BDGP Sequence Production Resources |
Search the DGRC for RE28551
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 285 |
Well: | 51 |
Vector: | pFlc-1 |
Associated Gene/Transcript | grim-RA |
Protein status: | RE28551.pep: gold |
Preliminary Size: | 417 |
Sequenced Size: | 1713 |
Gene | Date | Evidence |
---|---|---|
CG4345 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4345 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4345 | 2003-02-11 | Blastp of sequenced clone |
grim | 2008-04-29 | Release 5.5 accounting |
grim | 2008-08-15 | Release 5.9 accounting |
grim | 2008-12-18 | 5.12 accounting |
1713 bp (1713 high quality bases) assembled on 2003-02-11
GenBank Submission: BT003512
> RE28551.complete GGCAGTCCACTCTGAAACCTCGACGAGAGAACATTGAATAACAAGCGGAA GCGAAAAGCGCAGTTGAAAGTTCGTCAAAAAGCGACAAGTTTCCTCGTTC GTTTTCCCGCCAAATGAGTCAGAAAAATTTTCCAAGTGCTCGATACGAAA CATAAAGACTTACAAGACTTAAAGTGCAAGCAGTGAATGGAATATATTAT TCCTCAGCGATATTGAAATCAAACATTAAAAATATATGCTACACTAAAGT TATATATTTTTTTAAAGATTCATACGTTTTGTAAAATCACATTTTGTATT AAATTAAATACCGCCATGGCCATCGCCTATTTCATACCCGACCAGGCCCA ATTGTTGGCCAGAAGCTATCAGCAAAACGGCCAGCAGACAGCAGCGAGTC CAAGGACAACTGCAACAGCTGCTGCACCATCGCAGCAGCAGCAACAATCG CAACAACAGCAGCAGCAGCAGCGACATCATCATCAGCAACAGCGCCCACA ATTCCGTGCCAATATTTCCGTGCCGCTGGGAAGTCAACAGGGATCGATGA CCATGTCGGAGTTTGGATGCTGGGATCTTTTGGCCCAGATCTTCTGCTAC GCTCTGCGAATCTACAGCTACAGTTCGAGCCAGCGTCAACCGACGGTCAT TCAGATATCCTTCGAGATCAGCAGCGGCGGTCAGAACAACGATGAGGACG ACGTGACTGATGCCACCTCCAAGGAGAACTAAATTTGGTTTCCATATTTC ATCCTGGTGGAGAGAAAATCTTTGGGATTTTCTGGGAAAGGCAGGCTCAA TCAAAGCGCATTGTGATTTCTTTTTTGGGTATGGACACATGAGGAGGAAC GAGTTTTGTAAAACATGGGATATTTCCACAACAAAATAAGAAAACTATTT TTAAACTATTTTTGAGAGAGAGAAAATTCAAAATTTGTCATCGACTTGCT TAAAGTGATTTTGGTTGTTTGTTACTTTTTTGGATGTCAAATTTTCCGAT ATAAGTTTTGAAAAAAATGTTTAATTTTGCAAGCAAAGGTTTCCCGGTTG GTTCAAATACATAAACATACTTAACAACATTTAGAGAGCATAAAGAGAAA TGTGTAAAATTGTCATAAACCTTATTAGTGTCTATACGTATGAGCAAAAC CACAAGTATCGTACTCAACTAACAAATAATTGTCAAATTTTCTACTTCAA CTACTTCAACTACATTTCAACTACTTACAAATATAAATCGTAAACTAATA TTACAGAACTACAATACAGAACCAACAACAAAACAAAGATGCAACCGCAG CAACAAGAATAACAAAAGACAACAACTCAATTGTACAAAATAGATTTTAA GCAAACAGCAAATTTTATATGTTTACAACAAAGGGAGAAAATACAAAACG TCTACAAAAAATAGAATACAAGAACCGCCGAACAGAATACATTTTAACAA AAATTAAACAAAACAACAACAAACATTTAAGCAATTTTGATACGAATAAT CAAGAATAACAAAATTTGAAATGTATCTTATCATTATTATTGATTTTAGC AAAATTCAAAACATATTATTTTAATTTTGGCATTGCAAATTAAACAAGAA ATATTGAAATTAATCACATGTAAAGATAGCATTTGTAAGAAATTAAAATT TTTATAAGACAAACAAGCAAAAAATAAATACAATTTTATAAAAAATTAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
grim-RA | 1696 | grim-RA | 3..1696 | 3..1697 | 8420 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 18292343..18293996 | 1697..3 | 7635 | 97.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 18302713..18304412 | 1703..3 | 8440 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18295813..18297512 | 1703..3 | 8450 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rover | 7318 | rover ROVER 7318bp | 489..1085 | 1068..1665 | 252 | 55.4 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 771..1067 | 1396..1694 | 247 | 58.8 | Plus |
rover | 7318 | rover ROVER 7318bp | 639..1083 | 1053..1513 | 214 | 56.4 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1033..1330 | 1611..1308 | 163 | 54.7 | Minus |
rover | 7318 | rover ROVER 7318bp | 790..1142 | 1053..1411 | 141 | 56 | Plus |
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 343..609 | 1374..1634 | 139 | 53.4 | Plus |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 3038..3207 | 1166..1327 | 139 | 56.7 | Plus |
gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 703..888 | 1367..1555 | 137 | 55.7 | Plus |
412 | 7567 | 412 412 7567bp | 3914..4053 | 162..302 | 134 | 57.7 | Plus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 94..199 | 1697..1591 | 127 | 58.9 | Minus |
hopper | 1435 | hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). | 164..220 | 248..192 | 123 | 68.4 | Minus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 4543..4581 | 1572..1534 | 114 | 76.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18292373..18292813 | 1227..1667 | 99 | == | Minus |
chr3L | 18292830..18293531 | 489..1191 | 99 | == | Minus |
chr3L | 18293618..18293998 | 1..381 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..417 | 316..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..417 | 316..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..417 | 316..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..417 | 316..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..417 | 316..732 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..1696 | 2..1697 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..1696 | 2..1697 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 4..1699 | 1..1697 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 1..1696 | 2..1697 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
grim-RA | 4..1699 | 1..1697 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18302719..18304414 | 1..1697 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18302719..18304414 | 1..1697 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18302719..18304414 | 1..1697 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18295819..18297514 | 1..1697 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18295819..18297514 | 1..1697 | 99 | Minus |
Translation from 315 to 731
> RE28551.pep MAIAYFIPDQAQLLARSYQQNGQQTAASPRTTATAAAPSQQQQQSQQQQQ QQRHHHQQQRPQFRANISVPLGSQQGSMTMSEFGCWDLLAQIFCYALRIY SYSSSQRQPTVIQISFEISSGGQNNDEDDVTDATSKEN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10822-PA | 128 | GF10822-PA | 1..128 | 1..138 | 412 | 71.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15746-PA | 140 | GG15746-PA | 1..140 | 1..138 | 512 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22247-PA | 156 | GH22247-PA | 1..125 | 1..126 | 352 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
grim-PA | 138 | CG4345-PA | 1..138 | 1..138 | 710 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11722-PA | 151 | GI11722-PA | 1..128 | 1..122 | 324 | 62.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22714-PA | 158 | GL22714-PA | 1..158 | 1..138 | 354 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18123-PA | 150 | GA18123-PA | 1..150 | 1..138 | 338 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14945-PA | 136 | GM14945-PA | 1..136 | 1..138 | 664 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12347-PA | 136 | GD12347-PA | 1..136 | 1..138 | 663 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11395-PA | 150 | GJ11395-PA | 1..147 | 1..136 | 383 | 61.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11571-PA | 150 | GK11571-PA | 1..141 | 1..132 | 346 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22078-PA | 142 | GE22078-PA | 1..142 | 1..138 | 508 | 88 | Plus |
Translation from 315 to 731
> RE28551.hyp MAIAYFIPDQAQLLARSYQQNGQQTAASPRTTATAAAPSQQQQQSQQQQQ QQRHHHQQQRPQFRANISVPLGSQQGSMTMSEFGCWDLLAQIFCYALRIY SYSSSQRQPTVIQISFEISSGGQNNDEDDVTDATSKEN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
grim-PA | 138 | CG4345-PA | 1..138 | 1..138 | 710 | 100 | Plus |