <- | Minus |
2R | 24174260..24174435 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24173665..24174195 | 177..707 | 100 | <- | Minus |
2R | 24174260..24174435 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24173665..24174195 | 177..707 | 100 | <- | Minus |
2R | 24174260..24174435 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20061188..20061718 | 177..707 | 100 | <- | Minus |
arm_2R | 20061783..20061958 | 1..176 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24174882..24175412 | 177..707 | 100 | <- | Minus |
2R | 24175477..24175652 | 1..176 | 100 | Minus |
Translation from 68 to 535
> RE28524.hyp MSRRGLLLMGQCMPCIKQNASKIRIRRMELDKNLNMYFKKDEFYFAHDPQ KVCKTGDVVLIRELPERLTRLITHNVEKVVYPLGDITDPLTGKKVVVGNY REDIEMANQLFGKSEKAFDYEKAPPRGRLEGTKDFTHGETYIKYHEDGKD QPFAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS17-PA | 155 | CG4326-PA | 1..155 | 1..155 | 824 | 100 | Plus |
Translation from 68 to 535
> RE28524.pep MSRRGLLLMGQCMPCIKQNASKIRIRRMELDKNLNMYFKKDEFYFAHDPQ KVCKTGDVVLIRELPERLTRLITHNVEKVVYPLGDITDPLTGKKVVVGNY REDIEMANQLFGKSEKAFDYEKAPPRGRLEGTKDFTHGETYIKYHEDGKD QPFAV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13471-PA | 155 | GF13471-PA | 1..155 | 1..155 | 796 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19946-PA | 155 | GG19946-PA | 1..155 | 1..155 | 808 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21909-PA | 155 | GH21909-PA | 1..155 | 1..155 | 779 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpS17-PA | 155 | CG4326-PA | 1..155 | 1..155 | 824 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19260-PA | 155 | GI19260-PA | 1..155 | 1..155 | 776 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17109-PA | 155 | GL17109-PA | 1..155 | 1..155 | 792 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18111-PA | 155 | GA18111-PA | 1..155 | 1..155 | 792 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18264-PA | 155 | GM18264-PA | 1..155 | 1..155 | 817 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24969-PA | 155 | GD24969-PA | 1..155 | 1..155 | 817 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22135-PA | 155 | GJ22135-PA | 1..155 | 1..155 | 777 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23193-PA | 155 | GK23193-PA | 1..155 | 1..155 | 798 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11475-PA | 155 | GE11475-PA | 1..155 | 1..155 | 822 | 99.4 | Plus |